PubMed:11006334
Annnotations
Oryza-OGER
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-4 | http://purl.obolibrary.org/obo/SO_0001743 | denotes | Loss |
| T2 | 22-26 | http://id.nlm.nih.gov/mesh/D012275 | denotes | rice |
| T3 | 22-26 | http://purl.bioontology.org/ontology/RXNORM/1311040 | denotes | rice |
| T4 | 22-26 | http://www.ncbi.nlm.nih.gov/taxonomy/4530 | denotes | rice |
| T5 | 27-42 | http://purl.obolibrary.org/obo/CHEBI_22921 | denotes | brassinosteroid |
| T6 | 27-55 | D61 | denotes | brassinosteroid insensitive1 |
| T7 | 56-63 | http://purl.obolibrary.org/obo/SO_0000853 | denotes | homolog |
| T8 | 73-82 | http://purl.obolibrary.org/obo/GO_0033269 | denotes | internode |
| T9 | 94-97 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T10 | 94-97 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T11 | 113-119 | http://purl.obolibrary.org/obo/UBERON_0022303 | denotes | lamina |
| T12 | 113-119 | http://purl.obolibrary.org/obo/UBERON_0000957 | denotes | lamina |
| T13 | 113-119 | http://purl.obolibrary.org/obo/UBERON_0004529 | denotes | lamina |
| T14 | 120-125 | http://purl.obolibrary.org/obo/UBERON_0004905 | denotes | joint |
| T15 | 120-125 | http://purl.obolibrary.org/obo/UBERON_0000982 | denotes | joint |
| T16 | 127-143 | http://id.nlm.nih.gov/mesh/D060406 | denotes | Brassinosteroids |
| T17 | 127-143 | http://purl.obolibrary.org/obo/CHEBI_22921 | denotes | Brassinosteroids |
| T18 | 127-143 | http://id.nlm.nih.gov/mesh/D060406 | denotes | Brassinosteroids |
| T19 | 145-148 | http://www.ncbi.nlm.nih.gov/taxonomy/11246 | denotes | BRs |
| T20 | 150-153 | http://purl.obolibrary.org/obo/SO_0001180 | denotes | are |
| T21 | 150-153 | http://purl.obolibrary.org/obo/SO_0001853 | denotes | are |
| T22 | 154-159 | http://id.nlm.nih.gov/mesh/D010944 | denotes | plant |
| T23 | 160-166 | http://purl.obolibrary.org/obo/GO_0040007 | denotes | growth |
| T24 | 177-184 | http://purl.obolibrary.org/obo/SO_0000782 | denotes | natural |
| T25 | 177-193 | http://id.nlm.nih.gov/mesh/D001688 | denotes | natural products |
| T26 | 177-193 | http://id.nlm.nih.gov/mesh/D001688 | denotes | natural products |
| T27 | 203-206 | http://purl.obolibrary.org/obo/PR_Q9NZC7 | denotes | for |
| T28 | 203-206 | http://purl.obolibrary.org/obo/PR_000001036 | denotes | for |
| T29 | 207-212 | http://id.nlm.nih.gov/mesh/D010944 | denotes | plant |
| T30 | 213-219 | http://purl.obolibrary.org/obo/GO_0040007 | denotes | growth |
| T31 | 220-223 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T32 | 220-223 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T33 | 224-235 | http://purl.obolibrary.org/obo/GO_0032502 | denotes | development |
| T34 | 325-330 | http://id.nlm.nih.gov/mesh/D007210 | denotes | auxin |
| T35 | 325-330 | http://id.nlm.nih.gov/mesh/D007210 | denotes | auxin |
| T36 | 325-330 | http://purl.obolibrary.org/obo/CHEBI_22676 | denotes | auxin |
| T37 | 355-361 | http://purl.obolibrary.org/obo/UBERON_0022303 | denotes | lamina |
| T38 | 355-361 | http://purl.obolibrary.org/obo/UBERON_0000957 | denotes | lamina |
| T39 | 355-361 | http://purl.obolibrary.org/obo/UBERON_0004529 | denotes | lamina |
| T40 | 362-367 | http://purl.obolibrary.org/obo/UBERON_0004905 | denotes | joint |
| T41 | 362-367 | http://purl.obolibrary.org/obo/UBERON_0000982 | denotes | joint |
| T42 | 371-375 | http://id.nlm.nih.gov/mesh/D012275 | denotes | rice |
| T43 | 371-375 | http://purl.bioontology.org/ontology/RXNORM/1311040 | denotes | rice |
| T44 | 371-375 | http://www.ncbi.nlm.nih.gov/taxonomy/4530 | denotes | rice |
| T45 | 441-445 | http://id.nlm.nih.gov/mesh/D012275 | denotes | rice |
| T46 | 441-445 | http://purl.bioontology.org/ontology/RXNORM/1311040 | denotes | rice |
| T47 | 441-445 | http://www.ncbi.nlm.nih.gov/taxonomy/4530 | denotes | rice |
| T48 | 449-454 | http://www.ncbi.nlm.nih.gov/taxonomy/32644 | denotes | other |
| T49 | 455-460 | http://id.nlm.nih.gov/mesh/D006109 | denotes | grass |
| T50 | 455-460 | http://purl.obolibrary.org/obo/PR_Q9VB68 | denotes | grass |
| T51 | 502-505 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T52 | 502-505 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T53 | 538-542 | http://id.nlm.nih.gov/mesh/D012275 | denotes | rice |
| T54 | 538-542 | http://purl.bioontology.org/ontology/RXNORM/1311040 | denotes | rice |
| T55 | 538-542 | http://www.ncbi.nlm.nih.gov/taxonomy/4530 | denotes | rice |
