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PubMed:10570223 JSONTXT

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PubmedHPO

Id Subject Object Predicate Lexical cue
T1 1017-1041 HP_0100022 denotes involved in the movement

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 29-42 FMAID:196778 denotes glycopeptides
_T2 29-42 FMAID:82784 denotes glycopeptides
_T3 52-63 FMAID:165003 denotes endoplasmic
_T4 52-63 FMAID:66856 denotes endoplasmic
_T5 52-73 FMAID:63842 denotes endoplasmic reticulum
_T6 52-73 FMAID:165141 denotes endoplasmic reticulum
_T7 52-73 FMAID:199093 denotes endoplasmic reticulum
_T8 52-73 FMAID:165027 denotes endoplasmic reticulum
_T9 52-73 FMAID:66897 denotes endoplasmic reticulum
_T10 52-73 FMAID:165026 denotes endoplasmic reticulum
_T11 52-73 FMAID:188464 denotes endoplasmic reticulum
_T12 52-73 FMAID:80351 denotes endoplasmic reticulum
_T13 52-73 FMAID:66898 denotes endoplasmic reticulum
_T14 52-73 FMAID:211269 denotes endoplasmic reticulum
_T15 52-73 FMAID:67434 denotes endoplasmic reticulum
_T16 52-73 FMAID:210694 denotes endoplasmic reticulum
_T17 52-73 FMAID:165144 denotes endoplasmic reticulum
_T18 52-73 FMAID:210679 denotes endoplasmic reticulum
_T19 52-73 FMAID:212510 denotes endoplasmic reticulum
_T20 52-73 FMAID:165142 denotes endoplasmic reticulum
_T21 52-73 FMAID:165250 denotes endoplasmic reticulum
_T22 52-73 FMAID:67429 denotes endoplasmic reticulum
_T23 52-73 FMAID:67438 denotes endoplasmic reticulum
_T24 52-73 FMAID:162308 denotes endoplasmic reticulum
_T25 64-73 FMAID:7646 denotes reticulum
_T26 64-73 FMAID:94520 denotes reticulum
_T27 83-90 FMAID:256055 denotes cytosol
_T28 133-148 FMAID:196731 denotes oligosaccharide
_T29 133-148 FMAID:82742 denotes oligosaccharide
_T30 204-215 FMAID:165003 denotes endoplasmic
_T31 204-215 FMAID:66856 denotes endoplasmic
_T32 204-225 FMAID:165142 denotes endoplasmic reticulum
_T33 204-225 FMAID:199093 denotes endoplasmic reticulum
_T34 204-225 FMAID:67429 denotes endoplasmic reticulum
_T35 204-225 FMAID:165141 denotes endoplasmic reticulum
_T36 204-225 FMAID:67434 denotes endoplasmic reticulum
_T37 204-225 FMAID:165250 denotes endoplasmic reticulum
_T38 204-225 FMAID:212510 denotes endoplasmic reticulum
_T39 204-225 FMAID:67438 denotes endoplasmic reticulum
_T40 204-225 FMAID:165144 denotes endoplasmic reticulum
_T41 204-225 FMAID:162308 denotes endoplasmic reticulum
_T42 204-225 FMAID:210679 denotes endoplasmic reticulum
_T43 204-225 FMAID:63842 denotes endoplasmic reticulum
_T44 204-225 FMAID:210694 denotes endoplasmic reticulum
_T45 204-225 FMAID:66897 denotes endoplasmic reticulum
_T46 204-225 FMAID:80351 denotes endoplasmic reticulum
_T47 204-225 FMAID:66898 denotes endoplasmic reticulum
_T48 204-225 FMAID:165027 denotes endoplasmic reticulum
_T49 204-225 FMAID:211269 denotes endoplasmic reticulum
_T50 204-225 FMAID:165026 denotes endoplasmic reticulum
_T51 204-225 FMAID:188464 denotes endoplasmic reticulum
_T52 216-225 FMAID:94520 denotes reticulum
_T53 216-225 FMAID:7646 denotes reticulum
_T54 268-276 FMAID:67257 denotes proteins
_T55 268-276 FMAID:165447 denotes proteins
_T56 291-306 FMAID:62376 denotes folded proteins
_T57 291-306 FMAID:165911 denotes folded proteins
_T58 298-306 FMAID:67257 denotes proteins
_T59 298-306 FMAID:165447 denotes proteins
_T60 345-350 FMAID:68646 denotes cells
_T61 345-350 FMAID:169002 denotes cells
_T62 412-420 FMAID:67257 denotes proteins
_T63 412-420 FMAID:165447 denotes proteins
_T64 708-716 FMAID:165447 denotes proteins
_T65 708-716 FMAID:67257 denotes proteins
_T66 819-826 FMAID:256055 denotes cytosol
_T67 858-870 FMAID:82784 denotes glycopeptide
_T68 858-870 FMAID:196778 denotes glycopeptide
_T69 938-943 FMAID:169002 denotes cells
_T70 938-943 FMAID:68646 denotes cells
_T71 965-970 FMAID:68646 denotes cells
_T72 965-970 FMAID:169002 denotes cells
_T73 1045-1058 FMAID:82784 denotes glycopeptides
_T74 1045-1058 FMAID:196778 denotes glycopeptides
_T75 1078-1085 FMAID:256055 denotes cytosol
_T76 1473-1485 FMAID:196778 denotes glycopeptide
_T77 1473-1485 FMAID:82784 denotes glycopeptide
_T78 1518-1525 FMAID:256055 denotes cytosol
_T79 1589-1604 FMAID:196731 denotes oligosaccharide
_T80 1589-1604 FMAID:82742 denotes oligosaccharide
_T81 1618-1630 FMAID:82784 denotes glycopeptide
_T82 1618-1630 FMAID:196778 denotes glycopeptide
_T83 1678-1690 FMAID:82784 denotes glycopeptide
_T84 1678-1690 FMAID:196778 denotes glycopeptide
_T85 1757-1770 FMAID:196778 denotes glycopeptides
_T86 1757-1770 FMAID:82784 denotes glycopeptides
_T87 1806-1820 FMAID:62925 denotes glyco)proteins
_T88 1806-1820 FMAID:167256 denotes glyco)proteins
_T89 1812-1820 FMAID:67257 denotes proteins
_T90 1812-1820 FMAID:165447 denotes proteins

