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PubMed:10814706 JSONTXT

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Glycan-Motif

Id Subject Object Predicate Lexical cue
T1 230-236 https://glytoucan.org/Structures/Glycans/G82576YO denotes fucose

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 230-236 Glycan_Motif denotes fucose https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G82576YO

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 230-236 https://glytoucan.org/Structures/Glycans/G82576YO denotes fucose

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-94 Sentence denotes Genomic structure and promoter analysis of the human alpha1, 6-fucosyltransferase gene (FUT8).
TextSentencer_T2 95-319 Sentence denotes GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha1,6-fucosyltransferase (alpha1,6FucT) catalyzes the transfer of a fucosyl moiety from GDP-fucose to the asparagine-linked GlcNAc residue of complex N-glycans via alpha1,6-linkage.
TextSentencer_T3 320-429 Sentence denotes We have cloned the genomic DNA which encodes the human alpha1,6FucT gene ( FUT8 ) and analyzed its structure.
TextSentencer_T4 430-585 Sentence denotes It was found that the gene consists of at least nine exons spanning more than a 50 kbp genomic region, and the coding sequence is divided into eight exons.
TextSentencer_T5 586-697 Sentence denotes The translation initiation codon was located at exon 2, and thus exon 1 encodes only 5'-untranslated sequences.
TextSentencer_T6 698-923 Sentence denotes Transcription initiation site of FUT8 was determined by 5'-rapid amplification of the cDNA end and a primer-extension analysis using the total RNA isolated from SK-OV-3 cells, which have a high level of alpha1,6FucT activity.
TextSentencer_T7 924-996 Sentence denotes We then characterized the FUT8 promoter region by a reporter gene assay.
TextSentencer_T8 997-1152 Sentence denotes The luciferase reporter assay indicated that the 5'-flanking region of exon 1, which covered about 1 kbp, conferred the promoter activity in SK-OV-3 cells.
TextSentencer_T9 1153-1303 Sentence denotes This region contains potential binding sites for some transcription factors, such as bHLH, cMyb, GATA-1, as well as a TATA-box, but not a CCAAT motif.
TextSentencer_T10 1304-1562 Sentence denotes 5'-Untranslated sequences found in ESTs and the cDNA for the FUT8 suggest the presence of an additional exon(s) at the upstream of the first exon identified in this study, and therefore, the transcription of the gene would be regulated by multiple promoters.
T1 0-94 Sentence denotes Genomic structure and promoter analysis of the human alpha1, 6-fucosyltransferase gene (FUT8).
T2 95-319 Sentence denotes GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha1,6-fucosyltransferase (alpha1,6FucT) catalyzes the transfer of a fucosyl moiety from GDP-fucose to the asparagine-linked GlcNAc residue of complex N-glycans via alpha1,6-linkage.
T3 320-429 Sentence denotes We have cloned the genomic DNA which encodes the human alpha1,6FucT gene ( FUT8 ) and analyzed its structure.
T4 430-585 Sentence denotes It was found that the gene consists of at least nine exons spanning more than a 50 kbp genomic region, and the coding sequence is divided into eight exons.
T5 586-697 Sentence denotes The translation initiation codon was located at exon 2, and thus exon 1 encodes only 5'-untranslated sequences.
T6 698-923 Sentence denotes Transcription initiation site of FUT8 was determined by 5'-rapid amplification of the cDNA end and a primer-extension analysis using the total RNA isolated from SK-OV-3 cells, which have a high level of alpha1,6FucT activity.
T7 924-996 Sentence denotes We then characterized the FUT8 promoter region by a reporter gene assay.
T8 997-1152 Sentence denotes The luciferase reporter assay indicated that the 5'-flanking region of exon 1, which covered about 1 kbp, conferred the promoter activity in SK-OV-3 cells.
T9 1153-1303 Sentence denotes This region contains potential binding sites for some transcription factors, such as bHLH, cMyb, GATA-1, as well as a TATA-box, but not a CCAAT motif.
T10 1304-1562 Sentence denotes 5'-Untranslated sequences found in ESTs and the cDNA for the FUT8 suggest the presence of an additional exon(s) at the upstream of the first exon identified in this study, and therefore, the transcription of the gene would be regulated by multiple promoters.
T1 0-94 Sentence denotes Genomic structure and promoter analysis of the human alpha1, 6-fucosyltransferase gene (FUT8).
T2 95-319 Sentence denotes GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha1,6-fucosyltransferase (alpha1,6FucT) catalyzes the transfer of a fucosyl moiety from GDP-fucose to the asparagine-linked GlcNAc residue of complex N-glycans via alpha1,6-linkage.
T3 320-429 Sentence denotes We have cloned the genomic DNA which encodes the human alpha1,6FucT gene ( FUT8 ) and analyzed its structure.
T4 430-585 Sentence denotes It was found that the gene consists of at least nine exons spanning more than a 50 kbp genomic region, and the coding sequence is divided into eight exons.
T5 586-697 Sentence denotes The translation initiation codon was located at exon 2, and thus exon 1 encodes only 5'-untranslated sequences.
T6 698-923 Sentence denotes Transcription initiation site of FUT8 was determined by 5'-rapid amplification of the cDNA end and a primer-extension analysis using the total RNA isolated from SK-OV-3 cells, which have a high level of alpha1,6FucT activity.
T7 924-996 Sentence denotes We then characterized the FUT8 promoter region by a reporter gene assay.
T8 997-1152 Sentence denotes The luciferase reporter assay indicated that the 5'-flanking region of exon 1, which covered about 1 kbp, conferred the promoter activity in SK-OV-3 cells.
T9 1153-1303 Sentence denotes This region contains potential binding sites for some transcription factors, such as bHLH, cMyb, GATA-1, as well as a TATA-box, but not a CCAAT motif.
T10 1304-1562 Sentence denotes 5'-Untranslated sequences found in ESTs and the cDNA for the FUT8 suggest the presence of an additional exon(s) at the upstream of the first exon identified in this study, and therefore, the transcription of the gene would be regulated by multiple promoters.

