PubMed:10515047
Annnotations
GlyCosmos6-Glycan-Motif-Image
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 51-72 | Glycan_Motif | denotes | chondroitin 4-sulfate | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G19059PI |
| T2 | 51-62 | Glycan_Motif | denotes | chondroitin | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT |
| T3 | 151-172 | Glycan_Motif | denotes | chondroitin 4-sulfate | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G19059PI |
| T4 | 151-162 | Glycan_Motif | denotes | chondroitin | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT |
| T5 | 174-177 | Glycan_Motif | denotes | CS4 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G19059PI |
| T6 | 926-929 | Glycan_Motif | denotes | CS4 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G19059PI |
| T7 | 955-958 | Glycan_Motif | denotes | CS4 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G19059PI |
| T8 | 1064-1067 | Glycan_Motif | denotes | CS4 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G19059PI |
| T9 | 1143-1146 | Glycan_Motif | denotes | CS4 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G19059PI |
| T10 | 1231-1234 | Glycan_Motif | denotes | CS4 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G19059PI |
| T11 | 1329-1340 | Glycan_Motif | denotes | chondroitin | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G43702JT |
| T12 | 1584-1587 | Glycan_Motif | denotes | CS4 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G19059PI |
GlyCosmos6-Glycan-Motif-Structure
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 51-72 | https://glytoucan.org/Structures/Glycans/G19059PI | denotes | chondroitin 4-sulfate |
| T2 | 51-62 | https://glytoucan.org/Structures/Glycans/G43702JT | denotes | chondroitin |
| T3 | 151-172 | https://glytoucan.org/Structures/Glycans/G19059PI | denotes | chondroitin 4-sulfate |
| T4 | 151-162 | https://glytoucan.org/Structures/Glycans/G43702JT | denotes | chondroitin |
| T5 | 1329-1340 | https://glytoucan.org/Structures/Glycans/G43702JT | denotes | chondroitin |
Glycosmos6-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 51-72 | http://www.glycoepitope.jp/epitopes/EP0082 | denotes | chondroitin 4-sulfate |
| T2 | 51-62 | http://www.glycoepitope.jp/epitopes/EP0081 | denotes | chondroitin |
| T3 | 151-172 | http://www.glycoepitope.jp/epitopes/EP0082 | denotes | chondroitin 4-sulfate |
| T4 | 151-162 | http://www.glycoepitope.jp/epitopes/EP0081 | denotes | chondroitin |
| T5 | 174-177 | http://www.glycoepitope.jp/epitopes/EP0082 | denotes | CS4 |
| T6 | 926-929 | http://www.glycoepitope.jp/epitopes/EP0082 | denotes | CS4 |
| T7 | 955-958 | http://www.glycoepitope.jp/epitopes/EP0082 | denotes | CS4 |
| T8 | 1064-1067 | http://www.glycoepitope.jp/epitopes/EP0082 | denotes | CS4 |
| T9 | 1143-1146 | http://www.glycoepitope.jp/epitopes/EP0082 | denotes | CS4 |
| T10 | 1231-1234 | http://www.glycoepitope.jp/epitopes/EP0082 | denotes | CS4 |
| T11 | 1329-1340 | http://www.glycoepitope.jp/epitopes/EP0081 | denotes | chondroitin |
| T12 | 1584-1587 | http://www.glycoepitope.jp/epitopes/EP0082 | denotes | CS4 |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| TextSentencer_T1 | 0-82 | Sentence | denotes | Molecular dynamics of a tetrasaccharide subunit of chondroitin 4-sulfate in water. |
| TextSentencer_T2 | 83-253 | Sentence | denotes | Molecular dynamics (MD) simulations on a tetrasaccharide subunit of chondroitin 4-sulfate (CS4) in aqueous solution were carried out to study its interactions with water. |
| TextSentencer_T3 | 254-409 | Sentence | denotes | Pair distribution functions and diffusion coefficients were calculated from a 4 ns trajectory and the hydration of different molecular groups was analysed. |
