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PubMed:10409763 JSONTXT

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PMID_GLOBAL

Id Subject Object Predicate Lexical cue mondo_id
T1 73-78 DiseaseOrPhenotypicFeature denotes tumor 0005070
T2 345-350 DiseaseOrPhenotypicFeature denotes tumor 0005070
T3 1039-1042 DiseaseOrPhenotypicFeature denotes can 0012833
T4 1343-1359 DiseaseOrPhenotypicFeature denotes Burkitt lymphoma 0007243

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 345-350 HP_0002664 denotes tumor
T2 1343-1359 HP_0030080 denotes Burkitt lymphoma
T3 1351-1359 HP_0002665 denotes lymphoma

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 4-60 protein denotes Epstein-Barr virus oncoprotein latent membrane protein 1
T2 73-123 protein denotes tumor necrosis factor receptor-associated proteins
T3 124-129 protein denotes TRADD
T4 134-162 protein denotes receptor-interacting protein
T5 164-167 protein denotes RIP
T6 210-213 protein denotes RIP
T7 218-227 protein denotes NF-kappaB
T8 254-299 protein denotes Epstein-Barr virus (EBV) transforming protein
T9 300-304 protein denotes LMP1
T10 345-417 protein denotes tumor necrosis factor receptor 1 (TNFR1)-associated death domain protein
T11 418-423 protein denotes TRADD
T12 435-444 protein denotes NF-kappaB
T13 449-472 protein denotes c-Jun N-terminal kinase
T14 562-566 protein denotes LMP1
T15 585-590 protein denotes TRADD
T16 604-609 protein denotes TNFR1
T17 628-633 protein denotes TRADD
T18 635-639 protein denotes LMP1
T19 678-687 protein denotes NF-kappaB
T20 706-711 protein denotes TRADD
T21 715-724 protein denotes NF-kappaB
T22 743-748 protein denotes TNFR1
T23 794-798 protein denotes LMP1
T24 816-821 protein denotes TRADD
T25 846-855 protein denotes NF-kappaB
T26 874-879 protein denotes TNFR1
T27 889-894 protein denotes TRADD
T28 916-920 protein denotes LMP1
T29 946-955 protein denotes NF-kappaB
T30 972-977 protein denotes TRADD
T31 999-1018 protein denotes residues 122 to 293
T32 1027-1032 protein denotes TNFR1
T33 1034-1038 protein denotes LMP1
T34 1066-1094 protein denotes receptor-interacting protein
T35 1096-1099 protein denotes RIP
T36 1128-1131 protein denotes RIP
T37 1135-1176 cell_line denotes EBV-transformed lymphoblastoid cell lines
T38 1192-1196 protein denotes LMP1
T39 1214-1217 protein denotes RIP
T40 1222-1231 protein denotes NF-kappaB
T41 1282-1287 protein denotes TRADD
T42 1291-1294 protein denotes RIP
T43 1296-1300 protein denotes LMP1
T44 1330-1395 cell_line denotes EBV-negative Burkitt lymphoma or human embryonic kidney 293 cells
T45 1483-1487 protein denotes LMP1
T46 1489-1494 protein denotes TRADD
T47 1500-1503 protein denotes RIP

