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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 14-24 protein denotes NF-kappa B
T2 126-142 protein denotes caspase-1 and -3
T3 144-154 protein denotes NF-kappa B
T4 201-214 DNA denotes various genes
T5 272-279 cell_type denotes T cells
T6 319-329 protein denotes NF-kappa B
T7 422-440 protein denotes NF-kappa B1 dimers
T8 503-527 cell_type denotes resting normal human PBL
T9 543-553 protein denotes NF-kappa B
T10 736-753 protein denotes caspase inhibitor
T11 754-763 protein denotes Z-VAD-fmk
T12 789-800 protein denotes Ac-DEVD-fmk
T13 845-852 protein denotes caspase
T14 900-910 protein denotes NF-kappa B
T15 1017-1035 protein denotes soluble Fas ligand
T16 1037-1041 protein denotes CD95
T17 1075-1106 protein denotes active death effector proteases
T18 1107-1116 protein denotes caspase-1
T19 1123-1145 protein denotes IL-1 converting enzyme
T20 1148-1157 protein denotes caspase-3
T21 1164-1182 protein denotes CPP32/Yama/apopain
T22 1189-1198 protein denotes caspase-6
T23 1228-1248 protein denotes caspase-3 substrates
T24 1249-1276 protein denotes poly(ADP-ribose) polymerase
T25 1281-1308 protein denotes DNA fragmentation factor-45
T26 1394-1402 protein denotes caspases
T27 1434-1441 cell_type denotes T cells
T28 1455-1465 protein denotes NF-kappa B
T29 1579-1589 protein denotes NF-kappa B
T30 1605-1614 cell_type denotes naive PBL

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 14-33 NP denotes NF-kappa B activity
C2 37-56 NP denotes human T lymphocytes
C3 144-154 NP denotes NF-kappa B
C4 201-214 NP denotes various genes
C5 215-219 NP denotes that
C6 272-279 NP denotes T cells
C7 281-293 NP denotes Our findings
C9 319-338 NP denotes NF-kappa B activity
C8 304-371 NP denotes suppression of NF-kappa B activity with cell-permeable SN50 peptide
C10 373-378 NP denotes which
C11 422-440 NP denotes NF-kappa B1 dimers
C12 454-459 NP denotes their
C13 543-553 NP denotes NF-kappa B
C14 818-841 NP denotes SN50-mediated apoptosis
C15 1310-1324 NP denotes These findings
C16 1434-1441 NP denotes T cells
C17 1509-1531 NP denotes SN50-induced apoptosis
C18 1533-1545 NP denotes Our findings
C19 1579-1589 NP denotes NF-kappa B
R1 C5 C4 coref-relat that,various genes
R2 C6 C2 coref-ident T cells,human T lymphocytes
R3 C9 C1 coref-ident NF-kappa B activity,NF-kappa B activity
R4 C10 C8 coref-relat which,suppression of NF-kappa B activity with cell-permeable SN50 peptide
R5 C12 C11 coref-pron their,NF-kappa B1 dimers
R6 C13 C3 coref-ident NF-kappa B,NF-kappa B
R7 C15 C7 coref-ident These findings,Our findings
R8 C16 C6 coref-ident T cells,T cells
R9 C17 C14 coref-ident SN50-induced apoptosis,SN50-mediated apoptosis
R10 C18 C15 coref-ident Our findings,These findings
R11 C19 C13 coref-ident NF-kappa B,NF-kappa B

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-143 Sentence denotes Inhibition of NF-kappa B activity in human T lymphocytes induces caspase-dependent apoptosis without detectable activation of caspase-1 and -3.
S2 144-280 Sentence denotes NF-kappa B is involved in the transcriptional control of various genes that act as extrinsic and intrinsic survival factors for T cells.
S3 281-528 Sentence denotes Our findings show that suppression of NF-kappa B activity with cell-permeable SN50 peptide, which masks the nuclear localization sequence of NF-kappa B1 dimers and prevents their nuclear localization, induces apoptosis in resting normal human PBL.