| TextSentencer_T4 | 410-690 | Sentence | denotes | The average values of the interglycosidic torsion angles found in the simulations are phi 13 = -10 degrees, psi 13 = -85 degrees and phi 13 = 80 degrees, psi 13 = 90 degrees for the beta-(1-->3) linkage, and phi 14 = -10 degrees, psi 14 = -70 degrees for the beta-(1-->4) linkage. |
| TextSentencer_T5 | 691-753 | Sentence | denotes | Hydrophobic patches formed by sugar ring CH groups were found. |
| TextSentencer_T6 | 754-979 | Sentence | denotes | The diffusion coefficients of the water molecules vary from 1.4 x 10(-9) to 2.3 x 10(-9) m2 s-1 depending on the distances between the water molecules and the atoms of the CS4 molecule and the type of CS4 atoms, respectively. |
| TextSentencer_T7 | 980-1147 | Sentence | denotes | Reorientation correlation times of the water molecules in the vicinity of different CS4 atoms were estimated to be about 1 ps at a polymer concentration of 4 wt.% CS4. |
| TextSentencer_T8 | 1148-1398 | Sentence | denotes | The number of hydrogen bonds between the water molecules and the acceptor atoms of CS4 was determined to be about 20 per disaccharide unit, indicating a higher hydration ability of chondroitin sulfate in comparison with non-sulfated oligosaccharides. |
| TextSentencer_T9 | 1399-1597 | Sentence | denotes | Substructures, where water molecules are involved in hydrogen bonds to different sugar rings, were found, which may be important for the stabilisation of the secondary structure of the CS4 molecule. |
| T1 | 0-82 | Sentence | denotes | Molecular dynamics of a tetrasaccharide subunit of chondroitin 4-sulfate in water. |
| T2 | 83-253 | Sentence | denotes | Molecular dynamics (MD) simulations on a tetrasaccharide subunit of chondroitin 4-sulfate (CS4) in aqueous solution were carried out to study its interactions with water. |
| T3 | 254-409 | Sentence | denotes | Pair distribution functions and diffusion coefficients were calculated from a 4 ns trajectory and the hydration of different molecular groups was analysed. |
| T4 | 410-690 | Sentence | denotes | The average values of the interglycosidic torsion angles found in the simulations are phi 13 = -10 degrees, psi 13 = -85 degrees and phi 13 = 80 degrees, psi 13 = 90 degrees for the beta-(1-->3) linkage, and phi 14 = -10 degrees, psi 14 = -70 degrees for the beta-(1-->4) linkage. |
| T5 | 691-753 | Sentence | denotes | Hydrophobic patches formed by sugar ring CH groups were found. |
| T6 | 754-979 | Sentence | denotes | The diffusion coefficients of the water molecules vary from 1.4 x 10(-9) to 2.3 x 10(-9) m2 s-1 depending on the distances between the water molecules and the atoms of the CS4 molecule and the type of CS4 atoms, respectively. |
| T7 | 980-1147 | Sentence | denotes | Reorientation correlation times of the water molecules in the vicinity of different CS4 atoms were estimated to be about 1 ps at a polymer concentration of 4 wt.% CS4. |
| T8 | 1148-1398 | Sentence | denotes | The number of hydrogen bonds between the water molecules and the acceptor atoms of CS4 was determined to be about 20 per disaccharide unit, indicating a higher hydration ability of chondroitin sulfate in comparison with non-sulfated oligosaccharides. |
| T9 | 1399-1597 | Sentence | denotes | Substructures, where water molecules are involved in hydrogen bonds to different sugar rings, were found, which may be important for the stabilisation of the secondary structure of the CS4 molecule. |
Glycan-GlyCosmos
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 51-72 | Glycan | denotes | chondroitin 4-sulfate | https://api.glycosmos.org/wurcs2image/latest/png/binary/G19059PI |
| T2 | 151-172 | Glycan | denotes | chondroitin 4-sulfate | https://api.glycosmos.org/wurcs2image/latest/png/binary/G19059PI |
