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PubMed:10712549 JSONTXT

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Oryza-OGER

Id Subject Object Predicate Lexical cue
T1 41-45 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T2 41-45 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T3 41-45 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T4 102-106 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T5 102-106 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T6 102-106 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T7 108-113 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza
T8 108-120 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes Oryza sativa
T9 108-120 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza sativa
T10 153-163 http://purl.obolibrary.org/obo/CHEBI_18233 denotes xyloglucan
T11 153-163 http://id.nlm.nih.gov/mesh/C029353 denotes xyloglucan
T12 153-163 http://id.nlm.nih.gov/mesh/C029353 denotes xyloglucan
T13 153-184 http://id.nlm.nih.gov/mesh/C073693 denotes xyloglucan endotransglycosylase
T14 194-198 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T15 194-198 http://purl.obolibrary.org/obo/CL_0000000 denotes cell
T16 194-203 http://purl.obolibrary.org/obo/GO_0005618 denotes cell wall
T17 199-203 http://purl.obolibrary.org/obo/UBERON_0000060 denotes wall
T18 231-234 http://purl.obolibrary.org/obo/PR_Q9NZC7 denotes for
T19 231-234 http://purl.obolibrary.org/obo/PR_000001036 denotes for
T20 235-239 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T21 235-239 http://purl.obolibrary.org/obo/CL_0000000 denotes cell
T22 235-250 http://purl.obolibrary.org/obo/GO_0009826 denotes cell elongation
T23 257-261 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T24 257-261 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T25 257-261 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T26 275-278 http://www.uniprot.org/uniprot/P18117 denotes XTR
T27 287-293 XTH2 denotes OsXTR1
T28 295-301 XTH11 denotes OsXTR2
T29 300-301 AMT1;3 denotes 2
T30 303-309 XTH23 denotes OsXTR3
T31 308-309 AMT1;2 denotes 3
T32 311-314 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T33 311-314 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T34 315-321 XTH3 denotes OsXTR4
T35 337-340 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T36 337-340 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T37 370-374 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T38 370-374 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T39 370-374 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T40 375-381 http://id.nlm.nih.gov/mesh/D010944 denotes plants
T41 421-424 http://www.uniprot.org/uniprot/P18117 denotes XTR
T42 460-465 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T43 460-465 http://purl.obolibrary.org/obo/UBERON_0000062 denotes organ
T44 478-481 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T45 478-481 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T46 503-508 http://id.nlm.nih.gov/mesh/D010944 denotes plant
T47 503-517 http://id.nlm.nih.gov/mesh/D010937 denotes plant hormones
T48 503-517 http://purl.obolibrary.org/obo/CHEBI_37848 denotes plant hormones
T49 509-517 http://id.nlm.nih.gov/mesh/D006728 denotes hormones
T50 509-517 http://purl.obolibrary.org/obo/CHEBI_24621 denotes hormones
T51 509-517 http://id.nlm.nih.gov/mesh/D006728 denotes hormones
T52 519-525 XTH2 denotes OsXTR1
T53 526-529 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T54 526-529 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T55 530-536 XTH23 denotes OsXTR3
T56 535-536 AMT1;2 denotes 3
T57 545-554 http://purl.obolibrary.org/obo/SO_0000119 denotes regulated
T58 558-569 http://purl.obolibrary.org/obo/CHEBI_28833 denotes gibberellin
T59 558-569 http://purl.obolibrary.org/obo/CHEBI_24250 denotes gibberellin
T60 570-573 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T61 570-573 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T62 574-590 http://id.nlm.nih.gov/mesh/D060406 denotes brassinosteroids
