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PubMed:11029462 JSONTXT

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CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 1676-1692 Cell denotes epithelial cells http://purl.obolibrary.org/obo/CL:0000066
T2 1759-1770 Cell denotes hepatocytes http://purl.obolibrary.org/obo/CL:0000182
T3 1851-1856 Cell denotes basal http://purl.obolibrary.org/obo/CL:0002324
T4 1924-1932 Cell denotes neuronal http://purl.obolibrary.org/obo/CL:0000540

GlyCosmos15-Species-PubTator

Id Subject Object Predicate Lexical cue db_id
2 44-49 Species denotes human 9606
29 227-232 Species denotes human 9606
33 580-585 Species denotes human 9606
34 774-779 Species denotes human 9606

ggdb-test

Id Subject Object Predicate Lexical cue
T1 202-207 https://acgg.asia/db/ggdb/info/gg042 denotes GP3ST
T2 315-318 https://acgg.asia/db/ggdb/info/gg178 denotes CST
T3 315-318 https://acgg.asia/db/ggdb/info/gg041 denotes CST
T4 780-783 https://acgg.asia/db/ggdb/info/gg178 denotes CST
T5 780-783 https://acgg.asia/db/ggdb/info/gg041 denotes CST
T6 859-862 https://acgg.asia/db/ggdb/info/gg178 denotes CST
T7 859-862 https://acgg.asia/db/ggdb/info/gg041 denotes CST
T8 1478-1483 https://acgg.asia/db/ggdb/info/gg042 denotes GP3ST
T9 1649-1654 https://acgg.asia/db/ggdb/info/gg042 denotes GP3ST

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 987-1006 Glycan_Motif denotes N-acetyllactosamine https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00055MO
T2 1017-1033 Glycan_Motif denotes lacto-N-tetraose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G48059CD|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G45827GY
T4 1041-1060 Glycan_Motif denotes lacto-N-neotetraose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G48059CD|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G45827GY
T6 1106-1121 Glycan_Motif denotes O-glycan core 1 https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00031MO

GGDB-2020

Id Subject Object Predicate Lexical cue
T1 202-207 https://acgg.asia/db/ggdb/info/gg042 denotes GP3ST
T2 315-318 https://acgg.asia/db/ggdb/info/gg041 denotes CST
T3 315-318 https://acgg.asia/db/ggdb/info/gg178 denotes CST
T4 780-783 https://acgg.asia/db/ggdb/info/gg041 denotes CST
T5 780-783 https://acgg.asia/db/ggdb/info/gg178 denotes CST
T6 859-862 https://acgg.asia/db/ggdb/info/gg041 denotes CST
T7 859-862 https://acgg.asia/db/ggdb/info/gg178 denotes CST
T8 1478-1483 https://acgg.asia/db/ggdb/info/gg042 denotes GP3ST
T9 1649-1654 https://acgg.asia/db/ggdb/info/gg042 denotes GP3ST

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 987-1006 https://glytoucan.org/Structures/Glycans/G00055MO denotes N-acetyllactosamine
T2 1017-1033 https://glytoucan.org/Structures/Glycans/G45827GY denotes lacto-N-tetraose
T3 1017-1033 https://glytoucan.org/Structures/Glycans/G48059CD denotes lacto-N-tetraose
T4 1041-1060 https://glytoucan.org/Structures/Glycans/G45827GY denotes lacto-N-neotetraose
T5 1041-1060 https://glytoucan.org/Structures/Glycans/G48059CD denotes lacto-N-neotetraose
T6 1106-1121 https://glytoucan.org/Structures/Glycans/G00031MO denotes O-glycan core 1