| T56 | 543-548 | D57 | denotes | dwarf |
| T57 | 543-548 | BRD1 | denotes | dwarf |
| T58 | 557-560 | D61 | denotes | d61 |
| T59 | 607-616 | http://purl.obolibrary.org/obo/SO_0000817 | denotes | wild type |
| T60 | 621-627 | http://purl.obolibrary.org/obo/SO_0000788 | denotes | cloned |
| T61 | 630-634 | http://id.nlm.nih.gov/mesh/D012275 | denotes | rice |
| T62 | 630-634 | http://purl.bioontology.org/ontology/RXNORM/1311040 | denotes | rice |
| T63 | 630-634 | http://www.ncbi.nlm.nih.gov/taxonomy/4530 | denotes | rice |
| T64 | 635-639 | http://purl.obolibrary.org/obo/SO_0000704 | denotes | gene |
| T65 | 641-647 | D61 | denotes | OsBRI1 |
| T66 | 641-647 | http://www.uniprot.org/uniprot/Q942F3 | denotes | OsBRI1 |
| T67 | 664-672 | http://purl.obolibrary.org/obo/SO_0000001 | denotes | sequence |
| T68 | 699-710 | http://id.nlm.nih.gov/mesh/D017360 | denotes | Arabidopsis |
| T69 | 711-714 | http://www.uniprot.org/uniprot/O89051 | denotes | BRI |
| T70 | 711-714 | http://www.uniprot.org/uniprot/Q5R876 | denotes | BRI |
| T71 | 711-714 | http://www.uniprot.org/uniprot/Q5XIE8 | denotes | BRI |
| T72 | 711-714 | http://www.uniprot.org/uniprot/A5A6H8 | denotes | BRI |
| T73 | 711-714 | http://www.uniprot.org/uniprot/Q60HC1 | denotes | BRI |
| T74 | 711-714 | http://purl.obolibrary.org/obo/PR_Q9Y287 | denotes | BRI |
| T75 | 711-714 | http://www.uniprot.org/uniprot/Q52N47 | denotes | BRI |
| T76 | 711-714 | http://www.uniprot.org/uniprot/Q9Y287 | denotes | BRI |
| T77 | 711-714 | http://purl.obolibrary.org/obo/PR_000032246 | denotes | BRI |
| T78 | 711-714 | http://www.uniprot.org/uniprot/Q3T0P7 | denotes | BRI |
| T79 | 715-719 | http://purl.obolibrary.org/obo/SO_0000704 | denotes | gene |
| T80 | 758-764 | http://id.nlm.nih.gov/mesh/D010770 | denotes | kinase |
| T81 | 799-805 | D61 | denotes | OsBRI1 |
| T82 | 799-805 | http://www.uniprot.org/uniprot/Q942F3 | denotes | OsBRI1 |
| T83 | 806-810 | http://purl.obolibrary.org/obo/SO_0000704 | denotes | gene |
| T84 | 836-839 | D61 | denotes | d61 |
| T85 | 847-853 | http://purl.obolibrary.org/obo/SO_0000984 | denotes | Single |
| T86 | 854-864 | http://purl.obolibrary.org/obo/CHEBI_36976 | denotes | nucleotide |
| T87 | 911-914 | D61 | denotes | d61 |
| T88 | 942-947 | http://purl.obolibrary.org/obo/CHEBI_46882 | denotes | amino |
| T89 | 942-952 | http://purl.obolibrary.org/obo/SO_0001237 | denotes | amino acid |
| T90 | 942-952 | http://purl.obolibrary.org/obo/CHEBI_33709 | denotes | amino acid |
| T91 | 942-952 | http://purl.obolibrary.org/obo/CHEBI_33704 | denotes | amino acid |
| T92 | 948-952 | http://purl.obolibrary.org/obo/CHEBI_37527 | denotes | acid |
| T93 | 982-994 | http://id.nlm.nih.gov/mesh/D010455 | denotes | polypeptides |
| T94 | 982-994 | http://id.nlm.nih.gov/mesh/D010455 | denotes | polypeptides |
| T95 | 982-994 | http://purl.obolibrary.org/obo/CHEBI_15841 | denotes | polypeptides |
| T96 | 1036-1042 | D61 | denotes | OsBRI1 |
| T97 | 1036-1042 | http://www.uniprot.org/uniprot/Q942F3 | denotes | OsBRI1 |
| T98 | 1050-1056 | http://purl.obolibrary.org/obo/SO_0000839 | denotes | region |
| T99 | 1050-1056 | http://purl.obolibrary.org/obo/SO_0000001 | denotes | region |
| T100 | 1075-1078 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T101 | 1075-1078 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T102 | 1075-1080 | http://web.expasy.org/cellosaurus/CVCL_B528 | denotes | and 3 |
| T103 | 1079-1080 | AMT1;2 | denotes | 3 |
| T104 | 1107-1110 | D61 | denotes | d61 |
| T105 | 1111-1117 | http://id.nlm.nih.gov/mesh/D010944 | denotes | plants |
| T106 | 1135-1143 | http://purl.obolibrary.org/obo/SO_0000109 | denotes | mutation |
| T107 | 1159-1168 | http://purl.obolibrary.org/obo/SO_0000817 | denotes | wild-type |
| T108 | 1180-1190 | http://purl.obolibrary.org/obo/SO_0000781 | denotes | Transgenic |
| T109 | 1180-1197 | http://id.nlm.nih.gov/mesh/D030821 | denotes | Transgenic plants |
| T110 | 1191-1197 | http://id.nlm.nih.gov/mesh/D010944 | denotes | plants |
| T111 | 1211-1220 | http://purl.obolibrary.org/obo/SO_0000077 | denotes | antisense |
| T112 | 1221-1227 | http://purl.obolibrary.org/obo/SO_0001111 | denotes | strand |
| T113 | 1235-1241 | D61 | denotes | OsBRI1 |
| T114 | 1235-1241 | http://www.uniprot.org/uniprot/Q942F3 | denotes | OsBRI1 |
| T115 | 1242-1252 | http://purl.obolibrary.org/obo/SO_0000673 | denotes | transcript |
| T116 | 1317-1320 | D61 | denotes | d61 |