T63 574-590 http://purl.obolibrary.org/obo/CHEBI_22921 denotes brassinosteroids
T64 574-590 http://id.nlm.nih.gov/mesh/D060406 denotes brassinosteroids
T65 600-606 XTH11 denotes OsXTR2
T66 605-606 AMT1;3 denotes 2
T67 607-610 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T68 607-610 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T69 611-617 XTH3 denotes OsXTR4
T70 652-660 http://id.nlm.nih.gov/mesh/D006728 denotes hormones
T71 652-660 http://purl.obolibrary.org/obo/CHEBI_24621 denotes hormones
T72 652-660 http://id.nlm.nih.gov/mesh/D006728 denotes hormones
T73 685-688 http://www.uniprot.org/uniprot/P18117 denotes XTR
T74 695-698 http://purl.obolibrary.org/obo/PR_000017371 denotes was
T75 695-698 http://purl.obolibrary.org/obo/PR_P42768 denotes was
T76 695-698 http://purl.obolibrary.org/obo/PR_P70315 denotes was
T77 695-698 http://id.nlm.nih.gov/mesh/D014923 denotes was
T78 777-783 XTH2 denotes OsXTR1
T79 784-787 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T80 784-787 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T81 788-794 XTH23 denotes OsXTR3
T82 793-794 AMT1;2 denotes 3
T83 869-875 XTH11 denotes OsXTR2
T84 874-875 AMT1;3 denotes 2
T85 876-879 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T86 876-879 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T87 880-886 XTH3 denotes OsXTR4
T88 911-914 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T89 911-914 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T90 933-936 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T91 933-936 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T92 1035-1041 XTH2 denotes OsXTR1
T93 1042-1045 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T94 1042-1045 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T95 1046-1052 XTH23 denotes OsXTR3
T96 1051-1052 AMT1;2 denotes 3
T97 1124-1127 http://purl.obolibrary.org/obo/PR_000017371 denotes was
T98 1124-1127 http://purl.obolibrary.org/obo/PR_P42768 denotes was
T99 1124-1127 http://purl.obolibrary.org/obo/PR_P70315 denotes was
T100 1124-1127 http://id.nlm.nih.gov/mesh/D014923 denotes was
T101 1137-1140 http://purl.obolibrary.org/obo/PR_Q9NZC7 denotes for
T102 1137-1140 http://purl.obolibrary.org/obo/PR_000001036 denotes for
T103 1141-1147 XTH11 denotes OsXTR2
T104 1146-1147 AMT1;3 denotes 2
T105 1148-1151 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T106 1148-1151 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T107 1152-1158 XTH3 denotes OsXTR4
T108 1215-1221 XTH2 denotes OsXTR1
T109 1222-1225 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T110 1222-1225 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T111 1226-1232 XTH23 denotes OsXTR3
T112 1231-1232 AMT1;2 denotes 3
T113 1233-1236 http://web.expasy.org/cellosaurus/CVCL_E773 denotes may
T114 1270-1274 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T115 1270-1274 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T116 1270-1274 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice

pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 438-456 cand:PO:0007056-pattern formation stage denotes different patterns
M_1 438-456 cand:PPO:0002323-reproductive structures present denotes different patterns
M_2 438-456 cand:PO:0007525-establishment of tissue systems stage denotes different patterns
M_3 438-456 cand:TO:0000754-cardinal organ part morphology trait denotes different patterns
M_4 438-456 cand:TO:0000736-plant organ morphology trait denotes different patterns
M_5 438-456 cand:TO:0000738-plant axis morphology trait denotes different patterns
M_6 438-456 cand:TO:0000670-floret number denotes different patterns
M_7 438-456 cand:funRiceGene:85-seed shattering denotes different patterns
M_8 438-456 cand:TO:0001073-fruit shattering denotes different patterns
M_9 438-456 cand:TO:0000904-seed coat pattern denotes different patterns