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 0-7 FMAID:198062 denotes Genomic
_T2 0-7 FMAID:84116 denotes Genomic
_T3 82-86 FMAID:198663 denotes gene
_T4 121-134 FMAID:196792 denotes glucosaminide
_T5 121-134 FMAID:82797 denotes glucosaminide
_T6 230-236 FMAID:196784 denotes fucose
_T7 230-236 FMAID:82790 denotes fucose
_T8 244-254 FMAID:196739 denotes asparagine
_T9 244-254 FMAID:82750 denotes asparagine
_T10 339-346 FMAID:84116 denotes genomic
_T11 339-346 FMAID:198062 denotes genomic
_T12 388-392 FMAID:198663 denotes gene
_T13 452-456 FMAID:198663 denotes gene
_T14 483-488 FMAID:84120 denotes exons
_T15 483-488 FMAID:198073 denotes exons
_T16 517-524 FMAID:84116 denotes genomic
_T17 517-524 FMAID:198062 denotes genomic
_T18 541-556 FMAID:198074 denotes coding sequence
_T19 579-584 FMAID:198073 denotes exons
_T20 579-584 FMAID:84120 denotes exons
_T21 634-638 FMAID:84120 denotes exon
_T22 634-638 FMAID:198073 denotes exon
_T23 651-655 FMAID:84120 denotes exon
_T24 651-655 FMAID:198073 denotes exon
_T25 867-872 FMAID:68646 denotes cells
_T26 867-872 FMAID:169002 denotes cells
_T27 985-989 FMAID:198663 denotes gene
_T28 1049-1057 FMAID:104341 denotes flanking
_T29 1068-1072 FMAID:84120 denotes exon
_T30 1068-1072 FMAID:198073 denotes exon
_T31 1146-1151 FMAID:68646 denotes cells
_T32 1146-1151 FMAID:169002 denotes cells
_T33 1408-1412 FMAID:84120 denotes exon
_T34 1408-1412 FMAID:198073 denotes exon
_T35 1445-1449 FMAID:198073 denotes exon
_T36 1445-1449 FMAID:84120 denotes exon
_T37 1516-1520 FMAID:198663 denotes gene

