PubMed:10642608
Annnotations
Glycosmos6-MAT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 15-23 | http://purl.obolibrary.org/obo/MAT_0000078 | denotes | prostate |
| T2 | 77-85 | http://purl.obolibrary.org/obo/MAT_0000078 | denotes | prostate |
| T3 | 149-157 | http://purl.obolibrary.org/obo/MAT_0000078 | denotes | prostate |
| T4 | 176-184 | http://purl.obolibrary.org/obo/MAT_0000078 | denotes | prostate |
| T5 | 687-695 | http://purl.obolibrary.org/obo/MAT_0000078 | denotes | prostate |
| T6 | 977-985 | http://purl.obolibrary.org/obo/MAT_0000078 | denotes | prostate |
| T7 | 1010-1018 | http://purl.obolibrary.org/obo/MAT_0000078 | denotes | prostate |
| T8 | 1125-1133 | http://purl.obolibrary.org/obo/MAT_0000078 | denotes | prostate |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| TextSentencer_T1 | 0-41 | Sentence | denotes | Glycotyping of prostate specific antigen. |
| TextSentencer_T2 | 42-197 | Sentence | denotes | Measurement of serum levels of the prostate specific antigen (PSA) is now widely used for the diagnosis of prostate cancer and benign prostate hyperplasia. |
| TextSentencer_T3 | 198-400 | Sentence | denotes | This serum marker is of value since it is derived only from the tissue of interest, but increased levels of PSA in serum do not allow a completely clear cut diagnosis of benign versus malignant changes. |
| TextSentencer_T4 | 401-703 | Sentence | denotes | Since PSA is a glycoprotein with one asparagine linked oligosaccharide, and since malignant transformation often leads to an increased branching of such oligosaccharides, we initially studied the asparagine linked structures on PSA made by a cell line derived from malignant metastatic prostate tissue. |
| TextSentencer_T5 | 704-884 | Sentence | denotes | We observed that unlike normal PSA, which bears only biantennary oligosaccharides, PSA from the metastatic cell line has a mixture of biantennary and triantennary oligosaccharides. |
| TextSentencer_T6 | 885-1141 | Sentence | denotes | Further experiments will reveal carbohydrate differences derived from the PSA from sera or, prostate tissue of normal versus prostate cancer patients, and of the utility of such carbo-hydrate differences as a possible diagnostic marker for prostate cancer. |
| T1 | 0-41 | Sentence | denotes | Glycotyping of prostate specific antigen. |
| T2 | 42-197 | Sentence | denotes | Measurement of serum levels of the prostate specific antigen (PSA) is now widely used for the diagnosis of prostate cancer and benign prostate hyperplasia. |
| T3 | 198-400 | Sentence | denotes | This serum marker is of value since it is derived only from the tissue of interest, but increased levels of PSA in serum do not allow a completely clear cut diagnosis of benign versus malignant changes. |
| T4 | 401-703 | Sentence | denotes | Since PSA is a glycoprotein with one asparagine linked oligosaccharide, and since malignant transformation often leads to an increased branching of such oligosaccharides, we initially studied the asparagine linked structures on PSA made by a cell line derived from malignant metastatic prostate tissue. |
| T5 | 704-884 | Sentence | denotes | We observed that unlike normal PSA, which bears only biantennary oligosaccharides, PSA from the metastatic cell line has a mixture of biantennary and triantennary oligosaccharides. |
| T6 | 885-1141 | Sentence | denotes | Further experiments will reveal carbohydrate differences derived from the PSA from sera or, prostate tissue of normal versus prostate cancer patients, and of the utility of such carbo-hydrate differences as a possible diagnostic marker for prostate cancer. |
| T1 | 0-41 | Sentence | denotes | Glycotyping of prostate specific antigen. |
| T2 | 42-197 | Sentence | denotes | Measurement of serum levels of the prostate specific antigen (PSA) is now widely used for the diagnosis of prostate cancer and benign prostate hyperplasia. |
| T3 | 198-400 | Sentence | denotes | This serum marker is of value since it is derived only from the tissue of interest, but increased levels of PSA in serum do not allow a completely clear cut diagnosis of benign versus malignant changes. |
| T4 | 401-703 | Sentence | denotes | Since PSA is a glycoprotein with one asparagine linked oligosaccharide, and since malignant transformation often leads to an increased branching of such oligosaccharides, we initially studied the asparagine linked structures on PSA made by a cell line derived from malignant metastatic prostate tissue. |