uniprot-human

Id Subject Object Predicate Lexical cue
T1 227-229 http://www.uniprot.org/uniprot/P03372 denotes ER
T2 466-468 http://www.uniprot.org/uniprot/P03372 denotes ER
T3 496-498 http://www.uniprot.org/uniprot/P03372 denotes ER
T4 758-760 http://www.uniprot.org/uniprot/P03372 denotes ER
T5 783-785 http://www.uniprot.org/uniprot/P03372 denotes ER
T6 1068-1070 http://www.uniprot.org/uniprot/P03372 denotes ER
T7 1508-1510 http://www.uniprot.org/uniprot/P03372 denotes ER
T8 554-560 http://www.uniprot.org/uniprot/Q96IV0 denotes PNGase

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 227-229 http://www.uniprot.org/uniprot/P19785 denotes ER
T2 466-468 http://www.uniprot.org/uniprot/P19785 denotes ER
T3 496-498 http://www.uniprot.org/uniprot/P19785 denotes ER
T4 758-760 http://www.uniprot.org/uniprot/P19785 denotes ER
T5 783-785 http://www.uniprot.org/uniprot/P19785 denotes ER
T6 1068-1070 http://www.uniprot.org/uniprot/P19785 denotes ER
T7 1508-1510 http://www.uniprot.org/uniprot/P19785 denotes ER
T8 554-560 http://www.uniprot.org/uniprot/Q9JI78 denotes PNGase

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 334-344 http://purl.bioontology.org/ontology/NCBITAXON/2759 denotes eukaryotic
T2 345-350 http://purl.bioontology.org/ontology/STY/T025 denotes cells
T3 938-943 http://purl.bioontology.org/ontology/STY/T025 denotes cells
T4 965-970 http://purl.bioontology.org/ontology/STY/T025 denotes cells
T5 1007-1016 http://purl.bioontology.org/ontology/NCBITAXON/127244 denotes mechanism
T6 1205-1220 http://purl.bioontology.org/ontology/NCBITAXON/8004 denotes electrophoretic
T7 1697-1704 http://purl.bioontology.org/ontology/STY/T033 denotes finding
T8 1723-1732 http://purl.bioontology.org/ontology/NCBITAXON/127244 denotes mechanism