uniprot-human

Id Subject Object Predicate Lexical cue
T1 61-81 http://www.uniprot.org/uniprot/P51993 denotes 6-fucosyltransferase
T2 88-92 http://www.uniprot.org/uniprot/Q9BYC5 denotes FUT8
T3 395-399 http://www.uniprot.org/uniprot/Q9BYC5 denotes FUT8
T4 731-735 http://www.uniprot.org/uniprot/Q9BYC5 denotes FUT8
T5 950-954 http://www.uniprot.org/uniprot/Q9BYC5 denotes FUT8
T6 1365-1369 http://www.uniprot.org/uniprot/Q9BYC5 denotes FUT8
T7 859-861 http://www.uniprot.org/uniprot/O94907 denotes SK
T8 1138-1140 http://www.uniprot.org/uniprot/O94907 denotes SK
T9 859-861 http://www.uniprot.org/uniprot/Q92952 denotes SK
T10 1138-1140 http://www.uniprot.org/uniprot/Q92952 denotes SK
T11 1207-1242 http://www.uniprot.org/uniprot/Q7RTS3 denotes transcription factors, such as bHLH
T12 1250-1256 http://www.uniprot.org/uniprot/P15976 denotes GATA-1

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 513-516 http://www.uniprot.org/uniprot/Q6ZPU9 denotes kbp
T2 1098-1101 http://www.uniprot.org/uniprot/Q6ZPU9 denotes kbp
T3 1250-1256 http://www.uniprot.org/uniprot/P17679 denotes GATA-1

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 114-118 http://purl.bioontology.org/ontology/NCBITAXON/3554 denotes beta
T2 114-118 http://purl.bioontology.org/ontology/NCBITAXON/158455 denotes beta
T3 613-618 http://purl.bioontology.org/ontology/NCBITAXON/79338 denotes codon
T4 613-618 http://purl.bioontology.org/ontology/NCBITAXON/722432 denotes codon
T5 867-872 http://purl.bioontology.org/ontology/STY/T025 denotes cells
T6 1146-1151 http://purl.bioontology.org/ontology/STY/T025 denotes cells

GO-BP

Id Subject Object Predicate Lexical cue
T1 206-213 http://purl.obolibrary.org/obo/GO_0036065 denotes fucosyl
T2 590-601 http://purl.obolibrary.org/obo/GO_0006412 denotes translation
T3 590-612 http://purl.obolibrary.org/obo/GO_0006413 denotes translation initiation
T4 698-711 http://purl.obolibrary.org/obo/GO_0006351 denotes Transcription
T5 1207-1220 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T6 1495-1508 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T7 1530-1539 http://purl.obolibrary.org/obo/GO_0065007 denotes regulated

GO-MF

Id Subject Object Predicate Lexical cue
T1 1184-1191 http://purl.obolibrary.org/obo/GO_0070026 denotes binding
T2 1184-1191 http://purl.obolibrary.org/obo/GO_0003680 denotes binding
T3 1184-1191 http://purl.obolibrary.org/obo/GO_0017091 denotes binding
T4 1184-1191 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T1 867-872 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T2 1146-1151 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 806-815 http://purl.obolibrary.org/obo/UBERON_2000106 denotes extension

