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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 25-37 DNA denotes X-chromosome
T2 58-86 DNA denotes human androgen receptor gene
T3 88-94 DNA denotes Humara
T4 401-413 DNA denotes X-chromosome
T5 640-678 DNA denotes human androgen receptor (HUMARA) locus
T6 874-880 DNA denotes allele
T7 882-888 DNA denotes allele
T8 1157-1163 DNA denotes allele

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 142-177 NP denotes chronic myeloproliferative diseases
C2 179-201 NP denotes secondary neutrophilia
C3 207-230 NP denotes reactive thrombocytosis
C4 232-274 NP denotes Chronic myeloproliferative diseases (MPDs)
C5 389-452 NP denotes analysis of X-chromosome inactivation (XCI) patterns in females
C6 503-517 NP denotes this technique
C7 717-739 NP denotes secondary neutrophilia
C8 755-778 NP denotes reactive thrombocytosis
C10 798-810 NP denotes chronic MPDs
C9 784-810 NP denotes 86 women with chronic MPDs
C12 1120-1133 NP denotes a chronic MPD
C11 1103-1133 NP denotes 86 patients with a chronic MPD
C13 1374-1385 NP denotes chronic MPD
R1 C4 C1 coref-ident Chronic myeloproliferative diseases (MPDs),chronic myeloproliferative diseases
R2 C6 C5 coref-ident this technique,analysis of X-chromosome inactivation (XCI) patterns in females
R3 C7 C2 coref-ident secondary neutrophilia,secondary neutrophilia
R4 C8 C3 coref-ident reactive thrombocytosis,reactive thrombocytosis
R5 C10 C4 coref-ident chronic MPDs,Chronic myeloproliferative diseases (MPDs)
R6 C12 C10 coref-ident a chronic MPD,chronic MPDs
R7 C11 C9 coref-ident 86 patients with a chronic MPD,86 women with chronic MPDs
R8 C13 C12 coref-ident chronic MPD,a chronic MPD

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-96 Sentence denotes Clonality analysis using X-chromosome inactivation at the human androgen receptor gene (Humara).
S2 97-231 Sentence denotes Evaluation of large cohorts of patients with chronic myeloproliferative diseases, secondary neutrophilia, and reactive thrombocytosis.
S3 232-349 Sentence denotes Chronic myeloproliferative diseases (MPDs) are not associated with consistent cytogenetic or molecular abnormalities.
S4 350-493 Sentence denotes Demonstration of clonal cell growth by analysis of X-chromosome inactivation (XCI) patterns in females provides a promising tool for diagnosis.
S5 494-811 Sentence denotes However, this technique can be complicated by excessive lyonization of normal cells mimicking clonal cell growth: We analyzed XCI patterns at the human androgen receptor (HUMARA) locus in 146 healthy females, 65 women with secondary neutrophilia, 31 women with reactive thrombocytosis, and 86 women with chronic MPDs.
S6 812-949 Sentence denotes A skewed XCI pattern with greater than 75% amplification of 1 allele (allele ratio > 3:1) was found in 22 (9.1%) of 242 control subjects.
S7 950-1099 Sentence denotes The incidence of skewing was statistically significantly lower in women younger than 30 years (2/73) compared with women older than 60 years (10/53).
S8 1100-1273 Sentence denotes Of 86 patients with a chronic MPD, 71 (82%) exhibited an allele ratio greater than 3:1, whereas only 10 (12%) of 86 age-matched control subjects showed a skewed XCI pattern.
S9 1274-1484 Sentence denotes Although statistical evaluation of the data showed a significant difference between patients with a chronic MPD and control subjects, proof of clonality in individual, especially elderly, patients is difficult.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 25-37 DNA_molecule denotes X-chromosome
T2 58-86 DNA_domain_or_region denotes human androgen receptor gene
T3 88-94 DNA_domain_or_region denotes Humara
T4 142-177 other_name denotes chronic myeloproliferative diseases
T5 179-201 other_name denotes secondary neutrophilia
T6 207-230 other_name denotes reactive thrombocytosis
T7 232-267 other_name denotes Chronic myeloproliferative diseases
T8 269-273 other_name denotes MPDs
T9 401-413 DNA_molecule denotes X-chromosome
T10 588-606 other_name denotes clonal cell growth
T11 620-632 other_name denotes XCI patterns
T12 640-678 DNA_domain_or_region denotes human androgen receptor (HUMARA) locus
T13 686-701 multi_cell denotes healthy females
T14 706-711 multi_cell denotes women
T15 717-739 other_name denotes secondary neutrophilia
T16 744-749 multi_cell denotes women
T17 755-778 other_name denotes reactive thrombocytosis
T18 787-792 multi_cell denotes women
T19 798-805 other_name denotes chronic
T20 806-810 other_name denotes MPDs
T21 814-832 other_name denotes skewed XCI pattern
T22 874-880 DNA_domain_or_region denotes allele
T23 882-888 DNA_domain_or_region denotes allele
T24 932-948 multi_cell denotes control subjects
T25 1016-1021 multi_cell denotes women
T26 1065-1070 multi_cell denotes women
T27 1106-1114 multi_cell denotes patients
T28 1122-1133 other_name denotes chronic MPD
T29 1157-1163 DNA_domain_or_region denotes allele
T30 1228-1244 multi_cell denotes control subjects
T31 1254-1272 other_name denotes skewed XCI pattern
T32 1358-1366 multi_cell denotes patients
T33 1374-1385 other_name denotes chronic MPD
T34 1390-1406 multi_cell denotes control subjects
T35 1462-1470 multi_cell denotes patients

DisGeNET

Id Subject Object Predicate Lexical cue
T0 646-663 gene:367 denotes androgen receptor
T1 727-739 disease:C3665444 denotes neutrophilia
T2 646-663 gene:367 denotes androgen receptor
T3 755-778 disease:C0457506 denotes reactive thrombocytosis
T4 665-671 gene:367 denotes HUMARA
T5 727-739 disease:C3665444 denotes neutrophilia
T6 665-671 gene:367 denotes HUMARA
T7 755-778 disease:C0457506 denotes reactive thrombocytosis
R1 T0 T1 associated_with androgen receptor,neutrophilia
R2 T2 T3 associated_with androgen receptor,reactive thrombocytosis
R3 T4 T5 associated_with HUMARA,neutrophilia
R4 T6 T7 associated_with HUMARA,reactive thrombocytosis

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 764-778 HP_0001894 denotes thrombocytosis