S4 529-686 Sentence denotes Inhibition of NF-kappa B resulted in the externalization of phosphatidylserine, induction of DNA breaks, and morphological changes consistent with apoptosis.
S5 687-863 Sentence denotes DNA fragmentation was efficiently blocked by the caspase inhibitor Z-VAD-fmk and partially blocked by Ac-DEVD-fmk, suggesting that SN50-mediated apoptosis is caspase-dependent.
S6 864-1309 Sentence denotes Interestingly, apoptosis induced by NF-kappa B suppression, in contrast to that induced by TPEN (N,N,N',N'-tetrakis [2-pyridylmethyl]ethylenediamine) or soluble Fas ligand (CD95), was observed in the absence of active death effector proteases caspase-1-like (IL-1 converting enzyme), caspase-3-like (CPP32/Yama/apopain), and caspase-6-like and without cleavage of caspase-3 substrates poly(ADP-ribose) polymerase and DNA fragmentation factor-45.
S7 1310-1416 Sentence denotes These findings suggest either low level of activation is required or that different caspases are involved.
S8 1417-1532 Sentence denotes Preactivation of T cells resulting in NF-kappa B nuclear translocation protected cells from SN50-induced apoptosis.
S9 1533-1615 Sentence denotes Our findings demonstrate an essential role of NF-kappa B in survival of naive PBL.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 14-24 protein_complex denotes NF-kappa B
T2 83-92 other_name denotes apoptosis
T3 144-154 protein_complex denotes NF-kappa B
T4 201-214 DNA_family_or_group denotes various genes
T5 272-279 cell_type denotes T cells
T6 319-329 protein_complex denotes NF-kappa B
T7 344-358 peptide denotes cell-permeable
T8 359-363 peptide denotes SN50
T9 422-433 protein_complex denotes NF-kappa B1
T10 460-480 other_name denotes nuclear localization
T11 490-499 other_name denotes apoptosis
T12 503-527 cell_type denotes resting normal human PBL
T13 543-553 protein_complex denotes NF-kappa B
T14 589-607 amino_acid_monomer denotes phosphatidylserine
T15 676-685 other_name denotes apoptosis
T16 687-704 other_name denotes DNA fragmentation
T17 736-753 protein_family_or_group denotes caspase inhibitor
T18 754-763 protein_molecule denotes Z-VAD-fmk
T19 789-800 protein_molecule denotes Ac-DEVD-fmk
T20 818-822 peptide denotes SN50
T21 832-841 other_name denotes apoptosis
T22 845-852 protein_family_or_group denotes caspase
T23 879-888 other_name denotes apoptosis
T24 900-910 protein_complex denotes NF-kappa B
T25 955-959 other_organic_compound denotes TPEN
T26 961-1012 other_organic_compound denotes N,N,N',N'-tetrakis [2-pyridylmethyl]ethylenediamine
T27 1017-1035 protein_molecule denotes soluble Fas ligand
T28 1037-1041 protein_molecule denotes CD95
T29 1075-1106 protein_family_or_group denotes active death effector proteases
T30 1107-1116 protein_molecule denotes caspase-1
T31 1123-1145 protein_molecule denotes IL-1 converting enzyme
T32 1148-1157 protein_molecule denotes caspase-3
T33 1164-1182 protein_molecule denotes CPP32/Yama/apopain
T34 1189-1198 protein_molecule denotes caspase-6
T35 1228-1237 protein_molecule denotes caspase-3
T36 1249-1254 protein_molecule denotes poly(
T37 1254-1257 nucleotide denotes ADP
T38 1281-1298 other_name denotes DNA fragmentation
T39 1394-1402 protein_family_or_group denotes caspases
T40 1434-1441 cell_type denotes T cells
T41 1455-1465 protein_complex denotes NF-kappa B
T42 1509-1513 peptide denotes SN50
T43 1522-1531 other_name denotes apoptosis
T44 1579-1589 protein_complex denotes NF-kappa B
T45 1605-1614 cell_type denotes naive PBL