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 0-60 NP denotes The Epstein-Barr virus oncoprotein latent membrane protein 1
C2 69-129 NP denotes the tumor necrosis factor receptor-associated proteins TRADD
C3 134-168 NP denotes receptor-interacting protein (RIP)
C4 210-213 NP denotes RIP
C5 218-238 NP denotes NF-kappaB activation
C7 250-304 NP denotes the Epstein-Barr virus (EBV) transforming protein LMP1
C6 240-304 NP denotes A site in the Epstein-Barr virus (EBV) transforming protein LMP1
C8 305-309 NP denotes that
C9 341-423 NP denotes the tumor necrosis factor receptor 1 (TNFR1)-associated death domain protein TRADD
C10 585-590 NP denotes TRADD
C11 628-633 NP denotes TRADD
C12 635-639 NP denotes LMP1
C13 715-735 NP denotes NF-kappaB activation
C14 743-748 NP denotes TNFR1
C15 794-798 NP denotes LMP1
C16 846-866 NP denotes NF-kappaB activation
C17 874-879 NP denotes TNFR1
C18 916-920 NP denotes LMP1
C19 946-966 NP denotes NF-kappaB activation
C20 1027-1032 NP denotes TNFR1
C21 1034-1038 NP denotes LMP1
C22 1066-1100 NP denotes receptor-interacting protein (RIP)
C23 1192-1196 NP denotes LMP1
C24 1214-1217 NP denotes RIP
C25 1222-1242 NP denotes NF-kappaB activation
C26 1282-1287 NP denotes TRADD
C27 1291-1294 NP denotes RIP
C28 1296-1300 NP denotes LMP1
C29 1442-1468 NP denotes the molecular interactions
C30 1477-1482 NP denotes which
C31 1483-1487 NP denotes LMP1
C32 1489-1494 NP denotes TRADD
C33 1500-1503 NP denotes RIP
R1 C4 C3 coref-ident RIP,receptor-interacting protein (RIP)
R2 C7 C1 coref-ident the Epstein-Barr virus (EBV) transforming protein LMP1,The Epstein-Barr virus oncoprotein latent membrane protein 1
R3 C8 C6 coref-relat that,A site in the Epstein-Barr virus (EBV) transforming protein LMP1
R4 C9 C2 coref-ident the tumor necrosis factor receptor 1 (TNFR1)-associated death domain protein TRADD,the tumor necrosis factor receptor-associated proteins TRADD
R5 C10 C9 coref-ident TRADD,the tumor necrosis factor receptor 1 (TNFR1)-associated death domain protein TRADD
R6 C11 C10 coref-ident TRADD,TRADD
R7 C12 C7 coref-ident LMP1,the Epstein-Barr virus (EBV) transforming protein LMP1
R8 C13 C5 coref-ident NF-kappaB activation,NF-kappaB activation
R9 C15 C12 coref-ident LMP1,LMP1
R10 C16 C13 coref-ident NF-kappaB activation,NF-kappaB activation
R11 C17 C14 coref-ident TNFR1,TNFR1
R12 C18 C15 coref-ident LMP1,LMP1
R13 C19 C16 coref-ident NF-kappaB activation,NF-kappaB activation
R14 C20 C17 coref-ident TNFR1,TNFR1
R15 C21 C18 coref-ident LMP1,LMP1
R16 C22 C4 coref-ident receptor-interacting protein (RIP),RIP
R17 C23 C21 coref-ident LMP1,LMP1
R18 C24 C22 coref-ident RIP,receptor-interacting protein (RIP)
R19 C25 C19 coref-ident NF-kappaB activation,NF-kappaB activation
R20 C26 C11 coref-ident TRADD,TRADD
R21 C27 C24 coref-ident RIP,RIP
R22 C28 C23 coref-ident LMP1,LMP1
R23 C30 C29 coref-relat which,the molecular interactions
R24 C31 C28 coref-ident LMP1,LMP1
R25 C32 C26 coref-ident TRADD,TRADD
R26 C33 C27 coref-ident RIP,RIP