| T5 | 704-884 | Sentence | denotes | We observed that unlike normal PSA, which bears only biantennary oligosaccharides, PSA from the metastatic cell line has a mixture of biantennary and triantennary oligosaccharides. |
| T6 | 885-1141 | Sentence | denotes | Further experiments will reveal carbohydrate differences derived from the PSA from sera or, prostate tissue of normal versus prostate cancer patients, and of the utility of such carbo-hydrate differences as a possible diagnostic marker for prostate cancer. |
PubmedHPO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 149-164 | HP_0012125 | denotes | prostate cancer |
| T2 | 158-184 | HP_0012125 | denotes | cancer and benign prostate |
| T3 | 158-164 | HP_0002664 | denotes | cancer |
| T4 | 169-196 | HP_0008711 | denotes | benign prostate hyperplasia |
| T5 | 1010-1025 | HP_0012125 | denotes | prostate cancer |
| T6 | 1019-1025 | HP_0002664 | denotes | cancer |
| T7 | 1125-1140 | HP_0012125 | denotes | prostate cancer |
| T8 | 1134-1140 | HP_0002664 | denotes | cancer |
ICD10
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 176-196 | http://purl.bioontology.org/ontology/ICD10/N40 | denotes | prostate hyperplasia |
GlycoBiology-FMA
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| _T1 | 15-23 | FMAID:97485 | denotes | prostate |
| _T2 | 15-23 | FMAID:9600 | denotes | prostate |
| _T3 | 57-62 | FMAID:167330 | denotes | serum |
| _T4 | 77-85 | FMAID:97485 | denotes | prostate |
| _T5 | 77-85 | FMAID:9600 | denotes | prostate |
| _T6 | 149-157 | FMAID:9600 | denotes | prostate |
| _T7 | 149-157 | FMAID:97485 | denotes | prostate |
| _T8 | 176-184 | FMAID:9600 | denotes | prostate |
| _T9 | 176-184 | FMAID:97485 | denotes | prostate |
| _T10 | 203-208 | FMAID:167330 | denotes | serum |
| _T11 | 262-268 | FMAID:256050 | denotes | tissue |
| _T12 | 313-318 | FMAID:167330 | denotes | serum |
| _T13 | 416-428 | FMAID:167256 | denotes | glycoprotein |
| _T14 | 416-428 | FMAID:62925 | denotes | glycoprotein |
| _T15 | 438-448 | FMAID:82750 | denotes | asparagine |
| _T16 | 438-448 | FMAID:196739 | denotes | asparagine |
| _T17 | 456-471 | FMAID:196731 | denotes | oligosaccharide |
| _T18 | 456-471 | FMAID:82742 | denotes | oligosaccharide |
| _T19 | 536-545 | FMAID:226027 | denotes | branching |
| _T20 | 536-545 | FMAID:226028 | denotes | branching |
| _T21 | 554-570 | FMAID:196731 | denotes | oligosaccharides |
| _T22 | 554-570 | FMAID:82742 | denotes | oligosaccharides |
| _T23 | 597-607 | FMAID:196739 | denotes | asparagine |
| _T24 | 597-607 | FMAID:82750 | denotes | asparagine |
| _T25 | 687-695 | FMAID:9600 | denotes | prostate |
| _T26 | 687-695 | FMAID:97485 | denotes | prostate |
| _T27 | 696-702 | FMAID:256050 | denotes | tissue |
| _T28 | 769-785 | FMAID:196731 | denotes | oligosaccharides |
| _T29 | 769-785 | FMAID:82742 | denotes | oligosaccharides |
| _T30 | 867-883 | FMAID:196731 | denotes | oligosaccharides |
| _T31 | 867-883 | FMAID:82742 | denotes | oligosaccharides |
| _T32 | 917-929 | FMAID:197276 | denotes | carbohydrate |
| _T33 | 917-929 | FMAID:82737 | denotes | carbohydrate |
| _T34 | 977-985 | FMAID:97485 | denotes | prostate |
| _T35 | 977-985 | FMAID:9600 | denotes | prostate |
| _T36 | 986-992 | FMAID:256050 | denotes | tissue |
| _T37 | 1010-1018 | FMAID:9600 | denotes | prostate |
| _T38 | 1010-1018 | FMAID:97485 | denotes | prostate |
| _T39 | 1125-1133 | FMAID:9600 | denotes | prostate |
| _T40 | 1125-1133 | FMAID:97485 | denotes | prostate |
uniprot-human
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 15-40 | http://www.uniprot.org/uniprot/P07288 | denotes | prostate specific antigen |
| T2 | 77-102 | http://www.uniprot.org/uniprot/P07288 | denotes | prostate specific antigen |
| T3 | 104-107 | http://www.uniprot.org/uniprot/P07288 | denotes | PSA |
| T4 | 306-309 | http://www.uniprot.org/uniprot/P07288 | denotes | PSA |
| T5 | 407-410 | http://www.uniprot.org/uniprot/P07288 | denotes | PSA |
| T6 | 629-632 | http://www.uniprot.org/uniprot/P07288 | denotes | PSA |
| T7 | 735-738 | http://www.uniprot.org/uniprot/P07288 | denotes | PSA |
| T8 | 787-790 | http://www.uniprot.org/uniprot/P07288 | denotes | PSA |
| T9 | 959-962 | http://www.uniprot.org/uniprot/P07288 | denotes | PSA |
