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PubMed:10358178 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 9-24 protein denotes NF-ATc isoforms
T2 87-100 cell_type denotes T lymphocytes
T3 106-126 protein denotes transcription factor
T4 127-133 protein denotes NF-ATc
T5 167-180 cell_type denotes T lymphocytes
T6 185-208 cell_type denotes embryonic cardiac cells
T7 371-384 cell_type denotes naive T cells
T8 399-413 protein denotes NF-ATc isoform
T9 417-433 cell_type denotes effector T cells
T10 468-484 protein denotes isoform NF-ATc/A
T11 513-523 protein denotes C terminus
T12 546-547 protein denotes B
T13 552-553 protein denotes C
T14 656-697 protein denotes strong N-terminal trans-activation domain
T15 699-704 protein denotes TAD-A
T16 735-750 protein denotes NF-ATc isoforms
T17 752-760 protein denotes NF-ATc/C
T18 779-802 protein denotes trans-activation domain
T19 804-809 protein denotes TAD-B
T20 857-864 cell_type denotes T cells
T21 893-898 protein denotes TAD-A
T22 928-933 protein denotes TAD-B
T23 947-952 protein denotes TAD-A
T24 954-959 protein denotes TAD-B
T25 1001-1060 cell_line denotes 12-O-tetradecanoyl 12-phorbol 13-acetate-stimulated T cells
T26 1104-1112 protein denotes NF-ATc/B
T27 1178-1193 protein denotes NF-ATc/B and -C
T28 1240-1259 cell_type denotes naive T lymphocytes
T29 1269-1284 protein denotes NF-ATc/B and -C

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-101 Sentence denotes Multiple NF-ATc isoforms with individual transcriptional properties are synthesized in T lymphocytes.
S2 102-250 Sentence denotes The transcription factor NF-ATc that controls gene expression in T lymphocytes and embryonic cardiac cells is expressed in three prominent isoforms.
S3 251-434 Sentence denotes This is due to alternative splice/polyadenylation events that lead to the predominant synthesis of two long isoforms in naive T cells and a shorter NF-ATc isoform in effector T cells.
S4 435-618 Sentence denotes Whereas the previously described isoform NF-ATc/A contains a relatively short C terminus, the longer isoforms, B and C, span extra C-terminal peptides of 128 and 246 aa, respectively.
S5 619-837 Sentence denotes We show here that in addition to the strong N-terminal trans-activation domain, TAD-A, which is common to all three NF-ATc isoforms, NF-ATc/C contains a second trans-activation domain, TAD-B, in its C-terminal peptide.
S6 838-1061 Sentence denotes Various stimuli of T cells that induce the activity of TAD-A also enhance the activity of TAD-B, but, unlike TAD-A, TAD-B remains unphosphorylated by protein from 12-O-tetradecanoyl 12-phorbol 13-acetate-stimulated T cells.
S7 1062-1157 Sentence denotes The shorter C-terminal peptide of isoform NF-ATc/B exerts a suppressive transcriptional effect.