EDAM-topics

Id Subject Object Predicate Lexical cue
T1 0-7 http://edamontology.org/topic_0622 denotes Genomic
T2 8-39 http://edamontology.org/topic_0081 denotes structure and promoter analysis
T3 22-30 http://edamontology.org/topic_1312 denotes promoter
T4 22-30 http://edamontology.org/topic_0749 denotes promoter
T5 22-30 http://edamontology.org/topic_0111 denotes promoter
T6 47-52 http://edamontology.org/topic_2815 denotes human
T7 311-318 http://edamontology.org/topic_0102 denotes linkage
T8 339-346 http://edamontology.org/topic_0622 denotes genomic
T9 369-374 http://edamontology.org/topic_2815 denotes human
T10 483-488 http://edamontology.org/topic_3512 denotes exons
T11 483-488 http://edamontology.org/topic_2397 denotes exons
T12 517-524 http://edamontology.org/topic_0622 denotes genomic
T13 548-556 http://edamontology.org/topic_3168 denotes sequence
T14 548-556 http://edamontology.org/topic_0080 denotes sequence
T15 579-584 http://edamontology.org/topic_3512 denotes exons
T16 579-584 http://edamontology.org/topic_2397 denotes exons
T17 590-601 http://edamontology.org/topic_0108 denotes translation
T18 634-638 http://edamontology.org/topic_3512 denotes exon
T19 634-638 http://edamontology.org/topic_2397 denotes exon
T20 651-655 http://edamontology.org/topic_2397 denotes exon
T21 651-655 http://edamontology.org/topic_3512 denotes exon
T22 687-696 http://edamontology.org/topic_0080 denotes sequences
T23 687-696 http://edamontology.org/topic_3168 denotes sequences
T24 698-711 http://edamontology.org/topic_0203 denotes Transcription
T25 698-711 http://edamontology.org/topic_0110 denotes Transcription
T26 698-711 http://edamontology.org/topic_3308 denotes Transcription
T27 698-711 http://edamontology.org/topic_3512 denotes Transcription
T28 784-788 http://edamontology.org/topic_3512 denotes cDNA
T29 799-805 http://edamontology.org/topic_0922 denotes primer
T30 799-805 http://edamontology.org/topic_0632 denotes primer
T31 955-963 http://edamontology.org/topic_0111 denotes promoter
T32 955-963 http://edamontology.org/topic_0749 denotes promoter
T33 955-963 http://edamontology.org/topic_1312 denotes promoter
T34 1068-1072 http://edamontology.org/topic_3512 denotes exon
T35 1068-1072 http://edamontology.org/topic_2397 denotes exon
T36 1117-1125 http://edamontology.org/topic_0749 denotes promoter
T37 1117-1125 http://edamontology.org/topic_1312 denotes promoter
T38 1117-1125 http://edamontology.org/topic_0111 denotes promoter
T39 1207-1220 http://edamontology.org/topic_3308 denotes transcription
T40 1207-1220 http://edamontology.org/topic_0203 denotes transcription
T41 1207-1220 http://edamontology.org/topic_3512 denotes transcription
T42 1207-1220 http://edamontology.org/topic_0110 denotes transcription
T43 1207-1228 http://edamontology.org/topic_0749 denotes transcription factors
T44 1297-1302 http://edamontology.org/topic_0158 denotes motif
T45 1320-1329 http://edamontology.org/topic_0080 denotes sequences
T46 1320-1329 http://edamontology.org/topic_3168 denotes sequences
T47 1339-1343 http://edamontology.org/topic_3512 denotes ESTs
T48 1352-1356 http://edamontology.org/topic_3512 denotes cDNA
T49 1408-1412 http://edamontology.org/topic_2397 denotes exon
T50 1408-1412 http://edamontology.org/topic_3512 denotes exon
T51 1445-1449 http://edamontology.org/topic_3512 denotes exon
T52 1445-1449 http://edamontology.org/topic_2397 denotes exon
T53 1469-1474 http://edamontology.org/topic_3678 denotes study
T54 1495-1508 http://edamontology.org/topic_0203 denotes transcription
T55 1495-1508 http://edamontology.org/topic_3512 denotes transcription
T56 1495-1508 http://edamontology.org/topic_3308 denotes transcription
T57 1495-1508 http://edamontology.org/topic_0110 denotes transcription
T58 1552-1561 http://edamontology.org/topic_0749 denotes promoters
T59 1552-1561 http://edamontology.org/topic_0111 denotes promoters
T60 1552-1561 http://edamontology.org/topic_1312 denotes promoters