sentences

Id Subject Object Predicate Lexical cue
T1 0-159 Sentence denotes Molecular cloning and characterization of a human beta-Gal-3'-sulfotransferase that acts on both type 1 and type 2 (Gal beta 1-3/1-4GlcNAc-R) oligosaccharides.
T2 160-407 Sentence denotes A novel sulfotransferase gene (designated GP3ST) was identified on human chromosome 2q37.3 based on its similarity to the cerebroside 3'-sulfotransferase (CST) cDNA (Honke, K., Tsuda, M., Hirahara, Y., Ishii, A., Makita, A., and Wada, Y. (1997) J.
T3 408-413 Sentence denotes Biol.
T4 414-419 Sentence denotes Chem.
T5 420-436 Sentence denotes 272, 4864-4868).
T6 437-597 Sentence denotes A full-length cDNA was obtained by reverse transcription-polymerase chain reaction and 5'- and 3'-rapid amplification of cDNA ends analyses of human colon mRNA.
T7 598-719 Sentence denotes The isolated cDNA clone predicts that the protein is a type II transmembrane protein composed of 398 amino acid residues.
T8 720-793 Sentence denotes The amino acid sequence indicates 33% identity to the human CST sequence.
T9 794-1139 Sentence denotes A recombinant protein that is expressed in COS-1 cells showed no CST activity, but did show sulfotransferase activities toward oligosaccharides containing nonreducing beta-galactosides such as N-acetyllactosamine, lactose, lacto-N-tetraose (Lc4), lacto-N-neotetraose (nLc4), and Gal beta 1-3GalNAc alpha-benzyl (O-glycan core 1 oligosaccharide).
T10 1140-1296 Sentence denotes To characterize the cloned sulfotransferase, a sulfotransferase assay method was developed that uses pyridylaminated (PA) Lc4 and nLc4 as enzyme substrates.
T11 1297-1445 Sentence denotes The enzyme product using PA-Lc4 as an acceptor was identified as HSO(3)-3Gal beta 1-3GlcNAc beta 1-3Gal beta 1- 4Glc-PA by two-dimensional (1)H NMR.
T12 1446-1604 Sentence denotes Kinetics studies suggested that GP3ST is able to act on both type 1 (Gal beta 1-3GlcNAc-R) and type 2 (Gal beta 1-4GlcNAc-R) chains with a similar efficiency.
T13 1605-1962 Sentence denotes In situ hybridization demonstrated that the GP3ST gene is expressed in epithelial cells lining the lower to middle layer of the crypts in colonic mucosa, hepatocytes surrounding the central vein of the liver, extravillous cytotrophoblasts in the basal plate and septum of the placenta, renal tubules of the kidney, and neuronal cells of the cerebral cortex.
T14 1963-2064 Sentence denotes The results of this study indicate the existence of a novel beta-Gal-3'-sulfotransferase gene family.

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 586-591 http://purl.obolibrary.org/obo/MAT_0000526 denotes colon
T2 1743-1750 http://purl.obolibrary.org/obo/MAT_0000526 denotes colonic
T3 1795-1799 http://purl.obolibrary.org/obo/MAT_0000037 denotes vein
T4 1807-1812 http://purl.obolibrary.org/obo/MAT_0000097 denotes liver
T5 1881-1889 http://purl.obolibrary.org/obo/MAT_0000279 denotes placenta
T6 1912-1918 http://purl.obolibrary.org/obo/MAT_0000119 denotes kidney
T7 1946-1961 http://purl.obolibrary.org/obo/MAT_0000108 denotes cerebral cortex

Glycosmos6-GlycoEpitope

Id Subject Object Predicate Lexical cue
T1 1017-1033 http://www.glycoepitope.jp/epitopes/EP0322 denotes lacto-N-tetraose
T2 1041-1060 http://www.glycoepitope.jp/epitopes/EP0350 denotes lacto-N-neotetraose

glycogenes

Id Subject Object Predicate Lexical cue
PD-GlycoGenes20190927-B_T1 191-201 url denotes designated
PD-GlycoGenes20190927-B_T2 202-207 https://acgg.asia/db/ggdb/info/gg042 denotes GP3ST
PD-GlycoGenes20190927-B_T3 315-318 https://acgg.asia/db/ggdb/info/gg178 denotes CST
PD-GlycoGenes20190927-B_T4 315-318 https://acgg.asia/db/ggdb/info/gg041 denotes CST
PD-GlycoGenes20190927-B_T5 658-660 https://acgg.asia/db/ggdb/info/gg111 denotes II
PD-GlycoGenes20190927-B_T6 780-783 https://acgg.asia/db/ggdb/info/gg178 denotes CST
PD-GlycoGenes20190927-B_T7 780-783 https://acgg.asia/db/ggdb/info/gg041 denotes CST
PD-GlycoGenes20190927-B_T8 859-862 https://acgg.asia/db/ggdb/info/gg178 denotes CST
PD-GlycoGenes20190927-B_T9 859-862 https://acgg.asia/db/ggdb/info/gg041 denotes CST
PD-GlycoGenes20190927-B_T10 1478-1483 https://acgg.asia/db/ggdb/info/gg042 denotes GP3ST
PD-GlycoGenes20190927-B_T11 1649-1654 https://acgg.asia/db/ggdb/info/gg042 denotes GP3ST