M_10 438-456 cand:PO:0020149-quiescent center denotes different patterns
M_11 421-424 GeneID:NA denotes XTR
T61601 832-847 xzyao:23709 denotes elongating zone
T6290 235-250 funRiceGene:473, xzyao:13869 denotes cell elongation
T25766 108-120 xzyao:1553 denotes Oryza sativa
T8169 370-381 xzyao:23828 denotes rice plants
T68083 558-569 funRiceGene:345 denotes gibberellin
T1868 194-203 funRiceGene:126, xzyao:40746 denotes cell wall
T94534 558-569 funRiceGene:391 denotes gibberellin
T53010 347-366 xzyao:38569 denotes expression patterns
T73224 755-775 xzyao:32061 denotes developmental stages
T41214 503-517 xzyao:33520 denotes plant hormones
T89344 194-220 xzyao:22360 denotes cell wall-loosening enzyme
T59261 438-456 xzyao:11229 denotes different patterns
M_12 1073-1079 funRiceGene:501 denotes height
M_13 315-321 hunflair:NA:Gene denotes OsXTR4
M_14 611-617 hunflair:NA:Gene denotes OsXTR4
M_15 880-886 hunflair:NA:Gene denotes OsXTR4
M_16 1152-1158 hunflair:NA:Gene denotes OsXTR4
M_17 153-184 hunflair:NA:Gene denotes xyloglucan endotransglycosylase
M_18 574-590 hunflair:NA:Chemical denotes brassinosteroids
M_19 275-278 hunflair:NA:Gene denotes XTR
M_20 421-424 hunflair:NA:Gene denotes XTR
M_21 685-688 hunflair:NA:Gene denotes XTR
M_22 20-23 hunflair:NA:Gene denotes XET
M_23 186-189 hunflair:NA:Gene denotes XET
M_24 262-265 hunflair:NA:Gene denotes XET
M_25 287-293 hunflair:NA:Gene denotes OsXTR1
M_26 519-525 hunflair:NA:Gene denotes OsXTR1
M_27 777-783 hunflair:NA:Gene denotes OsXTR1
M_28 1035-1041 hunflair:NA:Gene denotes OsXTR1
M_29 1215-1221 hunflair:NA:Gene denotes OsXTR1
M_30 303-309 hunflair:NA:Gene denotes OsXTR3
M_31 530-536 hunflair:NA:Gene denotes OsXTR3
M_32 788-794 hunflair:NA:Gene denotes OsXTR3
M_33 1046-1052 hunflair:NA:Gene denotes OsXTR3
M_34 1226-1232 hunflair:NA:Gene denotes OsXTR3
M_35 108-120 hunflair:NA:Species denotes Oryza sativa
M_36 295-301 hunflair:NA:Gene denotes OsXTR2
M_37 600-606 hunflair:NA:Gene denotes OsXTR2
M_38 869-875 hunflair:NA:Gene denotes OsXTR2
M_39 1141-1147 hunflair:NA:Gene denotes OsXTR2
M_40 558-569 hunflair:NA:Gene denotes gibberellin
M_41 41-45 hunflair:NA:Species denotes rice
M_42 102-106 hunflair:NA:Species denotes rice
M_43 257-261 hunflair:NA:Species denotes rice
M_44 370-374 hunflair:NA:Species denotes rice
M_45 1270-1274 hunflair:NA:Species denotes rice
M_46 558-569 hunflair:NA:Chemical denotes gibberellin
M_47 574-590 pubtator:MESH:D060406:Chemical denotes brassinosteroids
M_48 558-569 pubtator:MESH:D005875:Chemical denotes gibberellin
M_49 41-45 pubtator:4530:Species denotes rice
M_50 102-106 pubtator:4530:Species denotes rice
M_51 257-261 pubtator:4530:Species denotes rice
M_52 370-374 pubtator:4530:Species denotes rice
M_53 1270-1274 pubtator:4530:Species denotes rice
M_54 108-122 pubtator:4530:Species denotes Oryza sativa L

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_24 558-569 hunflair:NA:Gene denotes gibberellin
M_25 303-309 hunflair:NA:Gene denotes OsXTR3
M_26 530-536 hunflair:NA:Gene denotes OsXTR3
M_27 788-794 hunflair:NA:Gene denotes OsXTR3
M_28 1046-1052 hunflair:NA:Gene denotes OsXTR3
M_29 1226-1232 hunflair:NA:Gene denotes OsXTR3
M_30 153-184 hunflair:NA:Gene denotes xyloglucan endotransglycosylase
M_31 315-321 hunflair:NA:Gene denotes OsXTR4
M_32 611-617 hunflair:NA:Gene denotes OsXTR4
M_33 880-886 hunflair:NA:Gene denotes OsXTR4
M_34 1152-1158 hunflair:NA:Gene denotes OsXTR4
M_35 20-23 hunflair:NA:Gene denotes XET
M_36 186-189 hunflair:NA:Gene denotes XET
M_37 262-265 hunflair:NA:Gene denotes XET
M_0 1073-1079 funRiceGene:501 denotes height
M_1 558-569 funRiceGene:391 denotes gibberellin
M_2 558-569 funRiceGene:345 denotes gibberellin
M_3 720-741 xzyao:16731 denotes elongating internodes
M_4 287-293 hunflair:NA:Gene denotes OsXTR1
M_5 519-525 hunflair:NA:Gene denotes OsXTR1
M_6 777-783 hunflair:NA:Gene denotes OsXTR1
M_7 1035-1041 hunflair:NA:Gene denotes OsXTR1
M_8 1215-1221 hunflair:NA:Gene denotes OsXTR1
M_9 295-301 hunflair:NA:Gene denotes OsXTR2