| T3 | 174-177 | Glycan | denotes | CS4 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G19059PI |
| T4 | 926-929 | Glycan | denotes | CS4 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G19059PI |
| T5 | 955-958 | Glycan | denotes | CS4 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G19059PI |
| T6 | 1064-1067 | Glycan | denotes | CS4 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G19059PI |
| T7 | 1143-1146 | Glycan | denotes | CS4 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G19059PI |
| T8 | 1231-1234 | Glycan | denotes | CS4 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G19059PI |
| T9 | 1329-1340 | Glycan | denotes | chondroitin | https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT |
| T10 | 1584-1587 | Glycan | denotes | CS4 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G19059PI |
GlyCosmos-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 51-72 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | chondroitin 4-sulfate | http://www.glycoepitope.jp/epitopes/EP0082 |
| T2 | 151-172 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | chondroitin 4-sulfate | http://www.glycoepitope.jp/epitopes/EP0082 |
| T3 | 174-177 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | CS4 | http://www.glycoepitope.jp/epitopes/EP0082 |
| T4 | 926-929 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | CS4 | http://www.glycoepitope.jp/epitopes/EP0082 |
| T5 | 955-958 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | CS4 | http://www.glycoepitope.jp/epitopes/EP0082 |
| T6 | 1064-1067 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | CS4 | http://www.glycoepitope.jp/epitopes/EP0082 |
| T7 | 1143-1146 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | CS4 | http://www.glycoepitope.jp/epitopes/EP0082 |
| T8 | 1231-1234 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | CS4 | http://www.glycoepitope.jp/epitopes/EP0082 |
| T9 | 1329-1340 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | chondroitin | http://www.glycoepitope.jp/epitopes/EP0081 |
| T10 | 1584-1587 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | CS4 | http://www.glycoepitope.jp/epitopes/EP0082 |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| TextSentencer_T1 | 0-82 | Sentence | denotes | Molecular dynamics of a tetrasaccharide subunit of chondroitin 4-sulfate in water. |
| TextSentencer_T2 | 83-253 | Sentence | denotes | Molecular dynamics (MD) simulations on a tetrasaccharide subunit of chondroitin 4-sulfate (CS4) in aqueous solution were carried out to study its interactions with water. |
| TextSentencer_T3 | 254-409 | Sentence | denotes | Pair distribution functions and diffusion coefficients were calculated from a 4 ns trajectory and the hydration of different molecular groups was analysed. |
| TextSentencer_T4 | 410-690 | Sentence | denotes | The average values of the interglycosidic torsion angles found in the simulations are phi 13 = -10 degrees, psi 13 = -85 degrees and phi 13 = 80 degrees, psi 13 = 90 degrees for the beta-(1-->3) linkage, and phi 14 = -10 degrees, psi 14 = -70 degrees for the beta-(1-->4) linkage. |
| TextSentencer_T5 | 691-753 | Sentence | denotes | Hydrophobic patches formed by sugar ring CH groups were found. |
| TextSentencer_T6 | 754-979 | Sentence | denotes | The diffusion coefficients of the water molecules vary from 1.4 x 10(-9) to 2.3 x 10(-9) m2 s-1 depending on the distances between the water molecules and the atoms of the CS4 molecule and the type of CS4 atoms, respectively. |
| TextSentencer_T7 | 980-1147 | Sentence | denotes | Reorientation correlation times of the water molecules in the vicinity of different CS4 atoms were estimated to be about 1 ps at a polymer concentration of 4 wt.% CS4. |