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-156 Sentence denotes In yeast the export of small glycopeptides from the endoplasmic reticulum into the cytosol is not affected by the structure of their oligosaccharide chains.
TextSentencer_T2 157-368 Sentence denotes A "quality control" system associated with the endoplasmic reticulum (ER) that discriminates between misfolded proteins and correctly folded proteins is present in a variety of eukaryotic cells, including yeast.
TextSentencer_T3 369-539 Sentence denotes Recently, it has been shown that misfolded proteins that are N -glycosylated in the lumen of the ER are transported out of the ER, de-N-glycosylated by a soluble peptide:
TextSentencer_T4 540-603 Sentence denotes N -glycanase (PNGase) and degraded by action of the proteasome.
TextSentencer_T5 604-827 Sentence denotes It also has been shown that small N -glycosylatable peptides follow a fate similar to that of misfolded proteins, i.e., glycosylation in the lumen of the ER, transport out of the ER, and de- N -glycosylation in the cytosol.
TextSentencer_T6 828-971 Sentence denotes These processes of retrograde glycopeptide transport and de- N -glycosylation have been observed in mammalian cells, as well as in yeast cells.
TextSentencer_T7 972-1086 Sentence denotes However, little is known about the mechanism involved in the movement of glycopeptides from the ER to the cytosol.
TextSentencer_T8 1087-1297 Sentence denotes Here we report a simple method for assaying N -glycosylation/de- N -glycosylation by simple paper chromatographic and electrophoretic techniques using an N -glycosylatable(3)H-labeled tripeptide as a substrate.
TextSentencer_T9 1298-1526 Sentence denotes With this method, we confirmed the cytosolic localization of the de- N -glycosylated peptide, which supports the idea that de- N -glycosylation occurs after the export of the glycopeptide from the lumen of the ER to the cytosol.
TextSentencer_T10 1527-1691 Sentence denotes Further, we found that the variations in the structure of the oligosaccharide chain on the glycopeptide did not cause differences in the export of the glycopeptide.
TextSentencer_T11 1692-1821 Sentence denotes This finding suggests that the mechanism for the export of small glycopeptides may differ from that of misfolded (glyco)proteins.
T1 0-156 Sentence denotes In yeast the export of small glycopeptides from the endoplasmic reticulum into the cytosol is not affected by the structure of their oligosaccharide chains.
T2 157-368 Sentence denotes A "quality control" system associated with the endoplasmic reticulum (ER) that discriminates between misfolded proteins and correctly folded proteins is present in a variety of eukaryotic cells, including yeast.
T3 369-603 Sentence denotes Recently, it has been shown that misfolded proteins that are N -glycosylated in the lumen of the ER are transported out of the ER, de-N-glycosylated by a soluble peptide: N -glycanase (PNGase) and degraded by action of the proteasome.
T4 604-827 Sentence denotes It also has been shown that small N -glycosylatable peptides follow a fate similar to that of misfolded proteins, i.e., glycosylation in the lumen of the ER, transport out of the ER, and de- N -glycosylation in the cytosol.
T5 828-971 Sentence denotes These processes of retrograde glycopeptide transport and de- N -glycosylation have been observed in mammalian cells, as well as in yeast cells.
T6 972-1086 Sentence denotes However, little is known about the mechanism involved in the movement of glycopeptides from the ER to the cytosol.
T7 1087-1297 Sentence denotes Here we report a simple method for assaying N -glycosylation/de- N -glycosylation by simple paper chromatographic and electrophoretic techniques using an N -glycosylatable(3)H-labeled tripeptide as a substrate.
T8 1298-1526 Sentence denotes With this method, we confirmed the cytosolic localization of the de- N -glycosylated peptide, which supports the idea that de- N -glycosylation occurs after the export of the glycopeptide from the lumen of the ER to the cytosol.
T9 1527-1691 Sentence denotes Further, we found that the variations in the structure of the oligosaccharide chain on the glycopeptide did not cause differences in the export of the glycopeptide.
T10 1692-1821 Sentence denotes This finding suggests that the mechanism for the export of small glycopeptides may differ from that of misfolded (glyco)proteins.
T1 0-156 Sentence denotes In yeast the export of small glycopeptides from the endoplasmic reticulum into the cytosol is not affected by the structure of their oligosaccharide chains.
T2 157-368 Sentence denotes A "quality control" system associated with the endoplasmic reticulum (ER) that discriminates between misfolded proteins and correctly folded proteins is present in a variety of eukaryotic cells, including yeast.
T3 369-539 Sentence denotes Recently, it has been shown that misfolded proteins that are N -glycosylated in the lumen of the ER are transported out of the ER, de-N-glycosylated by a soluble peptide:
T4 540-603 Sentence denotes N -glycanase (PNGase) and degraded by action of the proteasome.
T5 604-827 Sentence denotes It also has been shown that small N -glycosylatable peptides follow a fate similar to that of misfolded proteins, i.e., glycosylation in the lumen of the ER, transport out of the ER, and de- N -glycosylation in the cytosol.
T6 828-971 Sentence denotes These processes of retrograde glycopeptide transport and de- N -glycosylation have been observed in mammalian cells, as well as in yeast cells.
T7 972-1086 Sentence denotes However, little is known about the mechanism involved in the movement of glycopeptides from the ER to the cytosol.
T8 1087-1297 Sentence denotes Here we report a simple method for assaying N -glycosylation/de- N -glycosylation by simple paper chromatographic and electrophoretic techniques using an N -glycosylatable(3)H-labeled tripeptide as a substrate.
T9 1298-1526 Sentence denotes With this method, we confirmed the cytosolic localization of the de- N -glycosylated peptide, which supports the idea that de- N -glycosylation occurs after the export of the glycopeptide from the lumen of the ER to the cytosol.
T10 1527-1691 Sentence denotes Further, we found that the variations in the structure of the oligosaccharide chain on the glycopeptide did not cause differences in the export of the glycopeptide.
T11 1692-1821 Sentence denotes This finding suggests that the mechanism for the export of small glycopeptides may differ from that of misfolded (glyco)proteins.