M_10 600-606 hunflair:NA:Gene denotes OsXTR2
M_11 869-875 hunflair:NA:Gene denotes OsXTR2
M_12 1141-1147 hunflair:NA:Gene denotes OsXTR2
M_13 108-120 hunflair:NA:Species denotes Oryza sativa
M_14 275-278 hunflair:NA:Gene denotes XTR
M_15 421-424 hunflair:NA:Gene denotes XTR
M_16 685-688 hunflair:NA:Gene denotes XTR
M_17 558-569 hunflair:NA:Chemical denotes gibberellin
M_18 574-590 hunflair:NA:Chemical denotes brassinosteroids
M_19 41-45 hunflair:NA:Species denotes rice
M_20 102-106 hunflair:NA:Species denotes rice
M_21 257-261 hunflair:NA:Species denotes rice
M_22 370-374 hunflair:NA:Species denotes rice
M_23 1270-1274 hunflair:NA:Species denotes rice
M_38 574-590 pubtator:MESH:D060406:Chemical denotes brassinosteroids
M_39 558-569 pubtator:MESH:D005875:Chemical denotes gibberellin
M_40 41-45 pubtator:4530:Species denotes rice
M_41 102-106 pubtator:4530:Species denotes rice
M_42 257-261 pubtator:4530:Species denotes rice
M_43 370-374 pubtator:4530:Species denotes rice
M_44 1270-1274 pubtator:4530:Species denotes rice
M_45 108-122 pubtator:4530:Species denotes Oryza sativa L

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 287-293 http://identifiers.org/oryzabase.gene/6500 denotes OsXTR1
T2 295-301 http://identifiers.org/oryzabase.gene/6491 denotes OsXTR2
T3 303-309 http://identifiers.org/oryzabase.gene/6504 denotes OsXTR3
T4 315-321 http://identifiers.org/oryzabase.gene/6511 denotes OsXTR4
T5 519-525 http://identifiers.org/oryzabase.gene/6500 denotes OsXTR1
T6 530-536 http://identifiers.org/oryzabase.gene/6504 denotes OsXTR3
T7 600-606 http://identifiers.org/oryzabase.gene/6491 denotes OsXTR2
T8 611-617 http://identifiers.org/oryzabase.gene/6511 denotes OsXTR4
T9 777-783 http://identifiers.org/oryzabase.gene/6500 denotes OsXTR1
T10 788-794 http://identifiers.org/oryzabase.gene/6504 denotes OsXTR3
T11 869-875 http://identifiers.org/oryzabase.gene/6491 denotes OsXTR2
T12 880-886 http://identifiers.org/oryzabase.gene/6511 denotes OsXTR4
T13 1035-1041 http://identifiers.org/oryzabase.gene/6500 denotes OsXTR1
T14 1046-1052 http://identifiers.org/oryzabase.gene/6504 denotes OsXTR3
T15 1141-1147 http://identifiers.org/oryzabase.gene/6491 denotes OsXTR2
T16 1152-1158 http://identifiers.org/oryzabase.gene/6511 denotes OsXTR4
T17 1215-1221 http://identifiers.org/oryzabase.gene/6500 denotes OsXTR1
T18 1226-1232 http://identifiers.org/oryzabase.gene/6504 denotes OsXTR3
T72746 287-293 http://identifiers.org/rapdb.locus/Os11g0539200 denotes OsXTR1
T76575 295-301 http://identifiers.org/rapdb.locus/Os06g0696400 denotes OsXTR2
T34821 303-309 http://identifiers.org/rapdb.locus/Os02g0696500 denotes OsXTR3
T60211 315-321 http://identifiers.org/rapdb.locus/Os04g0631200 denotes OsXTR4
T67966 519-525 http://identifiers.org/rapdb.locus/Os11g0539200 denotes OsXTR1
T57173 530-536 http://identifiers.org/rapdb.locus/Os02g0696500 denotes OsXTR3
T59784 600-606 http://identifiers.org/rapdb.locus/Os06g0696400 denotes OsXTR2
T56393 611-617 http://identifiers.org/rapdb.locus/Os04g0631200 denotes OsXTR4
T92229 777-783 http://identifiers.org/rapdb.locus/Os11g0539200 denotes OsXTR1
T2064 788-794 http://identifiers.org/rapdb.locus/Os02g0696500 denotes OsXTR3
T76477 869-875 http://identifiers.org/rapdb.locus/Os06g0696400 denotes OsXTR2
T69222 880-886 http://identifiers.org/rapdb.locus/Os04g0631200 denotes OsXTR4
T5737 1035-1041 http://identifiers.org/rapdb.locus/Os11g0539200 denotes OsXTR1
T2242 1046-1052 http://identifiers.org/rapdb.locus/Os02g0696500 denotes OsXTR3
T15720 1141-1147 http://identifiers.org/rapdb.locus/Os06g0696400 denotes OsXTR2
T60187 1152-1158 http://identifiers.org/rapdb.locus/Os04g0631200 denotes OsXTR4
T64352 1215-1221 http://identifiers.org/rapdb.locus/Os11g0539200 denotes OsXTR1
T62092 1226-1232 http://identifiers.org/rapdb.locus/Os02g0696500 denotes OsXTR3

PMID_GLOBAL

Id Subject Object Predicate Lexical cue
T1 0-46 Sentence denotes Characterization of XET-related genes of rice.
