PubMed:10521438
Annnotations
GlyCosmos15-Species
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| 11 | 124-129 | Species | denotes | mouse | 10090 |
GGDB-2020
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 55-66 | https://acgg.asia/db/ggdb/info/gg060 | denotes | ST6GalNAc V |
| T2 | 231-242 | https://acgg.asia/db/ggdb/info/gg060 | denotes | ST6GalNAc V |
| T3 | 347-358 | https://acgg.asia/db/ggdb/info/gg060 | denotes | ST6GalNAc V |
| T4 | 628-641 | https://acgg.asia/db/ggdb/info/gg058 | denotes | ST6GalNAc III |
| T5 | 860-871 | https://acgg.asia/db/ggdb/info/gg060 | denotes | ST6GalNAc V |
ggdb-test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 55-66 | https://acgg.asia/db/ggdb/info/gg060 | denotes | ST6GalNAc V |
| T2 | 231-242 | https://acgg.asia/db/ggdb/info/gg060 | denotes | ST6GalNAc V |
| T3 | 347-358 | https://acgg.asia/db/ggdb/info/gg060 | denotes | ST6GalNAc V |
| T4 | 628-641 | https://acgg.asia/db/ggdb/info/gg058 | denotes | ST6GalNAc III |
| T5 | 860-871 | https://acgg.asia/db/ggdb/info/gg060 | denotes | ST6GalNAc V |
GlyCosmos6-Glycan-Motif-Image
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 971-975 | Glycan_Motif | denotes | GM1b | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G03277YI |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-101 | Sentence | denotes | Molecular cloning of brain-specific GD1alpha synthase (ST6GalNAc V) containing CAG/Glutamine repeats. |
| T2 | 102-304 | Sentence | denotes | A novel member of the mouse CMP-NeuAc: beta-N-acetylgalactosaminide alpha2,6-sialyltransferase (ST6GalNAc) subfamily, designated ST6GalNAc V, was identified by BLAST analysis of expressed sequence tags. |
| T3 | 305-552 | Sentence | denotes | The sequence of the longest cDNA clone of ST6GalNAc V encoded a type II membrane protein with 8 amino acids comprising the cytoplasmic domain, 21 amino acids comprising the transmembrane region, and 306 amino acids comprising the catalytic domain. |
| T4 | 553-734 | Sentence | denotes | The predicted amino acid sequence showed homology to the previously cloned ST6GalNAc III and IV, with common amino acid sequences in sialyl motifs L and S among these three enzymes. |
| T5 | 735-784 | Sentence | denotes | Eleven CAG repeats were found in the stem region. |
| T6 | 785-1006 | Sentence | denotes | A fusion protein with protein A and extracts from L cells transfected with ST6GalNAc V in a expression vector showed enzyme activity of alpha2,6-sialyltransferase almost exclusively for GM1b, but not toward glycoproteins. |
| T7 | 1007-1111 | Sentence | denotes | Sialidase treatment and thin layer chromatography immunostaining revealed that the product was GD1alpha. |
| T8 | 1112-1219 | Sentence | denotes | Northern blotting revealed that three transcripts of the gene were expressed specifically in brain tissues. |
| T9 | 1220-1390 | Sentence | denotes | It is concluded that this enzyme is involved in the synthesis of GD1alpha in the nervous tissues, and the CAG repeats may have implications in neurodegenerative diseases. |
GlyCosmos6-Glycan-Motif-Structure
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 971-975 | https://glytoucan.org/Structures/Glycans/G03277YI | denotes | GM1b |
Glycosmos6-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 971-975 | http://www.glycoepitope.jp/epitopes/EP0048 | denotes | GM1b |
Glycosmos6-MAT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 21-26 | http://purl.obolibrary.org/obo/MAT_0000098 | denotes | brain |
| T2 | 772-776 | http://purl.obolibrary.org/obo/MAT_0000239 | denotes | stem |
| T3 | 1205-1210 | http://purl.obolibrary.org/obo/MAT_0000098 | denotes | brain |
glycogenes
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-GlycoGenes20190927-B_T1 | 55-66 | https://acgg.asia/db/ggdb/info/gg060 | denotes | ST6GalNAc V |