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 1008-1015 Glycan denotes lactose https://api.glycosmos.org/wurcs2image/latest/png/binary/G15541SE
T2 1017-1033 Glycan denotes lacto-N-tetraose https://api.glycosmos.org/wurcs2image/latest/png/binary/G45827GY
T3 1035-1038 Glycan denotes Lc4 https://api.glycosmos.org/wurcs2image/latest/png/binary/G00049MO
T4 1041-1060 Glycan denotes lacto-N-neotetraose https://api.glycosmos.org/wurcs2image/latest/png/binary/G48059CD
T5 1062-1066 Glycan denotes nLc4 https://api.glycosmos.org/wurcs2image/latest/png/binary/G58896AZ
T6 1115-1121 Glycan denotes core 1 https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO
T7 1262-1265 Glycan denotes Lc4 https://api.glycosmos.org/wurcs2image/latest/png/binary/G00049MO
T8 1270-1274 Glycan denotes nLc4 https://api.glycosmos.org/wurcs2image/latest/png/binary/G58896AZ
T9 1325-1328 Glycan denotes Lc4 https://api.glycosmos.org/wurcs2image/latest/png/binary/G00049MO

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 1008-1015 Glycan denotes lactose https://api.glycosmos.org/wurcs2image/latest/png/binary/G15541SE
T2 1017-1033 Glycan denotes lacto-N-tetraose https://api.glycosmos.org/wurcs2image/latest/png/binary/G45827GY
T3 1035-1038 Glycan denotes Lc4 https://api.glycosmos.org/wurcs2image/latest/png/binary/G00049MO
T4 1041-1060 Glycan denotes lacto-N-neotetraose https://api.glycosmos.org/wurcs2image/latest/png/binary/G48059CD
T5 1062-1066 Glycan denotes nLc4 https://api.glycosmos.org/wurcs2image/latest/png/binary/G58896AZ
T6 1115-1121 Glycan denotes core 1 https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO
T7 1262-1265 Glycan denotes Lc4 https://api.glycosmos.org/wurcs2image/latest/png/binary/G00049MO
T8 1270-1274 Glycan denotes nLc4 https://api.glycosmos.org/wurcs2image/latest/png/binary/G58896AZ
T9 1325-1328 Glycan denotes Lc4 https://api.glycosmos.org/wurcs2image/latest/png/binary/G00049MO

GlyCosmos-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 1017-1033 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes lacto-N-tetraose http://www.glycoepitope.jp/epitopes/EP0322
T2 1041-1060 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes lacto-N-neotetraose http://www.glycoepitope.jp/epitopes/EP0350

GlyCosmos15-CL

Id Subject Object Predicate Lexical cue cl_id
T1 1676-1692 Cell denotes epithelial cells http://purl.obolibrary.org/obo/CL:0000066
T2 1759-1770 Cell denotes hepatocytes http://purl.obolibrary.org/obo/CL:0000182
T3 1851-1856 Cell denotes basal http://purl.obolibrary.org/obo/CL:0002324
T4 1924-1932 Cell denotes neuronal http://purl.obolibrary.org/obo/CL:0000540

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 233-243 Body_part denotes chromosome http://purl.obolibrary.org/obo/GO_0005694
T2 586-591 Body_part denotes colon http://purl.obolibrary.org/obo/UBERON_0001155
T3 661-674 Body_part denotes transmembrane http://purl.obolibrary.org/obo/GO_0016020
T4 1676-1692 Body_part denotes epithelial cells http://purl.obolibrary.org/obo/CL_0000066
T5 1720-1725 Body_part denotes layer http://purl.obolibrary.org/obo/UBERON_0000119|http://purl.obolibrary.org/obo/UBERON_0022303
T7 1743-1757 Body_part denotes colonic mucosa http://purl.obolibrary.org/obo/UBERON_0000317
T8 1759-1770 Body_part denotes hepatocytes http://purl.obolibrary.org/obo/CL_0000182
T9 1787-1799 Body_part denotes central vein http://purl.obolibrary.org/obo/UBERON_0006841
T10 1807-1812 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T11 1827-1843 Body_part denotes cytotrophoblasts http://purl.obolibrary.org/obo/UBERON_0000319
T12 1851-1862 Body_part denotes basal plate http://purl.obolibrary.org/obo/UBERON_0004064|http://purl.obolibrary.org/obo/UBERON_4300019|http://purl.obolibrary.org/obo/UBERON_4300020
T15 1867-1873 Body_part denotes septum http://purl.obolibrary.org/obo/UBERON_0000446|http://purl.obolibrary.org/obo/UBERON_0003037
T17 1881-1889 Body_part denotes placenta http://purl.obolibrary.org/obo/UBERON_0001987
T18 1891-1911 Body_part denotes renal tubules of the http://purl.obolibrary.org/obo/UBERON_0001231|http://purl.obolibrary.org/obo/UBERON_0009773
T20 1912-1918 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T21 1946-1961 Body_part denotes cerebral cortex http://purl.obolibrary.org/obo/UBERON_0000956