T2 47-251 Sentence denotes To elucidate the mechanism of internodal elongation in rice (Oryza sativa L.), we analyzed genes encoding xyloglucan endotransglycosylase (XET), a cell wall-loosening enzyme essential for cell elongation.
T3 252-393 Sentence denotes Four rice XET-related (XTR) genes, OsXTR1, OsXTR2, OsXTR3, and OsXTR4, were isolated and their expression patterns in rice plants determined.
T4 394-518 Sentence denotes The expression of the four XTR genes showed different patterns of organ specificity and responses to several plant hormones.
T5 519-661 Sentence denotes OsXTR1 and OsXTR3 were up-regulated by gibberellin and brassinosteroids, whereas OsXTR2 and OsXTR4 showed no clear response to these hormones.
T6 662-776 Sentence denotes Expression of the four XTR genes was also investigated in elongating internodes at different developmental stages.
T7 777-968 Sentence denotes OsXTR1 and OsXTR3 were preferentially expressed in the elongating zone of internodes, while OsXTR2 and OsXTR4 were expressed in nodes and in the divisional and elongating zones of internodes.
T8 969-1159 Sentence denotes In three genetic mutants with abnormal heights, the expression of OsXTR1 and OsXTR3 correlated with the height of the mutants, whereas no such correlation was observed for OsXTR2 and OsXTR4.
T9 1160-1275 Sentence denotes Based on these observations, we discuss the roles that OsXTR1 and OsXTR3 may play in internodal elongation in rice.

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 108-120 hunflair:NA:Species denotes Oryza sativa
M_1 287-293 hunflair:NA:Gene denotes OsXTR1
M_2 519-525 hunflair:NA:Gene denotes OsXTR1
M_3 777-783 hunflair:NA:Gene denotes OsXTR1
M_4 1035-1041 hunflair:NA:Gene denotes OsXTR1
M_5 1215-1221 hunflair:NA:Gene denotes OsXTR1
M_6 20-23 hunflair:NA:Gene denotes XET
M_7 186-189 hunflair:NA:Gene denotes XET
M_8 262-265 hunflair:NA:Gene denotes XET
M_9 303-309 hunflair:NA:Gene denotes OsXTR3
M_10 530-536 hunflair:NA:Gene denotes OsXTR3
M_11 788-794 hunflair:NA:Gene denotes OsXTR3
M_12 1046-1052 hunflair:NA:Gene denotes OsXTR3
M_13 1226-1232 hunflair:NA:Gene denotes OsXTR3
M_14 41-45 hunflair:NA:Species denotes rice
M_15 102-106 hunflair:NA:Species denotes rice
M_16 257-261 hunflair:NA:Species denotes rice
M_17 370-374 hunflair:NA:Species denotes rice
M_18 1270-1274 hunflair:NA:Species denotes rice
M_19 558-569 hunflair:NA:Chemical denotes gibberellin
M_20 295-301 hunflair:NA:Gene denotes OsXTR2
M_21 600-606 hunflair:NA:Gene denotes OsXTR2
M_22 869-875 hunflair:NA:Gene denotes OsXTR2
M_23 1141-1147 hunflair:NA:Gene denotes OsXTR2
M_24 275-278 hunflair:NA:Gene denotes XTR
M_25 421-424 hunflair:NA:Gene denotes XTR
M_26 685-688 hunflair:NA:Gene denotes XTR
M_27 153-184 hunflair:NA:Gene denotes xyloglucan endotransglycosylase
M_28 574-590 hunflair:NA:Chemical denotes brassinosteroids
M_29 315-321 hunflair:NA:Gene denotes OsXTR4
M_30 611-617 hunflair:NA:Gene denotes OsXTR4
M_31 880-886 hunflair:NA:Gene denotes OsXTR4
M_32 1152-1158 hunflair:NA:Gene denotes OsXTR4
M_33 558-569 hunflair:NA:Gene denotes gibberellin

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 287-293 http://identifiers.org/oryzabase.gene/6500 denotes OsXTR1
