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Inflammaging

Id Subject Object Predicate Lexical cue
T1 0-85 Sentence denotes Cell activation and apoptosis by bacterial lipoproteins through toll-like receptor-2.
T2 86-194 Sentence denotes Apoptosis is implicated in the generation and resolution of inflammation in response to bacterial pathogens.
T3 195-289 Sentence denotes All bacterial pathogens produce lipoproteins (BLPs), which trigger the innate immune response.
T4 290-394 Sentence denotes BLPs were found to induce apoptosis in THP-1 monocytic cells through human Toll-like receptor-2 (hTLR2).
T5 395-475 Sentence denotes BLPs also initiated apoptosis in an epithelial cell line transfected with hTLR2.
T6 476-638 Sentence denotes In addition, BLPs stimulated nuclear factor-kappaB, a transcriptional activator of multiple host defense genes, and activated the respiratory burst through hTLR2.
T7 639-738 Sentence denotes Thus, hTLR2 is a molecular link between microbial products, apoptosis, and host defense mechanisms.
T1 0-85 Sentence denotes Cell activation and apoptosis by bacterial lipoproteins through toll-like receptor-2.
T2 86-194 Sentence denotes Apoptosis is implicated in the generation and resolution of inflammation in response to bacterial pathogens.
T3 195-289 Sentence denotes All bacterial pathogens produce lipoproteins (BLPs), which trigger the innate immune response.
T4 290-394 Sentence denotes BLPs were found to induce apoptosis in THP-1 monocytic cells through human Toll-like receptor-2 (hTLR2).
T5 395-475 Sentence denotes BLPs also initiated apoptosis in an epithelial cell line transfected with hTLR2.
T6 476-638 Sentence denotes In addition, BLPs stimulated nuclear factor-kappaB, a transcriptional activator of multiple host defense genes, and activated the respiratory burst through hTLR2.
T7 639-738 Sentence denotes Thus, hTLR2 is a molecular link between microbial products, apoptosis, and host defense mechanisms.

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 33-55 protein denotes bacterial lipoproteins
T2 64-84 protein denotes toll-like receptor-2
T3 227-246 protein denotes lipoproteins (BLPs)
T4 290-294 protein denotes BLPs
T5 329-350 cell_line denotes THP-1 monocytic cells
T6 359-393 protein denotes human Toll-like receptor-2 (hTLR2)
T7 395-399 protein denotes BLPs
T8 431-451 cell_line denotes epithelial cell line
T9 469-474 protein denotes hTLR2
T10 489-493 protein denotes BLPs
T11 505-526 protein denotes nuclear factor-kappaB
T12 530-555 protein denotes transcriptional activator
T13 559-586 DNA denotes multiple host defense genes
T14 632-637 protein denotes hTLR2
T15 645-650 protein denotes hTLR2

genia-medco-coref

Id Subject Object Predicate Lexical cue
C7 20-29 NP denotes apoptosis
C1 33-55 NP denotes bacterial lipoproteins
C14 64-84 NP denotes toll-like receptor-2
C8 86-95 NP denotes Apoptosis
C12 174-193 NP denotes bacterial pathogens
C13 195-218 NP denotes All bacterial pathogens
C2 227-246 NP denotes lipoproteins (BLPs)
C3 248-253 NP denotes which
C4 290-294 NP denotes BLPs
C9 316-325 NP denotes apoptosis
C15 359-393 NP denotes human Toll-like receptor-2 (hTLR2)
C5 395-399 NP denotes BLPs
C10 415-424 NP denotes apoptosis
C16 469-474 NP denotes hTLR2
C6 489-493 NP denotes BLPs
C17 632-637 NP denotes hTLR2
C18 645-650 NP denotes hTLR2
C11 699-708 NP denotes apoptosis
R1 C8 C7 coref-ident Apoptosis,apoptosis
R2 C13 C12 coref-other All bacterial pathogens,bacterial pathogens
R3 C2 C1 coref-ident lipoproteins (BLPs),bacterial lipoproteins
R4 C3 C2 coref-relat which,lipoproteins (BLPs)
R5 C4 C2 coref-ident BLPs,lipoproteins (BLPs)
R6 C9 C8 coref-ident apoptosis,Apoptosis
R7 C15 C14 coref-other human Toll-like receptor-2 (hTLR2),toll-like receptor-2
R8 C5 C4 coref-ident BLPs,BLPs
R9 C10 C9 coref-ident apoptosis,apoptosis
R10 C16 C15 coref-ident hTLR2,human Toll-like receptor-2 (hTLR2)
R11 C6 C5 coref-ident BLPs,BLPs
R12 C17 C16 coref-ident hTLR2,hTLR2
R13 C18 C17 coref-ident hTLR2,hTLR2
R14 C11 C10 coref-ident apoptosis,apoptosis