| T117 | 1352-1358 | D61 | denotes | OsBRI1 |
| T118 | 1352-1358 | http://www.uniprot.org/uniprot/Q942F3 | denotes | OsBRI1 |
| T119 | 1380-1386 | http://purl.obolibrary.org/obo/GO_0040007 | denotes | growth |
| T120 | 1387-1390 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T121 | 1387-1390 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T122 | 1405-1414 | http://purl.obolibrary.org/obo/UBERON_0004529 | denotes | processes |
| T123 | 1418-1422 | http://id.nlm.nih.gov/mesh/D012275 | denotes | rice |
| T124 | 1418-1422 | http://purl.bioontology.org/ontology/RXNORM/1311040 | denotes | rice |
| T125 | 1418-1422 | http://www.ncbi.nlm.nih.gov/taxonomy/4530 | denotes | rice |
| T126 | 1438-1447 | http://purl.obolibrary.org/obo/GO_0033269 | denotes | internode |
| T127 | 1476-1485 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | formation |
| T128 | 1514-1517 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T129 | 1514-1517 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T130 | 1549-1558 | http://purl.obolibrary.org/obo/GO_0033269 | denotes | internode |
| T131 | 1567-1568 | AMT1;3 | denotes | 2 |
| T132 | 1585-1591 | http://purl.obolibrary.org/obo/UBERON_0022303 | denotes | lamina |
| T133 | 1585-1591 | http://purl.obolibrary.org/obo/UBERON_0000957 | denotes | lamina |
| T134 | 1585-1591 | http://purl.obolibrary.org/obo/UBERON_0004529 | denotes | lamina |
| T135 | 1592-1597 | http://purl.obolibrary.org/obo/UBERON_0004905 | denotes | joint |
| T136 | 1592-1597 | http://purl.obolibrary.org/obo/UBERON_0000982 | denotes | joint |
| T137 | 1599-1602 | http://purl.obolibrary.org/obo/PR_P49258 | denotes | and |
| T138 | 1599-1602 | http://www.ncbi.nlm.nih.gov/taxonomy/1481724 | denotes | and |
| T139 | 1599-1605 | http://web.expasy.org/cellosaurus/CVCL_B528 | denotes | and (3 |
| T140 | 1604-1605 | AMT1;2 | denotes | 3 |
| T141 | 1607-1625 | http://purl.obolibrary.org/obo/GO_0009647 | denotes | skotomorphogenesis |
21k_plant_trait_mention
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 538-548 | xzyao:11177 | denotes | rice dwarf |
| M_1 | 543-548 | funRiceGene:135 | denotes | dwarf |
| M_2 | 213-219 | WTO:0000021, funRiceGene:221 | denotes | growth |
| M_3 | 1380-1386 | WTO:0000021, funRiceGene:221 | denotes | growth |
| M_4 | 207-219 | funRiceGene:44, xzyao:2989 | denotes | plant growth |
| M_5 | 942-960 | xzyao:6871 | denotes | amino acid changes |
| M_6 | 1505-1513 | funRiceGene:300 | denotes | meristem |
| M_7 | 1493-1513 | PO:0006073, funRiceGene:527, xzyao:12768 | denotes | intercalary meristem |
| M_8 | 355-361 | PO:0025060, funRiceGene:350 | denotes | lamina |
| M_9 | 1585-1591 | PO:0025060, funRiceGene:350 | denotes | lamina |
| M_10 | 355-367 | funRiceGene:131, xzyao:11928 | denotes | lamina joint |
| M_11 | 325-330 | hunflair:NA:Chemical | denotes | auxin |
| M_12 | 27-42 | hunflair:NA:Chemical | denotes | brassinosteroid |
| M_13 | 942-952 | hunflair:NA:Chemical | denotes | amino acid |
| M_14 | 22-26 | hunflair:NA:Species | denotes | rice |
| M_15 | 371-375 | hunflair:NA:Species | denotes | rice |
| M_16 | 441-445 | hunflair:NA:Species | denotes | rice |
| M_17 | 538-542 | hunflair:NA:Species | denotes | rice |
| M_18 | 630-634 | hunflair:NA:Species | denotes | rice |
| M_19 | 1418-1422 | hunflair:NA:Species | denotes | rice |
| M_20 | 699-710 | hunflair:NA:Species | denotes | Arabidopsis |
| M_21 | 746-764 | hunflair:NA:Gene | denotes | BR receptor kinase |
| M_22 | 641-647 | hunflair:NA:Gene | denotes | OsBRI1 |
| M_23 | 799-805 | hunflair:NA:Gene | denotes | OsBRI1 |
| M_24 | 1036-1042 | hunflair:NA:Gene | denotes | OsBRI1 |
| M_25 | 1235-1241 | hunflair:NA:Gene | denotes | OsBRI1 |
| M_26 | 1352-1358 | hunflair:NA:Gene | denotes | OsBRI1 |
| M_27 | 1317-1328 | hunflair:NA:Gene | denotes | d61 mutants |
| M_28 | 711-714 | hunflair:NA:Gene | denotes | BRI |
| M_29 | 127-143 | hunflair:NA:Chemical | denotes | Brassinosteroids |
| M_30 | 836-845 | hunflair:NA:Gene | denotes | d61 locus |
| M_31 | 292-294 | hunflair:NA:Gene | denotes | BR |
| M_32 | 435-437 | hunflair:NA:Gene | denotes | BR |
| M_33 | 588-590 | hunflair:NA:Gene | denotes | BR |
| M_34 | 746-748 | hunflair:NA:Gene | denotes | BR |
| M_35 | 911-922 | hunflair:NA:Gene | denotes | d61 alleles |
| M_36 | 557-560 | hunflair:NA:Gene | denotes | d61 |
| M_37 | 836-839 | hunflair:NA:Gene | denotes | d61 |
| M_38 | 911-914 | hunflair:NA:Gene | denotes | d61 |