T2 295-301 http://identifiers.org/oryzabase.gene/6491 denotes OsXTR2
T3 303-309 http://identifiers.org/oryzabase.gene/6504 denotes OsXTR3
T4 315-321 http://identifiers.org/oryzabase.gene/6511 denotes OsXTR4
T5 519-525 http://identifiers.org/oryzabase.gene/6500 denotes OsXTR1
T6 530-536 http://identifiers.org/oryzabase.gene/6504 denotes OsXTR3
T7 600-606 http://identifiers.org/oryzabase.gene/6491 denotes OsXTR2
T8 611-617 http://identifiers.org/oryzabase.gene/6511 denotes OsXTR4
T9 777-783 http://identifiers.org/oryzabase.gene/6500 denotes OsXTR1
T10 788-794 http://identifiers.org/oryzabase.gene/6504 denotes OsXTR3
T11 869-875 http://identifiers.org/oryzabase.gene/6491 denotes OsXTR2
T12 880-886 http://identifiers.org/oryzabase.gene/6511 denotes OsXTR4
T13 1035-1041 http://identifiers.org/oryzabase.gene/6500 denotes OsXTR1
T14 1046-1052 http://identifiers.org/oryzabase.gene/6504 denotes OsXTR3
T15 1141-1147 http://identifiers.org/oryzabase.gene/6491 denotes OsXTR2
T16 1152-1158 http://identifiers.org/oryzabase.gene/6511 denotes OsXTR4
T17 1215-1221 http://identifiers.org/oryzabase.gene/6500 denotes OsXTR1
T18 1226-1232 http://identifiers.org/oryzabase.gene/6504 denotes OsXTR3
T5072 287-293 http://identifiers.org/ricegap/LOC_Os11g33270 denotes OsXTR1
T49082 295-301 http://identifiers.org/ricegap/LOC_Os06g48160 denotes OsXTR2
T10074 303-309 http://identifiers.org/ricegap/LOC_Os02g46910 denotes OsXTR3
T11332 315-321 http://identifiers.org/ricegap/LOC_Os04g53950 denotes OsXTR4
T27242 519-525 http://identifiers.org/ricegap/LOC_Os11g33270 denotes OsXTR1
T80702 530-536 http://identifiers.org/ricegap/LOC_Os02g46910 denotes OsXTR3
T37163 600-606 http://identifiers.org/ricegap/LOC_Os06g48160 denotes OsXTR2
T41111 611-617 http://identifiers.org/ricegap/LOC_Os04g53950 denotes OsXTR4
T25394 777-783 http://identifiers.org/ricegap/LOC_Os11g33270 denotes OsXTR1
T21479 788-794 http://identifiers.org/ricegap/LOC_Os02g46910 denotes OsXTR3
T31701 869-875 http://identifiers.org/ricegap/LOC_Os06g48160 denotes OsXTR2
T34259 880-886 http://identifiers.org/ricegap/LOC_Os04g53950 denotes OsXTR4
T65105 1035-1041 http://identifiers.org/ricegap/LOC_Os11g33270 denotes OsXTR1
T84325 1046-1052 http://identifiers.org/ricegap/LOC_Os02g46910 denotes OsXTR3
T90755 1141-1147 http://identifiers.org/ricegap/LOC_Os06g48160 denotes OsXTR2
T13321 1152-1158 http://identifiers.org/ricegap/LOC_Os04g53950 denotes OsXTR4
T67840 1215-1221 http://identifiers.org/ricegap/LOC_Os11g33270 denotes OsXTR1
T32807 1226-1232 http://identifiers.org/ricegap/LOC_Os02g46910 denotes OsXTR3
T44623 287-293 http://identifiers.org/rapdb.locus/Os11g0539200 denotes OsXTR1
T40660 295-301 http://identifiers.org/rapdb.locus/Os06g0696400 denotes OsXTR2
T45215 303-309 http://identifiers.org/rapdb.locus/Os02g0696500 denotes OsXTR3
T49039 315-321 http://identifiers.org/rapdb.locus/Os04g0631200 denotes OsXTR4
T46889 519-525 http://identifiers.org/rapdb.locus/Os11g0539200 denotes OsXTR1
T21826 530-536 http://identifiers.org/rapdb.locus/Os02g0696500 denotes OsXTR3
T67163 600-606 http://identifiers.org/rapdb.locus/Os06g0696400 denotes OsXTR2
T9904 611-617 http://identifiers.org/rapdb.locus/Os04g0631200 denotes OsXTR4