| TextSentencer_T8 | 1148-1398 | Sentence | denotes | The number of hydrogen bonds between the water molecules and the acceptor atoms of CS4 was determined to be about 20 per disaccharide unit, indicating a higher hydration ability of chondroitin sulfate in comparison with non-sulfated oligosaccharides. |
| TextSentencer_T9 | 1399-1597 | Sentence | denotes | Substructures, where water molecules are involved in hydrogen bonds to different sugar rings, were found, which may be important for the stabilisation of the secondary structure of the CS4 molecule. |
| T1 | 0-82 | Sentence | denotes | Molecular dynamics of a tetrasaccharide subunit of chondroitin 4-sulfate in water. |
| T2 | 83-253 | Sentence | denotes | Molecular dynamics (MD) simulations on a tetrasaccharide subunit of chondroitin 4-sulfate (CS4) in aqueous solution were carried out to study its interactions with water. |
| T3 | 254-409 | Sentence | denotes | Pair distribution functions and diffusion coefficients were calculated from a 4 ns trajectory and the hydration of different molecular groups was analysed. |
| T4 | 410-690 | Sentence | denotes | The average values of the interglycosidic torsion angles found in the simulations are phi 13 = -10 degrees, psi 13 = -85 degrees and phi 13 = 80 degrees, psi 13 = 90 degrees for the beta-(1-->3) linkage, and phi 14 = -10 degrees, psi 14 = -70 degrees for the beta-(1-->4) linkage. |
| T5 | 691-753 | Sentence | denotes | Hydrophobic patches formed by sugar ring CH groups were found. |
| T6 | 754-979 | Sentence | denotes | The diffusion coefficients of the water molecules vary from 1.4 x 10(-9) to 2.3 x 10(-9) m2 s-1 depending on the distances between the water molecules and the atoms of the CS4 molecule and the type of CS4 atoms, respectively. |
| T7 | 980-1147 | Sentence | denotes | Reorientation correlation times of the water molecules in the vicinity of different CS4 atoms were estimated to be about 1 ps at a polymer concentration of 4 wt.% CS4. |
| T8 | 1148-1398 | Sentence | denotes | The number of hydrogen bonds between the water molecules and the acceptor atoms of CS4 was determined to be about 20 per disaccharide unit, indicating a higher hydration ability of chondroitin sulfate in comparison with non-sulfated oligosaccharides. |
| T9 | 1399-1597 | Sentence | denotes | Substructures, where water molecules are involved in hydrogen bonds to different sugar rings, were found, which may be important for the stabilisation of the secondary structure of the CS4 molecule. |
GlyCosmos15-Sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-82 | Sentence | denotes | Molecular dynamics of a tetrasaccharide subunit of chondroitin 4-sulfate in water. |
| T2 | 83-253 | Sentence | denotes | Molecular dynamics (MD) simulations on a tetrasaccharide subunit of chondroitin 4-sulfate (CS4) in aqueous solution were carried out to study its interactions with water. |
| T3 | 254-409 | Sentence | denotes | Pair distribution functions and diffusion coefficients were calculated from a 4 ns trajectory and the hydration of different molecular groups was analysed. |
| T4 | 410-690 | Sentence | denotes | The average values of the interglycosidic torsion angles found in the simulations are phi 13 = -10 degrees, psi 13 = -85 degrees and phi 13 = 80 degrees, psi 13 = 90 degrees for the beta-(1-->3) linkage, and phi 14 = -10 degrees, psi 14 = -70 degrees for the beta-(1-->4) linkage. |
| T5 | 691-753 | Sentence | denotes | Hydrophobic patches formed by sugar ring CH groups were found. |
| T6 | 754-979 | Sentence | denotes | The diffusion coefficients of the water molecules vary from 1.4 x 10(-9) to 2.3 x 10(-9) m2 s-1 depending on the distances between the water molecules and the atoms of the CS4 molecule and the type of CS4 atoms, respectively. |