GlyCosmos15-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 1017-1033 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes lacto-N-tetraose http://www.glycoepitope.jp/epitopes/EP0322
T2 1041-1060 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes lacto-N-neotetraose http://www.glycoepitope.jp/epitopes/EP0350

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-159 Sentence denotes Molecular cloning and characterization of a human beta-Gal-3'-sulfotransferase that acts on both type 1 and type 2 (Gal beta 1-3/1-4GlcNAc-R) oligosaccharides.
T2 160-436 Sentence denotes A novel sulfotransferase gene (designated GP3ST) was identified on human chromosome 2q37.3 based on its similarity to the cerebroside 3'-sulfotransferase (CST) cDNA (Honke, K., Tsuda, M., Hirahara, Y., Ishii, A., Makita, A., and Wada, Y. (1997) J. Biol. Chem. 272, 4864-4868).
T3 437-597 Sentence denotes A full-length cDNA was obtained by reverse transcription-polymerase chain reaction and 5'- and 3'-rapid amplification of cDNA ends analyses of human colon mRNA.
T4 598-719 Sentence denotes The isolated cDNA clone predicts that the protein is a type II transmembrane protein composed of 398 amino acid residues.
T5 720-793 Sentence denotes The amino acid sequence indicates 33% identity to the human CST sequence.
T6 794-1139 Sentence denotes A recombinant protein that is expressed in COS-1 cells showed no CST activity, but did show sulfotransferase activities toward oligosaccharides containing nonreducing beta-galactosides such as N-acetyllactosamine, lactose, lacto-N-tetraose (Lc4), lacto-N-neotetraose (nLc4), and Gal beta 1-3GalNAc alpha-benzyl (O-glycan core 1 oligosaccharide).
T7 1140-1296 Sentence denotes To characterize the cloned sulfotransferase, a sulfotransferase assay method was developed that uses pyridylaminated (PA) Lc4 and nLc4 as enzyme substrates.
T8 1297-1445 Sentence denotes The enzyme product using PA-Lc4 as an acceptor was identified as HSO(3)-3Gal beta 1-3GlcNAc beta 1-3Gal beta 1- 4Glc-PA by two-dimensional (1)H NMR.
T9 1446-1604 Sentence denotes Kinetics studies suggested that GP3ST is able to act on both type 1 (Gal beta 1-3GlcNAc-R) and type 2 (Gal beta 1-4GlcNAc-R) chains with a similar efficiency.
T10 1605-1962 Sentence denotes In situ hybridization demonstrated that the GP3ST gene is expressed in epithelial cells lining the lower to middle layer of the crypts in colonic mucosa, hepatocytes surrounding the central vein of the liver, extravillous cytotrophoblasts in the basal plate and septum of the placenta, renal tubules of the kidney, and neuronal cells of the cerebral cortex.
T11 1963-2064 Sentence denotes The results of this study indicate the existence of a novel beta-Gal-3'-sulfotransferase gene family.

GlyCosmos15-NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 44-49 OrganismTaxon denotes human 9606
T2 227-232 OrganismTaxon denotes human 9606
T3 580-585 OrganismTaxon denotes human 9606
T4 774-779 OrganismTaxon denotes human 9606

GlyCosmos15-FMA

Id Subject Object Predicate Lexical cue db_id
T1 233-243 Body_part denotes chromosome FMA:67093
T2 586-591 Body_part denotes colon FMA:14543
T3 1676-1692 Body_part denotes epithelial cells FMA:66768
T4 1743-1757 Body_part denotes colonic mucosa FMA:14984
T5 1759-1770 Body_part denotes hepatocytes FMA:14515
T6 1787-1812 Body_part denotes central vein of the liver FMA:17544
T7 1827-1843 Body_part denotes cytotrophoblasts FMA:83039
T8 1881-1889 Body_part denotes placenta FMA:0329329|FMA:63934
T10 1891-1904 Body_part denotes renal tubules FMA:15627
T11 1912-1918 Body_part denotes kidney FMA:7203
T12 1946-1961 Body_part denotes cerebral cortex FMA:61830