T94594 777-783 http://identifiers.org/rapdb.locus/Os11g0539200 denotes OsXTR1
T74279 788-794 http://identifiers.org/rapdb.locus/Os02g0696500 denotes OsXTR3
T37549 869-875 http://identifiers.org/rapdb.locus/Os06g0696400 denotes OsXTR2
T24223 880-886 http://identifiers.org/rapdb.locus/Os04g0631200 denotes OsXTR4
T30438 1035-1041 http://identifiers.org/rapdb.locus/Os11g0539200 denotes OsXTR1
T15335 1046-1052 http://identifiers.org/rapdb.locus/Os02g0696500 denotes OsXTR3
T82903 1141-1147 http://identifiers.org/rapdb.locus/Os06g0696400 denotes OsXTR2
T2056 1152-1158 http://identifiers.org/rapdb.locus/Os04g0631200 denotes OsXTR4
T47618 1215-1221 http://identifiers.org/rapdb.locus/Os11g0539200 denotes OsXTR1
T33141 1226-1232 http://identifiers.org/rapdb.locus/Os02g0696500 denotes OsXTR3
T40195 287-293 http://identifiers.org/uniprot/E6Y2S0 denotes OsXTR1
T4970 295-301 http://identifiers.org/uniprot/Q56TP0 denotes OsXTR2
T64784 303-309 http://identifiers.org/uniprot/C5IG71 denotes OsXTR3
T83998 303-309 http://identifiers.org/uniprot/A6MZP8 denotes OsXTR3
T24133 315-321 http://identifiers.org/uniprot/Q25A17 denotes OsXTR4
T76220 315-321 http://identifiers.org/uniprot/B7ENX5 denotes OsXTR4
T4843 519-525 http://identifiers.org/uniprot/E6Y2S0 denotes OsXTR1
T29696 530-536 http://identifiers.org/uniprot/C5IG71 denotes OsXTR3
T92370 530-536 http://identifiers.org/uniprot/A6MZP8 denotes OsXTR3
T93989 600-606 http://identifiers.org/uniprot/Q56TP0 denotes OsXTR2
T17234 611-617 http://identifiers.org/uniprot/Q25A17 denotes OsXTR4
T59236 611-617 http://identifiers.org/uniprot/B7ENX5 denotes OsXTR4
T54898 777-783 http://identifiers.org/uniprot/E6Y2S0 denotes OsXTR1
T70235 788-794 http://identifiers.org/uniprot/C5IG71 denotes OsXTR3
T12574 788-794 http://identifiers.org/uniprot/A6MZP8 denotes OsXTR3
T19210 869-875 http://identifiers.org/uniprot/Q56TP0 denotes OsXTR2
T13676 880-886 http://identifiers.org/uniprot/Q25A17 denotes OsXTR4
T67666 880-886 http://identifiers.org/uniprot/B7ENX5 denotes OsXTR4
T19 1035-1041 http://identifiers.org/uniprot/E6Y2S0 denotes OsXTR1
T20 1046-1052 http://identifiers.org/uniprot/C5IG71 denotes OsXTR3
T21 1046-1052 http://identifiers.org/uniprot/A6MZP8 denotes OsXTR3
T22 1141-1147 http://identifiers.org/uniprot/Q56TP0 denotes OsXTR2
T23 1152-1158 http://identifiers.org/uniprot/Q25A17 denotes OsXTR4
T24 1152-1158 http://identifiers.org/uniprot/B7ENX5 denotes OsXTR4
T25 1215-1221 http://identifiers.org/uniprot/E6Y2S0 denotes OsXTR1
T26 1226-1232 http://identifiers.org/uniprot/C5IG71 denotes OsXTR3
T27 1226-1232 http://identifiers.org/uniprot/A6MZP8 denotes OsXTR3
M_0 108-120 hunflair:NA:Species denotes Oryza sativa
M_1 287-293 hunflair:NA:Gene denotes OsXTR1
M_2 519-525 hunflair:NA:Gene denotes OsXTR1
M_3 777-783 hunflair:NA:Gene denotes OsXTR1
M_4 1035-1041 hunflair:NA:Gene denotes OsXTR1
M_5 1215-1221 hunflair:NA:Gene denotes OsXTR1
M_6 20-23 hunflair:NA:Gene denotes XET
M_7 186-189 hunflair:NA:Gene denotes XET
M_8 262-265 hunflair:NA:Gene denotes XET
M_9 303-309 hunflair:NA:Gene denotes OsXTR3
M_10 530-536 hunflair:NA:Gene denotes OsXTR3
M_11 788-794 hunflair:NA:Gene denotes OsXTR3
M_12 1046-1052 hunflair:NA:Gene denotes OsXTR3