EDAM-DFO

Id Subject Object Predicate Lexical cue
T1 8-17 http://edamontology.org/data_0883 denotes structure
T2 8-39 http://edamontology.org/operation_2480 denotes structure and promoter analysis
T3 31-39 http://edamontology.org/operation_2945 denotes analysis
T4 269-276 http://edamontology.org/data_1756 denotes residue
T5 419-428 http://edamontology.org/data_0883 denotes structure
T6 548-556 http://edamontology.org/data_2044 denotes sequence
T7 548-556 http://edamontology.org/operation_3218 denotes sequence
T8 687-696 http://edamontology.org/operation_3218 denotes sequences
T9 687-696 http://edamontology.org/data_2044 denotes sequences
T10 816-824 http://edamontology.org/operation_2945 denotes analysis
T11 976-984 http://edamontology.org/data_2048 denotes reporter
T12 1012-1020 http://edamontology.org/data_2048 denotes reporter
T13 1207-1228 http://edamontology.org/data_2755 denotes transcription factors
T14 1207-1228 http://edamontology.org/data_2911 denotes transcription factors
T15 1320-1329 http://edamontology.org/data_2044 denotes sequences
T16 1320-1329 http://edamontology.org/operation_3218 denotes sequences
T17 1450-1460 http://edamontology.org/data_2611 denotes identified
T18 1450-1460 http://edamontology.org/data_0842 denotes identified

NGLY1-deficiency

Id Subject Object Predicate Lexical cue
PD-NGLY1-deficiency-B_T1 262-268 chem:24139 denotes GlcNAc

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 806-815 http://purl.obolibrary.org/obo/UBERON_2000106 denotes extension

GlycoBiology-Motifs

Id Subject Object Predicate Lexical cue
T1 288-297 http://rdf.glycoinfo.org/glycan/G00027MO denotes N-glycans