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-239 Sentence denotes The Epstein-Barr virus oncoprotein latent membrane protein 1 engages the tumor necrosis factor receptor-associated proteins TRADD and receptor-interacting protein (RIP) but does not induce apoptosis or require RIP for NF-kappaB activation.
S2 240-544 Sentence denotes A site in the Epstein-Barr virus (EBV) transforming protein LMP1 that constitutively associates with the tumor necrosis factor receptor 1 (TNFR1)-associated death domain protein TRADD to mediate NF-kappaB and c-Jun N-terminal kinase activation is critical for long-term lymphoblastoid cell proliferation.
S3 545-634 Sentence denotes We now find that LMP1 signaling through TRADD differs from TNFR1 signaling through TRADD.
S4 635-784 Sentence denotes LMP1 needs only 11 amino acids to activate NF-kappaB or synergize with TRADD in NF-kappaB activation, while TNFR1 requires approximately 70 residues.
S5 785-915 Sentence denotes Further, LMP1 does not require TRADD residues 294 to 312 for NF-kappaB activation, while TNFR1 requires TRADD residues 296 to 302.
S6 916-1019 Sentence denotes LMP1 is partially blocked for NF-kappaB activation by a TRADD mutant consisting of residues 122 to 293.
S7 1020-1177 Sentence denotes Unlike TNFR1, LMP1 can interact directly with receptor-interacting protein (RIP) and stably associates with RIP in EBV-transformed lymphoblastoid cell lines.
S8 1178-1243 Sentence denotes Surprisingly, LMP1 does not require RIP for NF-kappaB activation.
S9 1244-1396 Sentence denotes Despite constitutive association with TRADD or RIP, LMP1 does not induce apoptosis in EBV-negative Burkitt lymphoma or human embryonic kidney 293 cells.
S10 1397-1554 Sentence denotes These results add a different perspective to the molecular interactions through which LMP1, TRADD, and RIP participate in B-lymphocyte activation and growth.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T43 1135-1138 virus denotes EBV
T1 4-22 virus denotes Epstein-Barr virus
T2 73-123 protein_family_or_group denotes tumor necrosis factor receptor-associated proteins
T3 124-129 protein_family_or_group denotes TRADD
T4 134-162 protein_molecule denotes receptor-interacting protein
T5 164-167 protein_molecule denotes RIP
T6 189-198 other_name denotes apoptosis
T7 210-213 protein_molecule denotes RIP
T8 218-227 protein_complex denotes NF-kappaB
T9 254-272 virus denotes Epstein-Barr virus
T10 274-277 virus denotes EBV
T11 300-304 protein_molecule denotes LMP1
T12 345-377 protein_molecule denotes tumor necrosis factor receptor 1
T13 379-384 protein_molecule denotes TNFR1
T14 418-423 protein_family_or_group denotes TRADD
T15 435-444 protein_complex denotes NF-kappaB
T16 449-472 protein_molecule denotes c-Jun N-terminal kinase
T17 500-543 other_name denotes long-term lymphoblastoid cell proliferation
T18 562-566 protein_molecule denotes LMP1
T19 585-590 protein_family_or_group denotes TRADD
T20 604-609 protein_molecule denotes TNFR1
T21 628-633 protein_family_or_group denotes TRADD
T22 635-639 protein_molecule denotes LMP1
T23 654-665 amino_acid_monomer denotes amino acids
T24 678-687 protein_complex denotes NF-kappaB
T25 706-711 protein_family_or_group denotes TRADD
T26 715-724 protein_molecule denotes NF-kappaB
T27 743-748 protein_molecule denotes TNFR1
T28 775-783 amino_acid_monomer denotes residues
T29 794-798 protein_molecule denotes LMP1
T30 816-821 protein_family_or_group denotes TRADD
T31 846-855 protein_complex denotes NF-kappaB
T32 874-879 protein_molecule denotes TNFR1
T33 889-894 protein_family_or_group denotes TRADD
T34 916-920 protein_molecule denotes LMP1
T35 946-955 protein_complex denotes NF-kappaB
T36 972-977 protein_family_or_group denotes TRADD
T37 999-1007 amino_acid_monomer denotes residues
T38 1027-1032 protein_molecule denotes TNFR1
T39 1034-1038 protein_molecule denotes LMP1
T40 1066-1094 protein_molecule denotes receptor-interacting protein
T41 1096-1099 protein_molecule denotes RIP
T42 1128-1131 protein_molecule denotes RIP
T44 1192-1196 protein_molecule denotes LMP1
T45 1214-1217 protein_molecule denotes RIP
T46 1222-1231 protein_complex denotes NF-kappaB
T47 1252-1276 other_name denotes constitutive association
T48 1282-1287 protein_family_or_group denotes TRADD
T49 1291-1294 protein_molecule denotes RIP
T50 1296-1300 protein_molecule denotes LMP1
T51 1317-1326 other_name denotes apoptosis
T52 1446-1468 other_name denotes molecular interactions
T53 1483-1487 protein_molecule denotes LMP1
T54 1489-1494 protein_family_or_group denotes TRADD
T55 1500-1503 protein_molecule denotes RIP