PubMed:10437913
Annnotations
PubmedHPO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 117-122 | HP_0002664 | denotes | Tumor |
| T2 | 151-165 | HP_0009919 | denotes | retinoblastoma |
jnlpba-st-training
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 51-56 | protein | denotes | Oct-1 |
| T2 | 91-104 | protein | denotes | interleukin-8 |
| T3 | 151-170 | DNA | denotes | retinoblastoma gene |
| T4 | 200-218 | DNA | denotes | HLA class II genes |
| T5 | 234-243 | protein | denotes | IFN-gamma |
| T6 | 288-290 | protein | denotes | Rb |
| T7 | 317-330 | DNA | denotes | class II gene |
| T8 | 379-381 | protein | denotes | Rb |
| T9 | 396-410 | DNA | denotes | class II genes |
| T10 | 454-456 | protein | denotes | Rb |
| T11 | 506-513 | DNA | denotes | HLA-DRA |
| T12 | 519-542 | DNA | denotes | prototype class II gene |
| T13 | 544-549 | protein | denotes | Oct-1 |
| T14 | 553-584 | protein | denotes | POU domain transcription factor |
| T15 | 619-626 | DNA | denotes | HLA-DRA |
| T16 | 652-670 | cell_type | denotes | Rb-defective cells |
| T17 | 672-674 | protein | denotes | Rb |
| T18 | 712-717 | protein | denotes | Oct-1 |
| T19 | 757-762 | protein | denotes | Oct-1 |
| T20 | 794-807 | protein | denotes | interleukin 8 |
| T21 | 861-866 | protein | denotes | Oct-1 |
| T22 | 895-920 | cell_line | denotes | Rb-transformed cell lines |
| T23 | 922-935 | protein | denotes | interleukin 8 |
genia-medco-coref
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| C14 | 91-115 | NP | denotes | interleukin-8 expression |
| C1 | 196-218 | NP | denotes | the HLA class II genes |
| C2 | 392-410 | NP | denotes | the class II genes |
| C7 | 454-467 | NP | denotes | Rb expression |
| C3 | 506-513 | NP | denotes | HLA-DRA |
| C4 | 515-542 | NP | denotes | the prototype class II gene |
| C5 | 544-549 | NP | denotes | Oct-1 |
| C6 | 551-584 | NP | denotes | a POU domain transcription factor |
| C12 | 652-655 | NP | denotes | Rb- |
| C8 | 672-685 | NP | denotes | Rb expression |
| C9 | 712-717 | NP | denotes | Oct-1 |
| C10 | 734-737 | NP | denotes | its |
| C11 | 757-762 | NP | denotes | Oct-1 |
| C13 | 895-898 | NP | denotes | Rb- |
| C15 | 922-946 | NP | denotes | interleukin 8 expression |
| R1 | C2 | C1 | coref-ident | the class II genes,the HLA class II genes |
| R2 | C4 | C3 | coref-appos | the prototype class II gene,HLA-DRA |
| R3 | C6 | C5 | coref-appos | a POU domain transcription factor,Oct-1 |
| R4 | C8 | C7 | coref-ident | Rb expression,Rb expression |
| R5 | C9 | C5 | coref-ident | Oct-1,Oct-1 |
| R6 | C10 | C8 | coref-pron | its,Rb expression |
| R7 | C11 | C9 | coref-ident | Oct-1,Oct-1 |
| R8 | C13 | C12 | coref-ident | Rb-,Rb- |
| R9 | C15 | C14 | coref-ident | interleukin 8 expression,interleukin-8 expression |
pubmed-sentences-benchmark
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| S1 | 0-116 | Sentence | denotes | Retinoblastoma protein expression leads to reduced Oct-1 DNA binding activity and enhances interleukin-8 expression. |
| S2 | 117-342 | Sentence | denotes | Tumor cell lines with a defective retinoblastoma gene are unable to transcribe the HLA class II genes in response to IFN-gamma treatment, and reconstitution of functional Rb rescues IFN-gamma-induced class II gene expression. |
| S3 | 343-422 | Sentence | denotes | However, the molecular mechanism of Rb rescue of the class II genes is unknown. |
| S4 | 423-543 | Sentence | denotes | We have examined the effect of Rb expression on the activation of the promoter for HLA-DRA, the prototype class II gene. |
| S5 | 544-671 | Sentence | denotes | Oct-1, a POU domain transcription factor, was identified as a repressor of HLA-DRA promoter activity in the Rb-defective cells. |
| S6 | 672-756 | Sentence | denotes | Rb expression led to phosphorylation of Oct-1, thus relieving its repressive effect. |
| S7 | 757-826 | Sentence | denotes | Oct-1 has also been shown to repress interleukin 8 promoter activity. |
| S8 | 827-977 | Sentence | denotes | Consistent with reduced levels of Oct-1 DNA binding activity in the Rb-transformed cell lines, interleukin 8 expression is higher in these cell lines. |
GENIAcorpus
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 51-56 | protein_molecule | denotes | Oct-1 |
| T2 | 91-104 | protein_molecule | denotes | interleukin-8 |
| T3 | 151-165 | other_name | denotes | retinoblastoma |
| T4 | 200-218 | DNA_family_or_group | denotes | HLA class II genes |
| T5 | 234-243 | protein_molecule | denotes | IFN-gamma |
| T6 | 288-290 | protein_molecule | denotes | Rb |
| T7 | 299-316 | other_name | denotes | IFN-gamma-induced |
| T8 | 317-330 | DNA_family_or_group | denotes | class II gene |
| T9 | 379-381 | protein_molecule | denotes | Rb |
| T10 | 396-410 | DNA_family_or_group | denotes | class II genes |
| T11 | 454-456 | protein_molecule | denotes | Rb |
| T12 | 506-513 | DNA_domain_or_region | denotes | HLA-DRA |
| T13 | 519-542 | DNA_domain_or_region | denotes | prototype class II gene |
| T14 | 544-549 | protein_molecule | denotes | Oct-1 |
| T15 | 553-584 | protein_family_or_group | denotes | POU domain transcription factor |
| T16 | 619-626 | DNA_domain_or_region | denotes | HLA-DRA |
| T17 | 652-670 | cell_type | denotes | Rb-defective cells |
| T18 | 672-674 | protein_molecule | denotes | Rb |
| T19 | 712-717 | protein_molecule | denotes | Oct-1 |
| T20 | 757-762 | protein_molecule | denotes | Oct-1 |
| T21 | 794-807 | protein_molecule | denotes | interleukin 8 |
| T22 | 861-866 | protein_molecule | denotes | Oct-1 |
| T23 | 895-920 | cell_line | denotes | Rb-transformed cell lines |
| T24 | 922-935 | protein_molecule | denotes | interleukin 8 |