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PubMed:10722741 JSONTXT

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sentences

Id Subject Object Predicate Lexical cue
T1 0-169 Sentence denotes Type XIII collagen forms homotrimers with three triple helical collagenous domains and its association into disulfide-bonded trimers is enhanced by prolyl 4-hydroxylase.
T2 170-371 Sentence denotes Type XIII collagen is a type II transmembrane protein predicted to consist of a short cytosolic domain, a single transmembrane domain, and three collagenous domains flanked by noncollagenous sequences.
T3 372-606 Sentence denotes Previous studies on mRNAs indicate that the structures of the collagenous domain closest to the cell membrane, COL1, the adjacent noncollagenous domain, NC2, and the C-terminal domains COL3 and NC4 are subject to alternative splicing.
T4 607-750 Sentence denotes In order to extend studies of type XIII collagen from cDNAs to the protein level we have produced it in insect cells by means of baculoviruses.
T5 751-915 Sentence denotes Type XIII collagen alpha chains were found to associate into disulfide-bonded trimers, and hydroxylation of proline residues dramatically enhanced this association.
T6 916-1161 Sentence denotes This protein contains altogether eight cysteine residues, and interchain disulfide bonds could be located in the NC1 domain and possibly at the junction of COL1 and NC2, while the two cysteine residues in NC4 are likely to form intrachain bonds.
T7 1162-1340 Sentence denotes Pepsin and trypsin/chymotrypsin digestions indicated that the type XIII collagen alpha chains form homotrimers whose three collagenous domains are in triple helical conformation.
T8 1341-1451 Sentence denotes The thermal stabilities (T(m)) of the COL1, COL2, and COL3 domains were 38, 49 and 40 degrees C, respectively.
T9 1452-1707 Sentence denotes The T(m) of the central collagenous domain is unusually high, which in the light of this domain being invariant in terms of alternative splicing suggests that the central portion of the molecule may have an important role in the stability of the molecule.
T10 1708-1955 Sentence denotes All in all, most of the type XIII collagen ectodomain appears to be present in triple helical conformation, which is in clear contrast to the short or highly interrupted triple helical domains of the other known collagenous transmembrane proteins.

bionlp-st-epi-2011-training

Id Subject Object Predicate Lexical cue
T1 0-18 Protein denotes Type XIII collagen
T2 170-188 Protein denotes Type XIII collagen
T3 637-655 Protein denotes type XIII collagen
T4 751-782 Protein denotes Type XIII collagen alpha chains
T5 1162-1168 Protein denotes Pepsin
T6 1224-1255 Protein denotes type XIII collagen alpha chains
T7 1732-1750 Protein denotes type XIII collagen

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 202-215 Body_part denotes transmembrane http://purl.obolibrary.org/obo/GO_0016020
T2 283-296 Body_part denotes transmembrane http://purl.obolibrary.org/obo/GO_0016020
T3 468-481 Body_part denotes cell membrane http://purl.obolibrary.org/obo/GO_0005886
T4 1060-1068 Body_part denotes junction http://purl.obolibrary.org/obo/UBERON_0007651
T5 1932-1945 Body_part denotes transmembrane http://purl.obolibrary.org/obo/GO_0016020