GlyTouCan-IUPAC

Id Subject Object Predicate Lexical cue
GlycanIUPAC_T1 262-268 "http://rdf.glycoinfo.org/glycan/G26693XF" denotes GlcNAc
GlycanIUPAC_T2 262-268 "http://rdf.glycoinfo.org/glycan/G01864SU" denotes GlcNAc
GlycanIUPAC_T3 262-268 "http://rdf.glycoinfo.org/glycan/G17605FD" denotes GlcNAc
GlycanIUPAC_T4 262-268 "http://rdf.glycoinfo.org/glycan/G41950LU" denotes GlcNAc
GlycanIUPAC_T5 262-268 "http://rdf.glycoinfo.org/glycan/G57195RJ" denotes GlcNAc
GlycanIUPAC_T6 262-268 "http://rdf.glycoinfo.org/glycan/G85391SA" denotes GlcNAc
GlycanIUPAC_T7 262-268 "http://rdf.glycoinfo.org/glycan/G89565QL" denotes GlcNAc
GlycanIUPAC_T8 262-268 "http://rdf.glycoinfo.org/glycan/G80869MR" denotes GlcNAc
GlycanIUPAC_T9 262-268 "http://rdf.glycoinfo.org/glycan/G55978NL" denotes GlcNAc
GlycanIUPAC_T10 262-268 "http://rdf.glycoinfo.org/glycan/G54644LT" denotes GlcNAc
GlycanIUPAC_T11 262-268 "http://rdf.glycoinfo.org/glycan/G25694UG" denotes GlcNAc
GlycanIUPAC_T12 262-268 "http://rdf.glycoinfo.org/glycan/G25126RB" denotes GlcNAc
GlycanIUPAC_T13 262-268 "http://rdf.glycoinfo.org/glycan/G51848AD" denotes GlcNAc
GlycanIUPAC_T14 262-268 "http://rdf.glycoinfo.org/glycan/G94667GM" denotes GlcNAc
GlycanIUPAC_T15 262-268 "http://rdf.glycoinfo.org/glycan/G30124BO" denotes GlcNAc
GlycanIUPAC_T16 262-268 "http://rdf.glycoinfo.org/glycan/G82777EZ" denotes GlcNAc
GlycanIUPAC_T17 262-268 "http://rdf.glycoinfo.org/glycan/G10151YZ" denotes GlcNAc
GlycanIUPAC_T18 262-268 "http://rdf.glycoinfo.org/glycan/G17585ZM" denotes GlcNAc
GlycanIUPAC_T19 262-268 "http://rdf.glycoinfo.org/glycan/G04411CJ" denotes GlcNAc
GlycanIUPAC_T20 262-268 "http://rdf.glycoinfo.org/glycan/G38254HJ" denotes GlcNAc
GlycanIUPAC_T21 262-268 "http://rdf.glycoinfo.org/glycan/G75188FS" denotes GlcNAc
GlycanIUPAC_T22 262-268 "http://rdf.glycoinfo.org/glycan/G70374VG" denotes GlcNAc
GlycanIUPAC_T23 262-268 "http://rdf.glycoinfo.org/glycan/G45176LJ" denotes GlcNAc
GlycanIUPAC_T24 262-268 "http://rdf.glycoinfo.org/glycan/G30874VW" denotes GlcNAc
GlycanIUPAC_T25 262-268 "http://rdf.glycoinfo.org/glycan/G69333MI" denotes GlcNAc
GlycanIUPAC_T26 262-268 "http://rdf.glycoinfo.org/glycan/G10676XO" denotes GlcNAc
GlycanIUPAC_T27 262-268 "http://rdf.glycoinfo.org/glycan/G14843DJ" denotes GlcNAc
GlycanIUPAC_T28 262-268 "http://rdf.glycoinfo.org/glycan/G47546FR" denotes GlcNAc
GlycanIUPAC_T29 262-268 "http://rdf.glycoinfo.org/glycan/G73695ZM" denotes GlcNAc
GlycanIUPAC_T30 262-268 "http://rdf.glycoinfo.org/glycan/G31923TJ" denotes GlcNAc
GlycanIUPAC_T31 262-268 "http://rdf.glycoinfo.org/glycan/G60519EP" denotes GlcNAc
GlycanIUPAC_T32 262-268 "http://rdf.glycoinfo.org/glycan/G07933IA" denotes GlcNAc
GlycanIUPAC_T33 262-268 "http://rdf.glycoinfo.org/glycan/G40745NH" denotes GlcNAc
GlycanIUPAC_T34 262-268 "http://rdf.glycoinfo.org/glycan/G54496YV" denotes GlcNAc
GlycanIUPAC_T35 262-268 "http://rdf.glycoinfo.org/glycan/G62953SQ" denotes GlcNAc
GlycanIUPAC_T36 262-268 "http://rdf.glycoinfo.org/glycan/G70070AY" denotes GlcNAc
GlycanIUPAC_T37 262-268 "http://rdf.glycoinfo.org/glycan/G78792WC" denotes GlcNAc
GlycanIUPAC_T38 262-268 "http://rdf.glycoinfo.org/glycan/G25238AV" denotes GlcNAc
GlycanIUPAC_T39 262-268 "http://rdf.glycoinfo.org/glycan/G40510DP" denotes GlcNAc
GlycanIUPAC_T40 262-268 "http://rdf.glycoinfo.org/glycan/G61120TK" denotes GlcNAc
GlycanIUPAC_T41 262-268 "http://rdf.glycoinfo.org/glycan/G41342KV" denotes GlcNAc
GlycanIUPAC_T42 262-268 "http://rdf.glycoinfo.org/glycan/G90703NA" denotes GlcNAc
GlycanIUPAC_T43 262-268 "http://rdf.glycoinfo.org/glycan/G01591HR" denotes GlcNAc
GlycanIUPAC_T44 262-268 "http://rdf.glycoinfo.org/glycan/G56520XN" denotes GlcNAc
GlycanIUPAC_T45 262-268 "http://rdf.glycoinfo.org/glycan/G81830JX" denotes GlcNAc

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 47-52 OrganismTaxon denotes human 9606
T2 369-374 OrganismTaxon denotes human 9606

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 806-815 Body_part denotes extension http://purl.obolibrary.org/obo/UBERON_2000106