| M_39 | 1107-1110 | hunflair:NA:Gene | denotes | d61 |
| M_40 | 1317-1320 | hunflair:NA:Gene | denotes | d61 |
| M_41 | 699-710 | pubtator:3702:Species | denotes | Arabidopsis |
| M_42 | 127-143 | pubtator:MESH:D060406:Chemical | denotes | Brassinosteroids |
| M_43 | 22-26 | pubtator:4530:Species | denotes | rice |
| M_44 | 371-375 | pubtator:4530:Species | denotes | rice |
| M_45 | 441-445 | pubtator:4530:Species | denotes | rice |
| M_46 | 538-542 | pubtator:4530:Species | denotes | rice |
| M_47 | 630-634 | pubtator:4530:Species | denotes | rice |
| M_48 | 1418-1422 | pubtator:4530:Species | denotes | rice |
OryzaGP_2021_v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 557-560 | http://identifiers.org/oryzabase.gene/2018 | denotes | d61 |
| T2 | 641-647 | http://identifiers.org/oryzabase.gene/21679 | denotes | OsBRI1 |
| T3 | 641-647 | http://identifiers.org/oryzabase.gene/2018 | denotes | OsBRI1 |
| T4 | 799-805 | http://identifiers.org/oryzabase.gene/21679 | denotes | OsBRI1 |
| T5 | 799-805 | http://identifiers.org/oryzabase.gene/2018 | denotes | OsBRI1 |
| T6 | 836-839 | http://identifiers.org/oryzabase.gene/2018 | denotes | d61 |
| T7 | 911-914 | http://identifiers.org/oryzabase.gene/2018 | denotes | d61 |
| T8 | 1036-1042 | http://identifiers.org/oryzabase.gene/21679 | denotes | OsBRI1 |
| T9 | 1036-1042 | http://identifiers.org/oryzabase.gene/2018 | denotes | OsBRI1 |
| T10 | 1107-1110 | http://identifiers.org/oryzabase.gene/2018 | denotes | d61 |
| T11 | 1235-1241 | http://identifiers.org/oryzabase.gene/21679 | denotes | OsBRI1 |
| T12 | 1235-1241 | http://identifiers.org/oryzabase.gene/2018 | denotes | OsBRI1 |
| T13 | 1317-1320 | http://identifiers.org/oryzabase.gene/2018 | denotes | d61 |
| T14 | 1352-1358 | http://identifiers.org/oryzabase.gene/21679 | denotes | OsBRI1 |
| T15 | 1352-1358 | http://identifiers.org/oryzabase.gene/2018 | denotes | OsBRI1 |
| T91387 | 557-560 | http://identifiers.org/rapdb.locus/Os01g0718300 | denotes | d61 |
| T23644 | 641-647 | http://identifiers.org/rapdb.locus/Os10g0114400 | denotes | OsBRI1 |
| T94849 | 641-647 | http://identifiers.org/rapdb.locus/Os01g0718300 | denotes | OsBRI1 |
| T50795 | 799-805 | http://identifiers.org/rapdb.locus/Os10g0114400 | denotes | OsBRI1 |
| T55972 | 799-805 | http://identifiers.org/rapdb.locus/Os01g0718300 | denotes | OsBRI1 |
| T98506 | 836-839 | http://identifiers.org/rapdb.locus/Os01g0718300 | denotes | d61 |
| T79583 | 911-914 | http://identifiers.org/rapdb.locus/Os01g0718300 | denotes | d61 |
| T67944 | 1036-1042 | http://identifiers.org/rapdb.locus/Os10g0114400 | denotes | OsBRI1 |
| T36210 | 1036-1042 | http://identifiers.org/rapdb.locus/Os01g0718300 | denotes | OsBRI1 |
| T55575 | 1107-1110 | http://identifiers.org/rapdb.locus/Os01g0718300 | denotes | d61 |
| T56842 | 1235-1241 | http://identifiers.org/rapdb.locus/Os10g0114400 | denotes | OsBRI1 |
| T3357 | 1235-1241 | http://identifiers.org/rapdb.locus/Os01g0718300 | denotes | OsBRI1 |
| T94863 | 1317-1320 | http://identifiers.org/rapdb.locus/Os01g0718300 | denotes | d61 |
| T36061 | 1352-1358 | http://identifiers.org/rapdb.locus/Os10g0114400 | denotes | OsBRI1 |
| T27947 | 1352-1358 | http://identifiers.org/rapdb.locus/Os01g0718300 | denotes | OsBRI1 |
OryzaGP_2022
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 543-548 | http://identifiers.org/oryzabase.gene/846 | denotes | dwarf |
| T2 | 749-764 | http://identifiers.org/oryzabase.gene/24647 | denotes | receptor kinase |
| T3 | 1435-1436 | http://identifiers.org/oryzabase.gene/11216 | denotes | 1 |
pqqtest_sentence
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 749-764 | funRiceGene:186, xzyao:9389 | denotes | receptor kinase |
| M_1 | 224-235 | WTO:0000011, funRiceGene:359 | denotes | development |
| M_2 | 758-764 | funRiceGene:512 | denotes | kinase |
| M_3 | 630-639 | xzyao:12527 | denotes | rice gene |
| M_4 | 758-764 | funRiceGene:139 | denotes | kinase |
| M_5 | 113-119 | PO:0025060, funRiceGene:350 | denotes | lamina |
| M_6 | 355-361 | PO:0025060, funRiceGene:350 | denotes | lamina |
| M_7 | 1585-1591 | PO:0025060, funRiceGene:350 | denotes | lamina |
| M_8 | 1372-1386 | xzyao:7440 | denotes | various growth |
| M_9 | 746-757 | xzyao:33003 | denotes | BR receptor |
| M_10 | 888-903 | xzyao:23351 | denotes | different sites |
| M_11 | 282-294 | xzyao:34047 | denotes | exogenous BR |
| M_12 | 1505-1513 | funRiceGene:300 | denotes | meristem |