| T7 | 980-1147 | Sentence | denotes | Reorientation correlation times of the water molecules in the vicinity of different CS4 atoms were estimated to be about 1 ps at a polymer concentration of 4 wt.% CS4. |
| T8 | 1148-1398 | Sentence | denotes | The number of hydrogen bonds between the water molecules and the acceptor atoms of CS4 was determined to be about 20 per disaccharide unit, indicating a higher hydration ability of chondroitin sulfate in comparison with non-sulfated oligosaccharides. |
| T9 | 1399-1597 | Sentence | denotes | Substructures, where water molecules are involved in hydrogen bonds to different sugar rings, were found, which may be important for the stabilisation of the secondary structure of the CS4 molecule. |
GlyCosmos15-Glycan
| Id | Subject | Object | Predicate | Lexical cue | glycosmos_id | image |
|---|---|---|---|---|---|---|
| T1 | 51-72 | Glycan | denotes | chondroitin 4-sulfate | https://glycosmos.org/glycans/show/G19059PI | https://api.glycosmos.org/wurcs2image/latest/png/binary/G19059PI |
| T2 | 151-172 | Glycan | denotes | chondroitin 4-sulfate | https://glycosmos.org/glycans/show/G19059PI | https://api.glycosmos.org/wurcs2image/latest/png/binary/G19059PI |
| T3 | 174-177 | Glycan | denotes | CS4 | https://glycosmos.org/glycans/show/G19059PI | https://api.glycosmos.org/wurcs2image/latest/png/binary/G19059PI |
| T4 | 926-929 | Glycan | denotes | CS4 | https://glycosmos.org/glycans/show/G19059PI | https://api.glycosmos.org/wurcs2image/latest/png/binary/G19059PI |
| T5 | 955-958 | Glycan | denotes | CS4 | https://glycosmos.org/glycans/show/G19059PI | https://api.glycosmos.org/wurcs2image/latest/png/binary/G19059PI |
| T6 | 1064-1067 | Glycan | denotes | CS4 | https://glycosmos.org/glycans/show/G19059PI | https://api.glycosmos.org/wurcs2image/latest/png/binary/G19059PI |
| T7 | 1143-1146 | Glycan | denotes | CS4 | https://glycosmos.org/glycans/show/G19059PI | https://api.glycosmos.org/wurcs2image/latest/png/binary/G19059PI |
| T8 | 1231-1234 | Glycan | denotes | CS4 | https://glycosmos.org/glycans/show/G19059PI | https://api.glycosmos.org/wurcs2image/latest/png/binary/G19059PI |
| T9 | 1329-1340 | Glycan | denotes | chondroitin | https://glycosmos.org/glycans/show/G43702JT | https://api.glycosmos.org/wurcs2image/latest/png/binary/G43702JT |
| T10 | 1584-1587 | Glycan | denotes | CS4 | https://glycosmos.org/glycans/show/G19059PI | https://api.glycosmos.org/wurcs2image/latest/png/binary/G19059PI |
GlyCosmos15-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 51-72 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | chondroitin 4-sulfate | http://www.glycoepitope.jp/epitopes/EP0082 |
| T2 | 151-172 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | chondroitin 4-sulfate | http://www.glycoepitope.jp/epitopes/EP0082 |
| T3 | 174-177 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | CS4 | http://www.glycoepitope.jp/epitopes/EP0082 |
| T4 | 926-929 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | CS4 | http://www.glycoepitope.jp/epitopes/EP0082 |
| T5 | 955-958 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | CS4 | http://www.glycoepitope.jp/epitopes/EP0082 |
| T6 | 1064-1067 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | CS4 | http://www.glycoepitope.jp/epitopes/EP0082 |
| T7 | 1143-1146 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | CS4 | http://www.glycoepitope.jp/epitopes/EP0082 |
| T8 | 1231-1234 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | CS4 | http://www.glycoepitope.jp/epitopes/EP0082 |
| T9 | 1329-1340 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | chondroitin | http://www.glycoepitope.jp/epitopes/EP0081 |
| T10 | 1584-1587 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | CS4 | http://www.glycoepitope.jp/epitopes/EP0082 |