| T10 | 15-40 | http://www.uniprot.org/uniprot/Q16305 | denotes | prostate specific antigen |
| T11 | 77-102 | http://www.uniprot.org/uniprot/Q16305 | denotes | prostate specific antigen |
| T12 | 104-107 | http://www.uniprot.org/uniprot/Q9Y617 | denotes | PSA |
| T13 | 306-309 | http://www.uniprot.org/uniprot/Q9Y617 | denotes | PSA |
| T14 | 407-410 | http://www.uniprot.org/uniprot/Q9Y617 | denotes | PSA |
| T15 | 629-632 | http://www.uniprot.org/uniprot/Q9Y617 | denotes | PSA |
| T16 | 735-738 | http://www.uniprot.org/uniprot/Q9Y617 | denotes | PSA |
| T17 | 787-790 | http://www.uniprot.org/uniprot/Q9Y617 | denotes | PSA |
| T18 | 959-962 | http://www.uniprot.org/uniprot/Q9Y617 | denotes | PSA |
| T19 | 104-107 | http://www.uniprot.org/uniprot/P55786 | denotes | PSA |
| T20 | 306-309 | http://www.uniprot.org/uniprot/P55786 | denotes | PSA |
| T21 | 407-410 | http://www.uniprot.org/uniprot/P55786 | denotes | PSA |
| T22 | 629-632 | http://www.uniprot.org/uniprot/P55786 | denotes | PSA |
| T23 | 735-738 | http://www.uniprot.org/uniprot/P55786 | denotes | PSA |
| T24 | 787-790 | http://www.uniprot.org/uniprot/P55786 | denotes | PSA |
| T25 | 959-962 | http://www.uniprot.org/uniprot/P55786 | denotes | PSA |
uniprot-mouse
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 104-107 | http://www.uniprot.org/uniprot/Q11011 | denotes | PSA |
| T2 | 306-309 | http://www.uniprot.org/uniprot/Q11011 | denotes | PSA |
| T3 | 407-410 | http://www.uniprot.org/uniprot/Q11011 | denotes | PSA |
| T4 | 629-632 | http://www.uniprot.org/uniprot/Q11011 | denotes | PSA |
| T5 | 735-738 | http://www.uniprot.org/uniprot/Q11011 | denotes | PSA |
| T6 | 787-790 | http://www.uniprot.org/uniprot/Q11011 | denotes | PSA |
| T7 | 959-962 | http://www.uniprot.org/uniprot/Q11011 | denotes | PSA |
GlycoBiology-NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 158-164 | http://purl.bioontology.org/ontology/NCBITAXON/6754 | denotes | cancer |
| T2 | 262-268 | http://purl.bioontology.org/ontology/STY/T024 | denotes | tissue |
| T3 | 696-702 | http://purl.bioontology.org/ontology/STY/T024 | denotes | tissue |
| T4 | 986-992 | http://purl.bioontology.org/ontology/STY/T024 | denotes | tissue |
| T5 | 1019-1025 | http://purl.bioontology.org/ontology/NCBITAXON/6754 | denotes | cancer |
| T6 | 1134-1140 | http://purl.bioontology.org/ontology/NCBITAXON/6754 | denotes | cancer |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 968-972 | http://purl.obolibrary.org/obo/GO_0004617 | denotes | sera |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 643-647 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T2 | 811-815 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
UBERON-AE
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 57-62 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
| T2 | 203-208 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
| T3 | 313-318 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
| T4 | 262-268 | http://purl.obolibrary.org/obo/UBERON_0000479 | denotes | tissue |
| T5 | 696-702 | http://purl.obolibrary.org/obo/UBERON_0000479 | denotes | tissue |
| T6 | 986-992 | http://purl.obolibrary.org/obo/UBERON_0000479 | denotes | tissue |
EDAM-topics
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 33-40 | http://edamontology.org/topic_2830 | denotes | antigen |
| T2 | 95-102 | http://edamontology.org/topic_2830 | denotes | antigen |
| T3 | 158-164 | http://edamontology.org/topic_2640 | denotes | cancer |
| T4 | 585-592 | http://edamontology.org/topic_3678 | denotes | studied |
| T5 | 917-929 | http://edamontology.org/topic_0152 | denotes | carbohydrate |
| T6 | 1019-1025 | http://edamontology.org/topic_2640 | denotes | cancer |
| T7 | 1103-1120 | http://edamontology.org/topic_3360 | denotes | diagnostic marker |
| T8 | 1134-1140 | http://edamontology.org/topic_2640 | denotes | cancer |
EDAM-DFO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 42-53 | http://edamontology.org/data_3108 | denotes | Measurement |
| T2 | 615-625 | http://edamontology.org/data_0883 | denotes | structures |
| T3 | 728-734 | http://edamontology.org/operation_3435 | denotes | normal |
| T4 | 996-1002 | http://edamontology.org/operation_3435 | denotes | normal |
GlycoBiology-MAT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 15-23 | http://purl.obolibrary.org/obo/MAT_0000078 | denotes | prostate |