| M_13 | 160-166 | WTO:0000021, funRiceGene:221 | denotes | growth |
| M_14 | 213-219 | WTO:0000021, funRiceGene:221 | denotes | growth |
| M_15 | 1380-1386 | WTO:0000021, funRiceGene:221 | denotes | growth |
| M_16 | 543-548 | funRiceGene:135 | denotes | dwarf |
| M_17 | 325-330 | funRiceGene:285 | denotes | auxin |
| M_18 | 1169-1178 | WTO:0000005 | denotes | phenotype |
| M_19 | 113-125 | funRiceGene:131, xzyao:41856 | denotes | lamina joint |
| M_20 | 355-367 | funRiceGene:131, xzyao:41856 | denotes | lamina joint |
| M_21 | 1585-1597 | funRiceGene:131, xzyao:41856 | denotes | lamina joint |
| M_22 | 1493-1513 | PO:0006073, funRiceGene:527, xzyao:25675 | denotes | intercalary meristem |
| M_23 | 434-438 | funRiceGene:255 | denotes | BR |
| M_24 | 587-591 | funRiceGene:255 | denotes | BR |
| M_25 | 745-749 | funRiceGene:255 | denotes | BR |
| M_26 | 73-93 | funRiceGene:333, xzyao:23240 | denotes | internode elongation |
| M_27 | 1438-1458 | funRiceGene:333, xzyao:23240 | denotes | internode elongation |
| M_28 | 942-960 | xzyao:22960 | denotes | amino acid changes |
| M_29 | 27-55 | xzyao:9788 | denotes | brassinosteroid insensitive1 |
| M_30 | 455-468 | xzyao:10532 | denotes | grass species |
| M_31 | 154-166 | funRiceGene:44, xzyao:29681 | denotes | plant growth |
| M_32 | 207-219 | funRiceGene:44, xzyao:29681 | denotes | plant growth |
| M_33 | 27-42 | funRiceGene:392 | denotes | brassinosteroid |
| M_34 | 538-548 | xzyao:24469 | denotes | rice dwarf |
| M_35 | 27-42 | funRiceGene:133 | denotes | brassinosteroid |
| M_36 | 543-555 | xzyao:22000 | denotes | dwarf mutant |
| M_37 | 1391-1414 | xzyao:7465 | denotes | developmental processes |
| M_38 | 538-555 | xzyao:22804 | denotes | rice dwarf mutant |
| M_39 | 942-952 | xzyao:10364 | denotes | amino acid |
| M_40 | 292-294 | hunflair:NA:Gene | denotes | BR |
| M_41 | 435-437 | hunflair:NA:Gene | denotes | BR |
| M_42 | 588-590 | hunflair:NA:Gene | denotes | BR |
| M_43 | 746-748 | hunflair:NA:Gene | denotes | BR |
| M_44 | 27-42 | hunflair:NA:Chemical | denotes | brassinosteroid |
| M_45 | 557-560 | hunflair:NA:Gene | denotes | d61 |
| M_46 | 836-839 | hunflair:NA:Gene | denotes | d61 |
| M_47 | 911-914 | hunflair:NA:Gene | denotes | d61 |
| M_48 | 1107-1110 | hunflair:NA:Gene | denotes | d61 |
| M_49 | 1317-1320 | hunflair:NA:Gene | denotes | d61 |
| M_50 | 911-922 | hunflair:NA:Gene | denotes | d61 alleles |
| M_51 | 699-710 | hunflair:NA:Species | denotes | Arabidopsis |
| M_52 | 942-952 | hunflair:NA:Chemical | denotes | amino acid |
| M_53 | 1317-1328 | hunflair:NA:Gene | denotes | d61 mutants |
| M_54 | 127-143 | hunflair:NA:Chemical | denotes | Brassinosteroids |
| M_55 | 641-647 | hunflair:NA:Gene | denotes | OsBRI1 |
| M_56 | 799-805 | hunflair:NA:Gene | denotes | OsBRI1 |
| M_57 | 1036-1042 | hunflair:NA:Gene | denotes | OsBRI1 |
| M_58 | 1235-1241 | hunflair:NA:Gene | denotes | OsBRI1 |
| M_59 | 1352-1358 | hunflair:NA:Gene | denotes | OsBRI1 |
| M_60 | 325-330 | hunflair:NA:Chemical | denotes | auxin |
| M_61 | 711-714 | hunflair:NA:Gene | denotes | BRI |
| M_62 | 836-845 | hunflair:NA:Gene | denotes | d61 locus |
| M_63 | 746-764 | hunflair:NA:Gene | denotes | BR receptor kinase |
| M_64 | 22-26 | hunflair:NA:Species | denotes | rice |
| M_65 | 371-375 | hunflair:NA:Species | denotes | rice |
| M_66 | 441-445 | hunflair:NA:Species | denotes | rice |
| M_67 | 538-542 | hunflair:NA:Species | denotes | rice |
| M_68 | 630-634 | hunflair:NA:Species | denotes | rice |
| M_69 | 1418-1422 | hunflair:NA:Species | denotes | rice |
| M_70 | 699-710 | pubtator:3702:Species | denotes | Arabidopsis |
| M_71 | 22-26 | pubtator:4530:Species | denotes | rice |
| M_72 | 371-375 | pubtator:4530:Species | denotes | rice |
| M_73 | 441-445 | pubtator:4530:Species | denotes | rice |
| M_74 | 538-542 | pubtator:4530:Species | denotes | rice |
| M_75 | 630-634 | pubtator:4530:Species | denotes | rice |
| M_76 | 1418-1422 | pubtator:4530:Species | denotes | rice |
| M_77 | 127-143 | pubtator:MESH:D060406:Chemical | denotes | Brassinosteroids |
PMID_GLOBAL
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 575-584 | DiseaseOrPhenotypicFeature | denotes | sensitive | 0000605 |
OryzaGP_2021_FLAIR
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 292-294 | hunflair:NA:Gene | denotes | BR |
| M_1 | 435-437 | hunflair:NA:Gene | denotes | BR |
| M_2 | 588-590 | hunflair:NA:Gene | denotes | BR |