| PD-GlycoGenes20190927-B_T2 | 220-230 | url | denotes | designated |
| PD-GlycoGenes20190927-B_T3 | 231-242 | https://acgg.asia/db/ggdb/info/gg060 | denotes | ST6GalNAc V |
| PD-GlycoGenes20190927-B_T4 | 347-358 | https://acgg.asia/db/ggdb/info/gg060 | denotes | ST6GalNAc V |
| PD-GlycoGenes20190927-B_T5 | 374-376 | https://acgg.asia/db/ggdb/info/gg111 | denotes | II |
| PD-GlycoGenes20190927-B_T6 | 628-641 | https://acgg.asia/db/ggdb/info/gg058 | denotes | ST6GalNAc III |
| PD-GlycoGenes20190927-B_T7 | 860-871 | https://acgg.asia/db/ggdb/info/gg060 | denotes | ST6GalNAc V |
GlyCosmos15-Glycan
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 36-44 | Glycan | denotes | GD1alpha | https://api.glycosmos.org/wurcs2image/latest/png/binary/G07394RV |
| T2 | 134-139 | Glycan | denotes | NeuAc | https://api.glycosmos.org/wurcs2image/latest/png/binary/G76685HR |
| T3 | 971-975 | Glycan | denotes | GM1b | https://api.glycosmos.org/wurcs2image/latest/png/binary/G03277YI |
| T4 | 1102-1110 | Glycan | denotes | GD1alpha | https://api.glycosmos.org/wurcs2image/latest/png/binary/G07394RV |
| T5 | 1285-1293 | Glycan | denotes | GD1alpha | https://api.glycosmos.org/wurcs2image/latest/png/binary/G07394RV |
mondo_disease
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 1363-1389 | Disease | denotes | neurodegenerative diseases | http://purl.obolibrary.org/obo/MONDO_0005559 |
Anatomy-MAT
| Id | Subject | Object | Predicate | Lexical cue | mat_id |
|---|---|---|---|---|---|
| T1 | 21-26 | Body_part | denotes | brain | http://purl.obolibrary.org/obo/MAT_0000098 |
| T2 | 772-776 | Body_part | denotes | stem | http://purl.obolibrary.org/obo/MAT_0000239 |
| T3 | 1205-1210 | Body_part | denotes | brain | http://purl.obolibrary.org/obo/MAT_0000098 |
HP-phenotype
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 1363-1389 | Phenotype | denotes | neurodegenerative diseases | HP:0002180 |
Glycan-GlyCosmos
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 36-44 | Glycan | denotes | GD1alpha | https://api.glycosmos.org/wurcs2image/latest/png/binary/G07394RV |
| T2 | 134-139 | Glycan | denotes | NeuAc | https://api.glycosmos.org/wurcs2image/latest/png/binary/G76685HR |
| T3 | 971-975 | Glycan | denotes | GM1b | https://api.glycosmos.org/wurcs2image/latest/png/binary/G03277YI |
| T4 | 1102-1110 | Glycan | denotes | GD1alpha | https://api.glycosmos.org/wurcs2image/latest/png/binary/G07394RV |
| T5 | 1285-1293 | Glycan | denotes | GD1alpha | https://api.glycosmos.org/wurcs2image/latest/png/binary/G07394RV |
GlyCosmos15-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 1363-1389 | Phenotype | denotes | neurodegenerative diseases | HP:0002180 |
GlyCosmos15-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 21-26 | Body_part | denotes | brain | http://purl.obolibrary.org/obo/UBERON_0000955|http://purl.obolibrary.org/obo/UBERON_6110636 |
| T3 | 377-385 | Body_part | denotes | membrane | http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158 |
| T6 | 428-439 | Body_part | denotes | cytoplasmic | http://purl.obolibrary.org/obo/GO_0005737 |
| T7 | 478-491 | Body_part | denotes | transmembrane | http://purl.obolibrary.org/obo/GO_0016020 |
| T8 | 1036-1041 | Body_part | denotes | layer | http://purl.obolibrary.org/obo/UBERON_0000119|http://purl.obolibrary.org/obo/UBERON_0022303 |
| T10 | 1205-1210 | Body_part | denotes | brain | http://purl.obolibrary.org/obo/UBERON_0000955|http://purl.obolibrary.org/obo/UBERON_6110636 |
| T12 | 1301-1316 | Body_part | denotes | nervous tissues | http://purl.obolibrary.org/obo/UBERON_0003714 |
GlyCosmos15-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 1363-1389 | Disease | denotes | neurodegenerative diseases | MONDO:0005559 |
GlyCosmos15-Sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-101 | Sentence | denotes | Molecular cloning of brain-specific GD1alpha synthase (ST6GalNAc V) containing CAG/Glutamine repeats. |
