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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 22-34 cell_type denotes granulocytes
T2 39-52 cell_type denotes T lymphocytes
T3 89-95 DNA denotes HUMARA
T4 133-145 DNA denotes X-chromosome
T5 249-277 DNA denotes human androgen receptor gene
T6 279-285 DNA denotes HUMARA
T7 544-555 cell_type denotes blood cells
T8 609-621 DNA denotes X-chromosome
T9 687-693 DNA denotes HUMARA
T10 749-761 cell_type denotes granulocytes
T11 766-773 cell_line denotes T cells
T12 897-911 DNA denotes HUMARA alleles
T13 955-967 cell_type denotes granulocytes
T14 975-982 cell_line denotes T cells
T15 1080-1092 cell_type denotes granulocytes
T16 1097-1104 cell_line denotes T cells
T17 1205-1212 cell_line denotes T cells

genia-medco-coref

Id Subject Object Predicate Lexical cue
C2 22-34 NP denotes granulocytes
C3 39-52 NP denotes T lymphocytes
C1 22-52 NP denotes granulocytes and T lymphocytes
C4 245-292 NP denotes The human androgen receptor gene (HUMARA) assay
C5 529-540 NP denotes Lyonization
C6 609-642 NP denotes X-chromosome methylation patterns
C7 644-649 NP denotes which
C8 658-669 NP denotes Lyonization
C9 683-699 NP denotes the HUMARA assay
C10 955-967 NP denotes granulocytes
C11 975-982 NP denotes T cells
C13 1080-1092 NP denotes granulocytes
C14 1097-1104 NP denotes T cells
C12 1080-1104 NP denotes granulocytes and T cells
C15 1205-1212 NP denotes T cells
R1 C7 C6 coref-relat which,X-chromosome methylation patterns
R2 C8 C5 coref-ident Lyonization,Lyonization
R3 C9 C4 coref-ident the HUMARA assay,The human androgen receptor gene (HUMARA) assay
R4 C10 C2 coref-ident granulocytes,granulocytes
R5 C11 C3 coref-ident T cells,T lymphocytes
R6 C13 C10 coref-ident granulocytes,granulocytes
R7 C14 C11 coref-ident T cells,T cells
R8 C12 C1 coref-ident granulocytes and T cells,granulocytes and T lymphocytes
R9 C15 C14 coref-ident T cells,T cells

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-103 Sentence denotes Clonality analysis of granulocytes and T lymphocytes in healthy females by the PCR-based HUMARA method.
S2 104-244 Sentence denotes Clonality analysis utilizing X-chromosome inactivation has been used in the study of various diseases, including hematological malignancies.
S3 245-418 Sentence denotes The human androgen receptor gene (HUMARA) assay is the newest of such methods, and the majority of the female population can be assessed by this relatively simple procedure.
S4 419-578 Sentence denotes One problem in using these clonality analysis methods, however, is that there may be significant variation in Lyonization in blood cells in normal individuals.
S5 579-846 Sentence denotes To determine the diversity in X-chromosome methylation patterns, which reflect Lyonization, assessed by the HUMARA assay in the supposedly normal population, we analyzed granulocytes and T cells from 97 relatively young (18- to 35-year-old) healthy female volunteers.
S6 847-1028 Sentence denotes We found that the methylation patterns in the two HUMARA alleles were distributed even more widely, both in granulocytes and in T cells, than previously reported with other methods.
S7 1029-1125 Sentence denotes We also found that the deviation of methylation in granulocytes and T cells was well correlated.
S8 1126-1358 Sentence denotes Thus, we conclude that appropriate controls from the same individuals, such as T cells in the case of stem cell disorders, should always be employed to conclusively determine whether certain cells of hematopoietic origin are clonal.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 22-34 cell_type denotes granulocytes
T2 39-52 cell_type denotes T lymphocytes
T3 56-71 multi_cell denotes healthy females
T4 79-88 other_name denotes PCR-based
T5 89-95 DNA_domain_or_region denotes HUMARA
T6 133-145 DNA_molecule denotes X-chromosome
T7 217-243 other_name denotes hematological malignancies
T8 249-272 protein_domain_or_region denotes human androgen receptor
T9 279-285 DNA_domain_or_region denotes HUMARA
T10 348-365 other_name denotes female population
T11 446-472 other_name denotes clonality analysis methods
T12 529-540 other_name denotes Lyonization
T13 544-555 cell_type denotes blood cells
T14 559-577 multi_cell denotes normal individuals
T15 609-621 DNA_molecule denotes X-chromosome
T16 658-669 other_name denotes Lyonization
T17 687-693 DNA_domain_or_region denotes HUMARA
T18 749-761 cell_type denotes granulocytes
T19 766-773 cell_line denotes T cells
T20 828-845 multi_cell denotes female volunteers
T21 865-885 other_name denotes methylation patterns
T22 897-911 DNA_domain_or_region denotes HUMARA alleles
T23 955-967 cell_type denotes granulocytes
T24 975-982 cell_line denotes T cells
T25 1065-1076 other_name denotes methylation
T26 1080-1092 cell_type denotes granulocytes
T27 1097-1104 cell_line denotes T cells
T28 1205-1212 cell_line denotes T cells
T29 1228-1247 other_name denotes stem cell disorders
T30 1326-1346 other_name denotes hematopoietic origin