| M_3 | 746-748 | hunflair:NA:Gene | denotes | BR |
| M_4 | 127-143 | hunflair:NA:Chemical | denotes | Brassinosteroids |
| M_5 | 325-330 | hunflair:NA:Chemical | denotes | auxin |
| M_6 | 711-714 | hunflair:NA:Gene | denotes | BRI |
| M_7 | 942-952 | hunflair:NA:Chemical | denotes | amino acid |
| M_8 | 22-26 | hunflair:NA:Species | denotes | rice |
| M_9 | 371-375 | hunflair:NA:Species | denotes | rice |
| M_10 | 441-445 | hunflair:NA:Species | denotes | rice |
| M_11 | 538-542 | hunflair:NA:Species | denotes | rice |
| M_12 | 630-634 | hunflair:NA:Species | denotes | rice |
| M_13 | 1418-1422 | hunflair:NA:Species | denotes | rice |
| M_14 | 27-42 | hunflair:NA:Chemical | denotes | brassinosteroid |
| M_15 | 836-845 | hunflair:NA:Gene | denotes | d61 locus |
| M_16 | 1317-1328 | hunflair:NA:Gene | denotes | d61 mutants |
| M_17 | 557-560 | hunflair:NA:Gene | denotes | d61 |
| M_18 | 836-839 | hunflair:NA:Gene | denotes | d61 |
| M_19 | 911-914 | hunflair:NA:Gene | denotes | d61 |
| M_20 | 1107-1110 | hunflair:NA:Gene | denotes | d61 |
| M_21 | 1317-1320 | hunflair:NA:Gene | denotes | d61 |
| M_22 | 911-922 | hunflair:NA:Gene | denotes | d61 alleles |
| M_23 | 641-647 | hunflair:NA:Gene | denotes | OsBRI1 |
| M_24 | 799-805 | hunflair:NA:Gene | denotes | OsBRI1 |
| M_25 | 1036-1042 | hunflair:NA:Gene | denotes | OsBRI1 |
| M_26 | 1235-1241 | hunflair:NA:Gene | denotes | OsBRI1 |
| M_27 | 1352-1358 | hunflair:NA:Gene | denotes | OsBRI1 |
| M_28 | 746-764 | hunflair:NA:Gene | denotes | BR receptor kinase |
| M_29 | 699-710 | hunflair:NA:Species | denotes | Arabidopsis |
OryzaGP_2021
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 27-55 | http://identifiers.org/oryzabase.gene/21396 | denotes | brassinosteroid insensitive1 |
| T2 | 543-548 | http://identifiers.org/oryzabase.gene/846 | denotes | dwarf |
| T3 | 543-548 | http://identifiers.org/oryzabase.gene/3037 | denotes | dwarf |
| T4 | 557-560 | http://identifiers.org/oryzabase.gene/2018 | denotes | d61 |
| T5 | 641-647 | http://identifiers.org/oryzabase.gene/21679 | denotes | OsBRI1 |
| T6 | 641-647 | http://identifiers.org/oryzabase.gene/2018 | denotes | OsBRI1 |
| T7 | 799-805 | http://identifiers.org/oryzabase.gene/21679 | denotes | OsBRI1 |
| T8 | 799-805 | http://identifiers.org/oryzabase.gene/2018 | denotes | OsBRI1 |
| T9 | 836-839 | http://identifiers.org/oryzabase.gene/2018 | denotes | d61 |
| T10 | 911-914 | http://identifiers.org/oryzabase.gene/2018 | denotes | d61 |
| T11 | 1036-1042 | http://identifiers.org/oryzabase.gene/21679 | denotes | OsBRI1 |
| T12 | 1036-1042 | http://identifiers.org/oryzabase.gene/2018 | denotes | OsBRI1 |
| T13 | 1107-1110 | http://identifiers.org/oryzabase.gene/2018 | denotes | d61 |
| T14 | 1235-1241 | http://identifiers.org/oryzabase.gene/21679 | denotes | OsBRI1 |
| T15 | 1235-1241 | http://identifiers.org/oryzabase.gene/2018 | denotes | OsBRI1 |
| T16 | 1317-1320 | http://identifiers.org/oryzabase.gene/2018 | denotes | d61 |
| T17 | 1352-1358 | http://identifiers.org/oryzabase.gene/21679 | denotes | OsBRI1 |
| T18 | 1352-1358 | http://identifiers.org/oryzabase.gene/2018 | denotes | OsBRI1 |
| T36320 | 27-55 | http://identifiers.org/ricegap/LOC_Os07g40630 | denotes | brassinosteroid insensitive1 |
| T42827 | 543-548 | http://identifiers.org/ricegap/LOC_Os03g40540 | denotes | dwarf |
| T33857 | 557-560 | http://identifiers.org/ricegap/LOC_Os01g52050 | denotes | d61 |
| T78662 | 641-647 | http://identifiers.org/ricegap/LOC_Os10g02500 | denotes | OsBRI1 |
| T63366 | 641-647 | http://identifiers.org/ricegap/LOC_Os01g52050 | denotes | OsBRI1 |
| T36138 | 799-805 | http://identifiers.org/ricegap/LOC_Os10g02500 | denotes | OsBRI1 |
| T17251 | 799-805 | http://identifiers.org/ricegap/LOC_Os01g52050 | denotes | OsBRI1 |
| T52591 | 836-839 | http://identifiers.org/ricegap/LOC_Os01g52050 | denotes | d61 |
| T47348 | 911-914 | http://identifiers.org/ricegap/LOC_Os01g52050 | denotes | d61 |
| T76968 | 1036-1042 | http://identifiers.org/ricegap/LOC_Os10g02500 | denotes | OsBRI1 |
| T96033 | 1036-1042 | http://identifiers.org/ricegap/LOC_Os01g52050 | denotes | OsBRI1 |
| T62624 | 1107-1110 | http://identifiers.org/ricegap/LOC_Os01g52050 | denotes | d61 |
| T19427 | 1235-1241 | http://identifiers.org/ricegap/LOC_Os10g02500 | denotes | OsBRI1 |
| T18905 | 1235-1241 | http://identifiers.org/ricegap/LOC_Os01g52050 | denotes | OsBRI1 |
| T72384 | 1317-1320 | http://identifiers.org/ricegap/LOC_Os01g52050 | denotes | d61 |