M_13 1226-1232 hunflair:NA:Gene denotes OsXTR3
M_14 41-45 hunflair:NA:Species denotes rice
M_15 102-106 hunflair:NA:Species denotes rice
M_16 257-261 hunflair:NA:Species denotes rice
M_17 370-374 hunflair:NA:Species denotes rice
M_18 1270-1274 hunflair:NA:Species denotes rice
M_19 558-569 hunflair:NA:Chemical denotes gibberellin
M_20 295-301 hunflair:NA:Gene denotes OsXTR2
M_21 600-606 hunflair:NA:Gene denotes OsXTR2
M_22 869-875 hunflair:NA:Gene denotes OsXTR2
M_23 1141-1147 hunflair:NA:Gene denotes OsXTR2
M_24 275-278 hunflair:NA:Gene denotes XTR
M_25 421-424 hunflair:NA:Gene denotes XTR
M_26 685-688 hunflair:NA:Gene denotes XTR
M_27 153-184 hunflair:NA:Gene denotes xyloglucan endotransglycosylase
M_28 574-590 hunflair:NA:Chemical denotes brassinosteroids
M_29 315-321 hunflair:NA:Gene denotes OsXTR4
M_30 611-617 hunflair:NA:Gene denotes OsXTR4
M_31 880-886 hunflair:NA:Gene denotes OsXTR4
M_32 1152-1158 hunflair:NA:Gene denotes OsXTR4
M_33 558-569 hunflair:NA:Gene denotes gibberellin

OryzaGP

Id Subject Object Predicate Lexical cue
T1 287-293 gene denotes OsXTR1
T2 295-301 gene denotes OsXTR2
T3 303-309 gene denotes OsXTR3
T4 315-321 gene denotes OsXTR4
T5 519-525 gene denotes OsXTR1
T6 530-536 gene denotes OsXTR3
T7 600-606 gene denotes OsXTR2
T8 611-617 gene denotes OsXTR4
T9 777-783 gene denotes OsXTR1
T10 788-794 gene denotes OsXTR3
T11 869-875 gene denotes OsXTR2
T12 880-886 gene denotes OsXTR4
T13 1035-1041 gene denotes OsXTR1
T14 1046-1052 gene denotes OsXTR3
T15 1141-1147 gene denotes OsXTR2
T16 1152-1158 gene denotes OsXTR4
T17 1215-1221 gene denotes OsXTR1
T18 1226-1232 gene denotes OsXTR3

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-46 Sentence denotes Characterization of XET-related genes of rice.
T2 47-251 Sentence denotes To elucidate the mechanism of internodal elongation in rice (Oryza sativa L.), we analyzed genes encoding xyloglucan endotransglycosylase (XET), a cell wall-loosening enzyme essential for cell elongation.
T3 252-393 Sentence denotes Four rice XET-related (XTR) genes, OsXTR1, OsXTR2, OsXTR3, and OsXTR4, were isolated and their expression patterns in rice plants determined.
T4 394-518 Sentence denotes The expression of the four XTR genes showed different patterns of organ specificity and responses to several plant hormones.
T5 519-661 Sentence denotes OsXTR1 and OsXTR3 were up-regulated by gibberellin and brassinosteroids, whereas OsXTR2 and OsXTR4 showed no clear response to these hormones.
T6 662-776 Sentence denotes Expression of the four XTR genes was also investigated in elongating internodes at different developmental stages.
T7 777-968 Sentence denotes OsXTR1 and OsXTR3 were preferentially expressed in the elongating zone of internodes, while OsXTR2 and OsXTR4 were expressed in nodes and in the divisional and elongating zones of internodes.
T8 969-1159 Sentence denotes In three genetic mutants with abnormal heights, the expression of OsXTR1 and OsXTR3 correlated with the height of the mutants, whereas no such correlation was observed for OsXTR2 and OsXTR4.
T9 1160-1275 Sentence denotes Based on these observations, we discuss the roles that OsXTR1 and OsXTR3 may play in internodal elongation in rice.