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PubMed:10430922 JSONTXT

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PMID_GLOBAL

Id Subject Object Predicate Lexical cue mondo_id
T1 439-451 DiseaseOrPhenotypicFeature denotes breast tumor 0007254|0021100
T3 608-613 DiseaseOrPhenotypicFeature denotes tumor 0005070

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 259-272 HP_0003002 denotes breast tumors
T2 259-272 HP_0100013 denotes breast tumors
T3 266-272 HP_0002664 denotes tumors
T4 439-451 HP_0003002 denotes breast tumor
T5 439-451 HP_0100013 denotes breast tumor
T6 446-451 HP_0002664 denotes tumor
T7 608-613 HP_0002664 denotes tumor
T8 779-792 HP_0003002 denotes breast tumors
T9 779-792 HP_0100013 denotes breast tumors
T10 786-792 HP_0002664 denotes tumors
T11 1139-1152 HP_0003002 denotes breast tumors
T12 1139-1152 HP_0100013 denotes breast tumors
T13 1146-1152 HP_0002664 denotes tumors
T14 1332-1339 HP_0002664 denotes cancers
T15 1381-1387 HP_0002664 denotes tumors

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 40-70 cell_type denotes human mammary epithelial cells
T2 91-107 DNA denotes cDNA microarrays
T3 188-218 cell_type denotes human mammary epithelial cells
T4 286-303 DNA denotes coexpressed genes
T5 340-364 cell_type denotes mammary epithelial cells
T6 710-715 DNA denotes genes
T7 753-767 cell_type denotes cultured cells
T8 1014-1017 protein denotes IFN
T9 1083-1088 DNA denotes genes
T10 1102-1115 cell_type denotes stromal cells
T11 1120-1131 cell_type denotes lymphocytes

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 40-70 NP denotes human mammary epithelial cells
C2 188-218 NP denotes human mammary epithelial cells
C12 245-272 NP denotes primary human breast tumors
C4 340-364 NP denotes mammary epithelial cells
C7 439-459 NP denotes breast tumor samples
C5 604-622 NP denotes the tumor specimen
C6 623-627 NP denotes that
C8 775-800 NP denotes the breast tumors samples
C9 869-880 NP denotes the samples
C10 919-927 NP denotes patterns
C11 928-932 NP denotes that
C13 1135-1152 NP denotes the breast tumors
R1 C2 C1 coref-ident human mammary epithelial cells,human mammary epithelial cells
R2 C4 C2 coref-ident mammary epithelial cells,human mammary epithelial cells
R3 C6 C5 coref-relat that,the tumor specimen
R4 C8 C7 coref-ident the breast tumors samples,breast tumor samples
R5 C9 C8 coref-ident the samples,the breast tumors samples
R6 C11 C10 coref-relat that,patterns
R7 C13 C12 coref-ident the breast tumors,primary human breast tumors

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-90 Sentence denotes Distinctive gene expression patterns in human mammary epithelial cells and breast cancers.
S2 91-273 Sentence denotes cDNA microarrays and a clustering algorithm were used to identify patterns of gene expression in human mammary epithelial cells growing in culture and in primary human breast tumors.
S3 274-460 Sentence denotes Clusters of coexpressed genes identified through manipulations of mammary epithelial cells in vitro also showed consistent patterns of variation in expression among breast tumor samples.
S4 461-697 Sentence denotes By using immunohistochemistry with antibodies against proteins encoded by a particular gene in a cluster, the identity of the cell type within the tumor specimen that contributed the observed gene expression pattern could be determined.
S5 698-881 Sentence denotes Clusters of genes with coherent expression patterns in cultured cells and in the breast tumors samples could be related to specific features of biological variation among the samples.
S6 882-1070 Sentence denotes Two such clusters were found to have patterns that correlated with variation in cell proliferation rates and with activation of the IFN-regulated signal transduction pathway, respectively.
S7 1071-1191 Sentence denotes Clusters of genes expressed by stromal cells and lymphocytes in the breast tumors also were identified in this analysis.
S8 1192-1388 Sentence denotes These results support the feasibility and usefulness of this systematic approach to studying variation in gene expression patterns in human cancers as a means to dissect and classify solid tumors.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 12-27 other_name denotes gene expression
T2 40-70 cell_type denotes human mammary epithelial cells
T3 75-89 other_name denotes breast cancers
T4 91-107 DNA_family_or_group denotes cDNA microarrays
T5 114-134 other_name denotes clustering algorithm
T6 169-184 other_name denotes gene expression
T7 188-218 cell_type denotes human mammary epithelial cells
T8 245-272 tissue denotes primary human breast tumors
T9 286-303 DNA_family_or_group denotes coexpressed genes
T10 340-364 cell_type denotes mammary epithelial cells
T11 439-459 tissue denotes breast tumor samples
T12 470-490 other_name denotes immunohistochemistry
T13 608-622 tissue denotes tumor specimen
T14 653-668 other_name denotes gene expression
T15 710-715 DNA_family_or_group denotes genes
T16 753-767 cell_type denotes cultured cells
T17 779-792 tissue denotes breast tumors
T18 962-986 other_name denotes cell proliferation rates
T19 1014-1017 protein_family_or_group denotes IFN
T20 1083-1088 DNA_family_or_group denotes genes
T21 1102-1115 cell_type denotes stromal cells
T22 1120-1131 cell_type denotes lymphocytes
T23 1298-1322 other_name denotes gene expression patterns
T24 1326-1339 other_name denotes human cancers
T25 1375-1387 tissue denotes solid tumors