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-85 Sentence denotes Cell activation and apoptosis by bacterial lipoproteins through toll-like receptor-2.
S2 86-194 Sentence denotes Apoptosis is implicated in the generation and resolution of inflammation in response to bacterial pathogens.
S3 195-289 Sentence denotes All bacterial pathogens produce lipoproteins (BLPs), which trigger the innate immune response.
S4 290-394 Sentence denotes BLPs were found to induce apoptosis in THP-1 monocytic cells through human Toll-like receptor-2 (hTLR2).
S5 395-475 Sentence denotes BLPs also initiated apoptosis in an epithelial cell line transfected with hTLR2.
S6 476-638 Sentence denotes In addition, BLPs stimulated nuclear factor-kappaB, a transcriptional activator of multiple host defense genes, and activated the respiratory burst through hTLR2.
S7 639-738 Sentence denotes Thus, hTLR2 is a molecular link between microbial products, apoptosis, and host defense mechanisms.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-15 other_name denotes Cell activation
T2 20-29 other_name denotes apoptosis
T3 33-55 protein_family_or_group denotes bacterial lipoproteins
T4 64-84 protein_family_or_group denotes toll-like receptor-2
T5 86-95 other_name denotes Apoptosis
T6 146-158 other_name denotes inflammation
T7 174-193 mono_cell denotes bacterial pathogens
T8 199-218 mono_cell denotes bacterial pathogens
T9 227-241 protein_family_or_group denotes lipoproteins (
T10 241-245 protein_family_or_group denotes BLPs
T11 273-288 other_name denotes immune response
T12 290-294 protein_family_or_group denotes BLPs
T13 316-325 other_name denotes apoptosis
T14 329-350 cell_line denotes THP-1 monocytic cells
T15 359-387 protein_family_or_group denotes human Toll-like receptor-2 (
T16 387-392 protein_family_or_group denotes hTLR2
T17 395-399 protein_family_or_group denotes BLPs
T18 415-424 other_name denotes apoptosis
T19 431-451 cell_line denotes epithelial cell line
T20 469-474 protein_family_or_group denotes hTLR2
T21 489-493 protein_family_or_group denotes BLPs
T22 505-526 protein_molecule denotes nuclear factor-kappaB
T23 530-555 protein_family_or_group denotes transcriptional activator
T24 559-586 DNA_family_or_group denotes multiple host defense genes
T25 606-623 other_name denotes respiratory burst
T26 632-637 protein_family_or_group denotes hTLR2
T27 645-650 protein_family_or_group denotes hTLR2
T28 679-697 other_name denotes microbial products
T29 699-708 other_name denotes apoptosis
T30 714-737 other_name denotes host defense mechanisms

bionlp-st-gro-2013-training

Id Subject Object Predicate Lexical cue
T1 0-4 Cell denotes Cell
T4 33-42 Prokaryote denotes bacterial
T5 43-55 Protein denotes lipoproteins
T6 64-84 Protein denotes toll-like receptor-2
T14 227-239 Protein denotes lipoproteins
T15 241-245 Protein denotes BLPs
T18 290-294 Protein denotes BLPs
T21 329-350 Cell denotes THP-1 monocytic cells
T22 359-364 Eukaryote denotes human
T23 365-385 Protein denotes Toll-like receptor-2
T24 387-392 Protein denotes hTLR2
T25 395-399 Protein denotes BLPs
T28 431-451 Cell denotes epithelial cell line
T29 469-474 Protein denotes hTLR2
T30 489-493 Protein denotes BLPs
T32 505-526 TranscriptionActivator denotes nuclear factor-kappaB
T33 530-555 TranscriptionActivator denotes transcriptional activator
T34 581-586 Gene denotes genes
T37 632-637 Protein denotes hTLR2
T38 645-650 Protein denotes hTLR2
T39 679-688 Microorganism denotes microbial
T9 174-193 Prokaryote denotes bacterial pathogens
T10 199-218 Prokaryote denotes bacterial pathogens
E1 5-15 PositiveRegulation denotes activation
E2 20-29 CellDeath denotes apoptosis
E3 86-95 CellDeath denotes Apoptosis
E4 162-170 ResponseProcess denotes response
E5 219-226 Producing denotes produce
E6 254-261 PositiveRegulation denotes trigger
E7 273-288 ResponseProcess denotes immune response
E8 309-315 PositiveRegulation denotes induce
E9 316-325 CellDeath denotes apoptosis
E10 405-414 PositiveRegulation denotes initiated
E11 415-424 CellDeath denotes apoptosis
E12 494-504 Increase denotes stimulated
E13 592-601 PositiveRegulation denotes activated
E14 606-623 CellularMetabolicProcess denotes respiratory burst
E15 689-697 Producing denotes products
E16 699-708 CellDeath denotes apoptosis
E17 714-737 ResponseProcess denotes host defense mechanisms
E18 568-580 ResponseProcess denotes host defense
R3 E9 T21 locatedIn apoptosis,THP-1 monocytic cells
R4 T23 T22 fromSpecies Toll-like receptor-2,human
R5 E11 T28 locatedIn apoptosis,epithelial cell line
R6 T29 T28 locatedIn hTLR2,epithelial cell line
R7 E15 T39 fromSpecies products,microbial
R1 T5 T4 fromSpecies lipoproteins,bacterial
R3 T1 E1 hasPatient Cell,activation
R4 T9 E4 hasAgent bacterial pathogens,response
R5 E3 E4 hasPatient Apoptosis,response
R6 T10 E5 hasAgent bacterial pathogens,produce
R7 T14 E5 hasPatient lipoproteins,produce
R8 T14 E6 hasAgent lipoproteins,trigger
R9 E7 E6 hasPatient immune response,trigger
R10 T18 E8 hasAgent BLPs,induce
R11 E9 E8 hasPatient apoptosis,induce
R12 T25 E10 hasAgent BLPs,initiated
R13 E11 E10 hasPatient apoptosis,initiated
R14 T30 E12 hasAgent BLPs,stimulated
R15 T32 E12 hasPatient nuclear factor-kappaB,stimulated
R16 T30 E13 hasAgent BLPs,activated
R17 E14 E13 hasPatient respiratory burst,activated