GO-BP

Id Subject Object Predicate Lexical cue
T1 52-90 http://purl.obolibrary.org/obo/GO_0046967 denotes endoplasmic reticulum into the cytosol
T2 52-90 http://purl.obolibrary.org/obo/GO_1903513 denotes endoplasmic reticulum into the cytosol
T3 291-306 http://purl.obolibrary.org/obo/GO_0006457 denotes folded proteins
T4 433-445 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylated
T5 505-517 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylated
T6 724-737 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T7 798-811 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T8 892-905 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T9 1134-1147 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T10 1155-1168 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T11 1428-1441 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T12 473-484 http://purl.obolibrary.org/obo/GO_0006810 denotes transported
T13 762-771 http://purl.obolibrary.org/obo/GO_0006810 denotes transport
T14 871-880 http://purl.obolibrary.org/obo/GO_0006810 denotes transport
T15 554-560 http://purl.obolibrary.org/obo/GO_0000224 denotes PNGase
T16 566-574 http://purl.obolibrary.org/obo/GO_0009056 denotes degraded
T17 1343-1355 http://purl.obolibrary.org/obo/GO_0051179 denotes localization

GO-CC

Id Subject Object Predicate Lexical cue
T1 52-73 http://purl.obolibrary.org/obo/GO_0005783 denotes endoplasmic reticulum
T2 204-225 http://purl.obolibrary.org/obo/GO_0005783 denotes endoplasmic reticulum
T3 83-90 http://purl.obolibrary.org/obo/GO_0005829 denotes cytosol
T4 819-826 http://purl.obolibrary.org/obo/GO_0005829 denotes cytosol
T5 1078-1085 http://purl.obolibrary.org/obo/GO_0005829 denotes cytosol
T6 1333-1342 http://purl.obolibrary.org/obo/GO_0005829 denotes cytosolic
T7 227-229 http://purl.obolibrary.org/obo/GO_0005783 denotes ER
T8 466-468 http://purl.obolibrary.org/obo/GO_0005783 denotes ER
T9 496-498 http://purl.obolibrary.org/obo/GO_0005783 denotes ER
T10 758-760 http://purl.obolibrary.org/obo/GO_0005783 denotes ER
T11 783-785 http://purl.obolibrary.org/obo/GO_0005783 denotes ER
T12 1068-1070 http://purl.obolibrary.org/obo/GO_0005783 denotes ER
T13 1508-1510 http://purl.obolibrary.org/obo/GO_0005783 denotes ER
T14 345-350 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15 938-943 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T16 965-970 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T17 453-468 http://purl.obolibrary.org/obo/GO_0005788 denotes lumen of the ER
T18 745-760 http://purl.obolibrary.org/obo/GO_0005788 denotes lumen of the ER
T19 1495-1510 http://purl.obolibrary.org/obo/GO_0005788 denotes lumen of the ER
T20 592-602 http://purl.obolibrary.org/obo/GO_0000502 denotes proteasome