| T2 | 102-304 | Sentence | denotes | A novel member of the mouse CMP-NeuAc: beta-N-acetylgalactosaminide alpha2,6-sialyltransferase (ST6GalNAc) subfamily, designated ST6GalNAc V, was identified by BLAST analysis of expressed sequence tags. |
| T3 | 305-552 | Sentence | denotes | The sequence of the longest cDNA clone of ST6GalNAc V encoded a type II membrane protein with 8 amino acids comprising the cytoplasmic domain, 21 amino acids comprising the transmembrane region, and 306 amino acids comprising the catalytic domain. |
| T4 | 553-734 | Sentence | denotes | The predicted amino acid sequence showed homology to the previously cloned ST6GalNAc III and IV, with common amino acid sequences in sialyl motifs L and S among these three enzymes. |
| T5 | 735-784 | Sentence | denotes | Eleven CAG repeats were found in the stem region. |
| T6 | 785-1006 | Sentence | denotes | A fusion protein with protein A and extracts from L cells transfected with ST6GalNAc V in a expression vector showed enzyme activity of alpha2,6-sialyltransferase almost exclusively for GM1b, but not toward glycoproteins. |
| T7 | 1007-1111 | Sentence | denotes | Sialidase treatment and thin layer chromatography immunostaining revealed that the product was GD1alpha. |
| T8 | 1112-1219 | Sentence | denotes | Northern blotting revealed that three transcripts of the gene were expressed specifically in brain tissues. |
| T9 | 1220-1390 | Sentence | denotes | It is concluded that this enzyme is involved in the synthesis of GD1alpha in the nervous tissues, and the CAG repeats may have implications in neurodegenerative diseases. |
GlyCosmos15-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 971-975 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | GM1b | http://www.glycoepitope.jp/epitopes/EP0048 |
GlyCosmos15-FMA
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 21-26 | Body_part | denotes | brain | FMA:50801 |
| T2 | 428-439 | Body_part | denotes | cytoplasmic | FMA:66835 |
| T3 | 1205-1210 | Body_part | denotes | brain | FMA:50801 |
| T4 | 1211-1218 | Body_part | denotes | tissues | FMA:9637 |
| T5 | 1301-1316 | Body_part | denotes | nervous tissues | FMA:9642 |
GlyCosmos15-MAT
| Id | Subject | Object | Predicate | Lexical cue | mat_id |
|---|---|---|---|---|---|
| T1 | 21-26 | Body_part | denotes | brain | http://purl.obolibrary.org/obo/MAT_0000098 |
| T2 | 772-776 | Body_part | denotes | stem | http://purl.obolibrary.org/obo/MAT_0000239 |
| T3 | 1205-1210 | Body_part | denotes | brain | http://purl.obolibrary.org/obo/MAT_0000098 |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 124-129 | OrganismTaxon | denotes | mouse | 10088|10090 |
GlyCosmos-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 971-975 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | GM1b | http://www.glycoepitope.jp/epitopes/EP0048 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 21-26 | Body_part | denotes | brain | http://purl.obolibrary.org/obo/UBERON_0000955|http://purl.obolibrary.org/obo/UBERON_6110636 |
| T3 | 377-385 | Body_part | denotes | membrane | http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158 |
| T6 | 428-439 | Body_part | denotes | cytoplasmic | http://purl.obolibrary.org/obo/GO_0005737 |
| T7 | 478-491 | Body_part | denotes | transmembrane | http://purl.obolibrary.org/obo/GO_0016020 |
| T8 | 1036-1041 | Body_part | denotes | layer | http://purl.obolibrary.org/obo/UBERON_0000119|http://purl.obolibrary.org/obo/UBERON_0022303 |
| T10 | 1205-1210 | Body_part | denotes | brain | http://purl.obolibrary.org/obo/UBERON_0000955|http://purl.obolibrary.org/obo/UBERON_6110636 |
| T12 | 1301-1316 | Body_part | denotes | nervous tissues | http://purl.obolibrary.org/obo/UBERON_0003714 |