| T2 | 77-85 | http://purl.obolibrary.org/obo/MAT_0000078 | denotes | prostate |
| T3 | 149-157 | http://purl.obolibrary.org/obo/MAT_0000078 | denotes | prostate |
| T4 | 176-184 | http://purl.obolibrary.org/obo/MAT_0000078 | denotes | prostate |
| T5 | 687-695 | http://purl.obolibrary.org/obo/MAT_0000078 | denotes | prostate |
| T6 | 977-985 | http://purl.obolibrary.org/obo/MAT_0000078 | denotes | prostate |
| T7 | 1010-1018 | http://purl.obolibrary.org/obo/MAT_0000078 | denotes | prostate |
| T8 | 1125-1133 | http://purl.obolibrary.org/obo/MAT_0000078 | denotes | prostate |
performance-test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-UBERON-AE-B_T1 | 57-62 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
| PD-UBERON-AE-B_T2 | 203-208 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
| PD-UBERON-AE-B_T3 | 313-318 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
| PD-UBERON-AE-B_T4 | 262-268 | http://purl.obolibrary.org/obo/UBERON_0000479 | denotes | tissue |
| PD-UBERON-AE-B_T5 | 696-702 | http://purl.obolibrary.org/obo/UBERON_0000479 | denotes | tissue |
| PD-UBERON-AE-B_T6 | 986-992 | http://purl.obolibrary.org/obo/UBERON_0000479 | denotes | tissue |
Lectin
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| Lectin_T1 | 104-107 | https://acgg.asia/db/lfdb/LfDB0181 | denotes | PSA |
| Lectin_T2 | 306-309 | https://acgg.asia/db/lfdb/LfDB0181 | denotes | PSA |
| Lectin_T3 | 407-410 | https://acgg.asia/db/lfdb/LfDB0181 | denotes | PSA |
| Lectin_T4 | 629-632 | https://acgg.asia/db/lfdb/LfDB0181 | denotes | PSA |
| Lectin_T5 | 735-738 | https://acgg.asia/db/lfdb/LfDB0181 | denotes | PSA |
| Lectin_T6 | 787-790 | https://acgg.asia/db/lfdb/LfDB0181 | denotes | PSA |
| Lectin_T7 | 959-962 | https://acgg.asia/db/lfdb/LfDB0181 | denotes | PSA |
mondo_disease
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 149-164 | Disease | denotes | prostate cancer | http://purl.obolibrary.org/obo/MONDO_0008315 |
| T2 | 169-196 | Disease | denotes | benign prostate hyperplasia | http://purl.obolibrary.org/obo/MONDO_0010811 |
| T3 | 1010-1025 | Disease | denotes | prostate cancer | http://purl.obolibrary.org/obo/MONDO_0008315 |
| T4 | 1125-1140 | Disease | denotes | prostate cancer | http://purl.obolibrary.org/obo/MONDO_0008315 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 15-23 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/UBERON_0002367 |
| T2 | 77-85 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/UBERON_0002367 |
| T3 | 149-157 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/UBERON_0002367 |
| T4 | 176-184 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/UBERON_0002367 |
| T5 | 262-268 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T6 | 687-695 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/UBERON_0002367 |
| T7 | 696-702 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T8 | 977-985 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/UBERON_0002367 |
| T9 | 986-992 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T10 | 1010-1018 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/UBERON_0002367 |
| T11 | 1125-1133 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/UBERON_0002367 |
Anatomy-MAT
| Id | Subject | Object | Predicate | Lexical cue | mat_id |
|---|---|---|---|---|---|
| T1 | 15-23 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/MAT_0000078 |
| T2 | 77-85 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/MAT_0000078 |
| T3 | 149-157 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/MAT_0000078 |
| T4 | 176-184 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/MAT_0000078 |
| T5 | 687-695 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/MAT_0000078 |
| T6 | 977-985 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/MAT_0000078 |
| T7 | 1010-1018 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/MAT_0000078 |
| T8 | 1125-1133 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/MAT_0000078 |
HP-phenotype
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 149-164 | Phenotype | denotes | prostate cancer | HP:0012125 |
| T2 | 169-196 | Phenotype | denotes | benign prostate hyperplasia | HP:0008711 |
| T3 | 1010-1025 | Phenotype | denotes | prostate cancer | HP:0012125 |
| T4 | 1125-1140 | Phenotype | denotes | prostate cancer | HP:0012125 |