EDAM-topics

Id Subject Object Predicate Lexical cue
T1 3-8 http://edamontology.org/topic_0782 denotes yeast
T2 3-8 http://edamontology.org/topic_2817 denotes yeast
T3 52-73 http://edamontology.org/topic_0616 denotes endoplasmic reticulum
T4 204-225 http://edamontology.org/topic_0616 denotes endoplasmic reticulum
T5 268-276 http://edamontology.org/topic_0078 denotes proteins
T6 298-306 http://edamontology.org/topic_0078 denotes proteins
T7 334-344 http://edamontology.org/topic_2818 denotes eukaryotic
T8 362-367 http://edamontology.org/topic_0782 denotes yeast
T9 362-367 http://edamontology.org/topic_2817 denotes yeast
T10 412-420 http://edamontology.org/topic_0078 denotes proteins
T11 531-538 http://edamontology.org/topic_0154 denotes peptide
T12 656-664 http://edamontology.org/topic_0154 denotes peptides
T13 708-716 http://edamontology.org/topic_0078 denotes proteins
T14 959-964 http://edamontology.org/topic_0782 denotes yeast
T15 959-964 http://edamontology.org/topic_2817 denotes yeast
T16 1383-1390 http://edamontology.org/topic_0154 denotes peptide
T17 1812-1820 http://edamontology.org/topic_0078 denotes proteins

EDAM-DFO

Id Subject Object Predicate Lexical cue
T1 114-123 http://edamontology.org/data_0883 denotes structure
T2 160-175 http://edamontology.org/operation_2428 denotes quality control
T3 268-276 http://edamontology.org/data_1467 denotes proteins
T4 268-276 http://edamontology.org/format_1208 denotes proteins
T5 298-306 http://edamontology.org/data_1467 denotes proteins
T6 298-306 http://edamontology.org/format_1208 denotes proteins
T7 412-420 http://edamontology.org/data_1467 denotes proteins
T8 412-420 http://edamontology.org/format_1208 denotes proteins
T9 531-538 http://edamontology.org/data_2906 denotes peptide
T10 656-664 http://edamontology.org/data_2906 denotes peptides
T11 708-716 http://edamontology.org/format_1208 denotes proteins
T12 708-716 http://edamontology.org/data_1467 denotes proteins
T13 834-843 http://edamontology.org/operation_2409 denotes processes
T14 834-843 http://edamontology.org/operation_0004 denotes processes
T15 1095-1101 http://edamontology.org/data_2048 denotes report
T16 1185-1204 http://edamontology.org/operation_3628 denotes chromatographic and
T17 1383-1390 http://edamontology.org/data_2906 denotes peptide
T18 1572-1581 http://edamontology.org/data_0883 denotes structure
T19 1812-1820 http://edamontology.org/data_1467 denotes proteins
T20 1812-1820 http://edamontology.org/format_1208 denotes proteins

NGLY1-deficiency

Id Subject Object Predicate Lexical cue
PD-NGLY1-deficiency-B_T1 540-552 hgnc:17646 denotes N -glycanase
PD-NGLY1-deficiency-B_T2 554-560 hgnc:17646 denotes PNGase

GlycoBiology-Epitope

Id Subject Object Predicate Lexical cue
PD-GlycoEpitope-B_T1 1263-1270 id denotes labeled

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 1411-1415 OrganismTaxon denotes idea 76236

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 64-73 Body_part denotes reticulum http://purl.obolibrary.org/obo/UBERON_0007361
T2 83-90 Body_part denotes cytosol http://purl.obolibrary.org/obo/GO_0005829
T3 216-225 Body_part denotes reticulum http://purl.obolibrary.org/obo/UBERON_0007361
T4 334-350 Body_part denotes eukaryotic cells http://purl.obolibrary.org/obo/CL_0000255
T5 453-458 Body_part denotes lumen http://purl.obolibrary.org/obo/UBERON_0000464
T6 745-750 Body_part denotes lumen http://purl.obolibrary.org/obo/UBERON_0000464
T7 819-826 Body_part denotes cytosol http://purl.obolibrary.org/obo/GO_0005829
T8 1078-1085 Body_part denotes cytosol http://purl.obolibrary.org/obo/GO_0005829
T9 1495-1500 Body_part denotes lumen http://purl.obolibrary.org/obo/UBERON_0000464
T10 1518-1525 Body_part denotes cytosol http://purl.obolibrary.org/obo/GO_0005829

Glycosmos15-CL

Id Subject Object Predicate Lexical cue cl_id
T1 334-350 Cell denotes eukaryotic cells http://purl.obolibrary.org/obo/CL:0000255