| T64623 | 1352-1358 | http://identifiers.org/ricegap/LOC_Os10g02500 | denotes | OsBRI1 |
| T84561 | 1352-1358 | http://identifiers.org/ricegap/LOC_Os01g52050 | denotes | OsBRI1 |
| T16706 | 27-55 | http://identifiers.org/rapdb.locus/Os07g0597200 | denotes | brassinosteroid insensitive1 |
| T74136 | 543-548 | http://identifiers.org/rapdb.locus/Os03g0602300 | denotes | dwarf |
| T25820 | 557-560 | http://identifiers.org/rapdb.locus/Os01g0718300 | denotes | d61 |
| T79119 | 641-647 | http://identifiers.org/rapdb.locus/Os10g0114400 | denotes | OsBRI1 |
| T10381 | 641-647 | http://identifiers.org/rapdb.locus/Os01g0718300 | denotes | OsBRI1 |
| T39559 | 799-805 | http://identifiers.org/rapdb.locus/Os10g0114400 | denotes | OsBRI1 |
| T10550 | 799-805 | http://identifiers.org/rapdb.locus/Os01g0718300 | denotes | OsBRI1 |
| T89089 | 836-839 | http://identifiers.org/rapdb.locus/Os01g0718300 | denotes | d61 |
| T23013 | 911-914 | http://identifiers.org/rapdb.locus/Os01g0718300 | denotes | d61 |
| T63166 | 1036-1042 | http://identifiers.org/rapdb.locus/Os10g0114400 | denotes | OsBRI1 |
| T35555 | 1036-1042 | http://identifiers.org/rapdb.locus/Os01g0718300 | denotes | OsBRI1 |
| T87512 | 1107-1110 | http://identifiers.org/rapdb.locus/Os01g0718300 | denotes | d61 |
| T44062 | 1235-1241 | http://identifiers.org/rapdb.locus/Os10g0114400 | denotes | OsBRI1 |
| T97234 | 1235-1241 | http://identifiers.org/rapdb.locus/Os01g0718300 | denotes | OsBRI1 |
| T29624 | 1317-1320 | http://identifiers.org/rapdb.locus/Os01g0718300 | denotes | d61 |
| T93930 | 1352-1358 | http://identifiers.org/rapdb.locus/Os10g0114400 | denotes | OsBRI1 |
| T62901 | 1352-1358 | http://identifiers.org/rapdb.locus/Os01g0718300 | denotes | OsBRI1 |
| T10590 | 557-560 | http://identifiers.org/uniprot/Q942F3 | denotes | d61 |
| T86060 | 557-560 | http://identifiers.org/uniprot/Q0ZA03 | denotes | d61 |
| T80332 | 557-560 | http://identifiers.org/uniprot/B9EZ61 | denotes | d61 |
| T64522 | 641-647 | http://identifiers.org/uniprot/Q942F3 | denotes | OsBRI1 |
| T34562 | 641-647 | http://identifiers.org/uniprot/Q0ZA03 | denotes | OsBRI1 |
| T83669 | 641-647 | http://identifiers.org/uniprot/B9EZ61 | denotes | OsBRI1 |
| T63872 | 641-647 | http://identifiers.org/refseq/NP_001064047.2 | denotes | OsBRI1 |
| T46459 | 799-805 | http://identifiers.org/uniprot/Q942F3 | denotes | OsBRI1 |
| T66643 | 799-805 | http://identifiers.org/uniprot/Q0ZA03 | denotes | OsBRI1 |
| T87534 | 799-805 | http://identifiers.org/uniprot/B9EZ61 | denotes | OsBRI1 |
| T76581 | 799-805 | http://identifiers.org/refseq/NP_001064047.2 | denotes | OsBRI1 |
| T5466 | 836-839 | http://identifiers.org/uniprot/Q942F3 | denotes | d61 |
| T93520 | 836-839 | http://identifiers.org/uniprot/Q0ZA03 | denotes | d61 |
| T13149 | 836-839 | http://identifiers.org/uniprot/B9EZ61 | denotes | d61 |
| T15425 | 911-914 | http://identifiers.org/uniprot/Q942F3 | denotes | d61 |
| T39608 | 911-914 | http://identifiers.org/uniprot/Q0ZA03 | denotes | d61 |
| T69392 | 911-914 | http://identifiers.org/uniprot/B9EZ61 | denotes | d61 |
| T65606 | 1036-1042 | http://identifiers.org/uniprot/Q942F3 | denotes | OsBRI1 |
| T19 | 1036-1042 | http://identifiers.org/uniprot/Q0ZA03 | denotes | OsBRI1 |
| T20 | 1036-1042 | http://identifiers.org/uniprot/B9EZ61 | denotes | OsBRI1 |
| T21 | 1036-1042 | http://identifiers.org/refseq/NP_001064047.2 | denotes | OsBRI1 |
| T22 | 1107-1110 | http://identifiers.org/uniprot/Q942F3 | denotes | d61 |
| T23 | 1107-1110 | http://identifiers.org/uniprot/Q0ZA03 | denotes | d61 |
| T24 | 1107-1110 | http://identifiers.org/uniprot/B9EZ61 | denotes | d61 |
| T25 | 1235-1241 | http://identifiers.org/uniprot/Q942F3 | denotes | OsBRI1 |
| T26 | 1235-1241 | http://identifiers.org/uniprot/Q0ZA03 | denotes | OsBRI1 |
| T27 | 1235-1241 | http://identifiers.org/uniprot/B9EZ61 | denotes | OsBRI1 |
| T28 | 1235-1241 | http://identifiers.org/refseq/NP_001064047.2 | denotes | OsBRI1 |
| T29 | 1317-1320 | http://identifiers.org/uniprot/Q942F3 | denotes | d61 |
| T30 | 1317-1320 | http://identifiers.org/uniprot/Q0ZA03 | denotes | d61 |
| T31 | 1317-1320 | http://identifiers.org/uniprot/B9EZ61 | denotes | d61 |
| T32 | 1352-1358 | http://identifiers.org/uniprot/Q942F3 | denotes | OsBRI1 |
| T33 | 1352-1358 | http://identifiers.org/uniprot/Q0ZA03 | denotes | OsBRI1 |
| T34 | 1352-1358 | http://identifiers.org/uniprot/B9EZ61 | denotes | OsBRI1 |