GlyCosmos15-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 586-591 Body_part denotes colon http://purl.obolibrary.org/obo/MAT_0000526
T2 1743-1750 Body_part denotes colonic http://purl.obolibrary.org/obo/MAT_0000526
T3 1795-1799 Body_part denotes vein http://purl.obolibrary.org/obo/MAT_0000037
T4 1807-1812 Body_part denotes liver http://purl.obolibrary.org/obo/MAT_0000097
T5 1881-1889 Body_part denotes placenta http://purl.obolibrary.org/obo/MAT_0000279
T6 1912-1918 Body_part denotes kidney http://purl.obolibrary.org/obo/MAT_0000119
T7 1946-1961 Body_part denotes cerebral cortex http://purl.obolibrary.org/obo/MAT_0000108

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 44-49 OrganismTaxon denotes human 9606
T2 227-232 OrganismTaxon denotes human 9606
T3 580-585 OrganismTaxon denotes human 9606
T4 774-779 OrganismTaxon denotes human 9606

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 233-243 Body_part denotes chromosome http://purl.obolibrary.org/obo/GO_0005694
T2 586-591 Body_part denotes colon http://purl.obolibrary.org/obo/UBERON_0001155
T3 661-674 Body_part denotes transmembrane http://purl.obolibrary.org/obo/GO_0016020
T4 1676-1692 Body_part denotes epithelial cells http://purl.obolibrary.org/obo/CL_0000066
T5 1720-1725 Body_part denotes layer http://purl.obolibrary.org/obo/UBERON_0000119|http://purl.obolibrary.org/obo/UBERON_0022303
T7 1743-1757 Body_part denotes colonic mucosa http://purl.obolibrary.org/obo/UBERON_0000317
T8 1759-1770 Body_part denotes hepatocytes http://purl.obolibrary.org/obo/CL_0000182
T9 1787-1799 Body_part denotes central vein http://purl.obolibrary.org/obo/UBERON_0006841
T10 1807-1812 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T11 1827-1843 Body_part denotes cytotrophoblasts http://purl.obolibrary.org/obo/UBERON_0000319
T12 1851-1862 Body_part denotes basal plate http://purl.obolibrary.org/obo/UBERON_0004064|http://purl.obolibrary.org/obo/UBERON_4300019|http://purl.obolibrary.org/obo/UBERON_4300020
T15 1867-1873 Body_part denotes septum http://purl.obolibrary.org/obo/UBERON_0000446|http://purl.obolibrary.org/obo/UBERON_0003037
T17 1881-1889 Body_part denotes placenta http://purl.obolibrary.org/obo/UBERON_0001987
T18 1891-1911 Body_part denotes renal tubules of the http://purl.obolibrary.org/obo/UBERON_0001231|http://purl.obolibrary.org/obo/UBERON_0009773
T20 1912-1918 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T21 1946-1961 Body_part denotes cerebral cortex http://purl.obolibrary.org/obo/UBERON_0000956

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 586-591 Body_part denotes colon http://purl.obolibrary.org/obo/MAT_0000526
T2 1743-1750 Body_part denotes colonic http://purl.obolibrary.org/obo/MAT_0000526
T3 1795-1799 Body_part denotes vein http://purl.obolibrary.org/obo/MAT_0000037
T4 1807-1812 Body_part denotes liver http://purl.obolibrary.org/obo/MAT_0000097
T5 1881-1889 Body_part denotes placenta http://purl.obolibrary.org/obo/MAT_0000279
T6 1912-1918 Body_part denotes kidney http://purl.obolibrary.org/obo/MAT_0000119
T7 1946-1961 Body_part denotes cerebral cortex http://purl.obolibrary.org/obo/MAT_0000108

GlyCosmos15-Lectin

Id Subject Object Predicate Lexical cue
T1 55-60 GL_000491 denotes Gal-3
T2 2028-2033 GL_000491 denotes Gal-3

Lectin_test

Id Subject Object Predicate Lexical cue
T1 55-60 GL_000491 denotes Gal-3
T2 2028-2033 GL_000491 denotes Gal-3