| T35 | 1352-1358 | http://identifiers.org/refseq/NP_001064047.2 | denotes | OsBRI1 |
| M_0 | 292-294 | hunflair:NA:Gene | denotes | BR |
| M_1 | 435-437 | hunflair:NA:Gene | denotes | BR |
| M_2 | 588-590 | hunflair:NA:Gene | denotes | BR |
| M_3 | 746-748 | hunflair:NA:Gene | denotes | BR |
| M_4 | 127-143 | hunflair:NA:Chemical | denotes | Brassinosteroids |
| M_5 | 325-330 | hunflair:NA:Chemical | denotes | auxin |
| M_6 | 711-714 | hunflair:NA:Gene | denotes | BRI |
| M_7 | 942-952 | hunflair:NA:Chemical | denotes | amino acid |
| M_8 | 22-26 | hunflair:NA:Species | denotes | rice |
| M_9 | 371-375 | hunflair:NA:Species | denotes | rice |
| M_10 | 441-445 | hunflair:NA:Species | denotes | rice |
| M_11 | 538-542 | hunflair:NA:Species | denotes | rice |
| M_12 | 630-634 | hunflair:NA:Species | denotes | rice |
| M_13 | 1418-1422 | hunflair:NA:Species | denotes | rice |
| M_14 | 27-42 | hunflair:NA:Chemical | denotes | brassinosteroid |
| M_15 | 836-845 | hunflair:NA:Gene | denotes | d61 locus |
| M_16 | 1317-1328 | hunflair:NA:Gene | denotes | d61 mutants |
| M_17 | 557-560 | hunflair:NA:Gene | denotes | d61 |
| M_18 | 836-839 | hunflair:NA:Gene | denotes | d61 |
| M_19 | 911-914 | hunflair:NA:Gene | denotes | d61 |
| M_20 | 1107-1110 | hunflair:NA:Gene | denotes | d61 |
| M_21 | 1317-1320 | hunflair:NA:Gene | denotes | d61 |
| M_22 | 911-922 | hunflair:NA:Gene | denotes | d61 alleles |
| M_23 | 641-647 | hunflair:NA:Gene | denotes | OsBRI1 |
| M_24 | 799-805 | hunflair:NA:Gene | denotes | OsBRI1 |
| M_25 | 1036-1042 | hunflair:NA:Gene | denotes | OsBRI1 |
| M_26 | 1235-1241 | hunflair:NA:Gene | denotes | OsBRI1 |
| M_27 | 1352-1358 | hunflair:NA:Gene | denotes | OsBRI1 |
| M_28 | 746-764 | hunflair:NA:Gene | denotes | BR receptor kinase |
| M_29 | 699-710 | hunflair:NA:Species | denotes | Arabidopsis |
OryzaGP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 27-55 | gene | denotes | brassinosteroid insensitive1 |
| T2 | 799-805 | gene | denotes | OsBRI1 |
| T3 | 836-839 | gene | denotes | d61 |
| T4 | 911-914 | gene | denotes | d61 |
| T5 | 1036-1042 | gene | denotes | OsBRI1 |
| T6 | 1107-1110 | gene | denotes | d61 |
| T7 | 1235-1241 | gene | denotes | OsBRI1 |
| T8 | 1317-1320 | gene | denotes | d61 |
| T9 | 1352-1358 | gene | denotes | OsBRI1 |
Oryza_sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-126 | Sentence | denotes | Loss of function of a rice brassinosteroid insensitive1 homolog prevents internode elongation and bending of the lamina joint. |
| T2 | 127-236 | Sentence | denotes | Brassinosteroids (BRs) are plant growth-promoting natural products required for plant growth and development. |
| T3 | 237-376 | Sentence | denotes | Physiological studies have demonstrated that exogenous BR, alone or in combination with auxin, enhance bending of the lamina joint of rice. |
| T4 | 377-469 | Sentence | denotes | However, little is known about the function of endogenous BR in rice or other grass species. |
| T5 | 470-617 | Sentence | denotes | We report here the phenotypical and molecular characterization of a rice dwarf mutant, d61, that is less sensitive to BR compared to the wild type. |
| T6 | 618-765 | Sentence | denotes | We cloned a rice gene, OsBRI1, with extensive sequence similarity to that of the Arabidopsis BRI gene, which encodes a putative BR receptor kinase. |
| T7 | 766-846 | Sentence | denotes | Linkage analysis showed that the OsBRI1 gene is closely linked to the d61 locus. |
| T8 | 847-995 | Sentence | denotes | Single nucleotide substitutions found at different sites of the d61 alleles would give rise to amino acid changes in the corresponding polypeptides. |
| T9 | 996-1179 | Sentence | denotes | Furthermore, introduction of the entire OsBRI1 coding region, including the 5' and 3' flanking sequences, into d61 plants complemented the mutation to display the wild-type phenotype. |
| T10 | 1180-1329 | Sentence | denotes | Transgenic plants carrying the antisense strand of the OsBRI1 transcript showed similar or even more severe phenotypes than those of the d61 mutants. |
| T11 | 1330-1626 | Sentence | denotes | Our results show that OsBRI1 functions in various growth and developmental processes in rice, including (1) internode elongation, by inducing the formation of the intercalary meristem and the longitudinal elongation of internode cells; (2) bending of the lamina joint; and (3) skotomorphogenesis. |