S8 1158-1315 Sentence denotes These properties of NF-ATc/B and -C might be of importance for gene regulation in naive T lymphocytes in which NF-ATc/B and -C are predominantly synthesized.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 87-100 NP denotes T lymphocytes
C2 102-133 NP denotes The transcription factor NF-ATc
C3 134-138 NP denotes that
C4 167-180 NP denotes T lymphocytes
C5 225-249 NP denotes three prominent isoforms
C6 266-307 NP denotes alternative splice/polyadenylation events
C7 308-312 NP denotes that
C8 371-384 NP denotes naive T cells
C9 525-544 NP denotes the longer isoforms
C10 546-553 NP denotes B and C
C11 652-697 NP denotes the strong N-terminal trans-activation domain
C12 699-704 NP denotes TAD-A
C13 706-711 NP denotes which
C14 725-750 NP denotes all three NF-ATc isoforms
C15 752-760 NP denotes NF-ATc/C
C16 770-802 NP denotes a second trans-activation domain
C17 804-809 NP denotes TAD-B
C18 814-817 NP denotes its
C20 857-864 NP denotes T cells
C19 838-864 NP denotes Various stimuli of T cells
C21 865-869 NP denotes that
C22 893-898 NP denotes TAD-A
C23 928-933 NP denotes TAD-B
C24 947-952 NP denotes TAD-A
C25 954-959 NP denotes TAD-B
C26 1178-1193 NP denotes NF-ATc/B and -C
C28 1240-1259 NP denotes naive T lymphocytes
C27 1221-1259 NP denotes gene regulation in naive T lymphocytes
C29 1263-1268 NP denotes which
C30 1269-1284 NP denotes NF-ATc/B and -C
R1 C3 C2 coref-relat that,The transcription factor NF-ATc
R2 C4 C1 coref-ident T lymphocytes,T lymphocytes
R3 C7 C6 coref-relat that,alternative splice/polyadenylation events
R4 C10 C9 coref-appos B and C,the longer isoforms
R5 C12 C11 coref-appos TAD-A,the strong N-terminal trans-activation domain
R6 C13 C11 coref-relat which,the strong N-terminal trans-activation domain
R7 C14 C5 coref-ident all three NF-ATc isoforms,three prominent isoforms
R8 C17 C16 coref-appos TAD-B,a second trans-activation domain
R9 C18 C15 coref-pron its,NF-ATc/C
R10 C20 C4 coref-ident T cells,T lymphocytes
R11 C21 C19 coref-relat that,Various stimuli of T cells
R12 C22 C11 coref-ident TAD-A,the strong N-terminal trans-activation domain
R13 C23 C16 coref-ident TAD-B,a second trans-activation domain
R14 C24 C22 coref-ident TAD-A,TAD-A
R15 C25 C23 coref-ident TAD-B,TAD-B
R16 C28 C8 coref-ident naive T lymphocytes,naive T cells
R17 C29 C27 coref-relat which,gene regulation in naive T lymphocytes
R18 C30 C26 coref-ident NF-ATc/B and -C,NF-ATc/B and -C

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 9-24 protein_family_or_group denotes NF-ATc isoforms
T2 41-67 other_name denotes transcriptional properties
T3 87-100 cell_type denotes T lymphocytes
T4 106-126 protein_family_or_group denotes transcription factor
T5 127-133 protein_molecule denotes NF-ATc
T6 148-163 other_name denotes gene expression
T7 167-180 cell_type denotes T lymphocytes
T8 185-208 cell_type denotes embryonic cardiac cells
T9 278-307 other_name denotes splice/polyadenylation events
T10 371-384 cell_type denotes naive T cells
T11 399-405 protein_molecule denotes NF-ATc
T12 417-433 cell_type denotes effector T cells
T13 468-475 protein_molecule denotes isoform
T14 476-482 protein_molecule denotes NF-ATc
T15 513-523 protein_domain_or_region denotes C terminus
T16 546-547 protein_molecule denotes B
T17 552-553 protein_molecule denotes C
T18 560-585 peptide denotes extra C-terminal peptides
T19 656-697 protein_domain_or_region denotes strong N-terminal trans-activation domain
T20 699-704 protein_domain_or_region denotes TAD-A
T21 735-741 protein_molecule denotes NF-ATc
T22 752-758 protein_molecule denotes NF-ATc
T23 779-802 protein_domain_or_region denotes trans-activation domain
T24 804-809 protein_domain_or_region denotes TAD-B
T25 818-836 peptide denotes C-terminal peptide
T26 857-864 cell_type denotes T cells
T27 893-898 protein_domain_or_region denotes TAD-A
T28 928-933 protein_domain_or_region denotes TAD-B
T29 947-952 protein_domain_or_region denotes TAD-A
T30 954-959 protein_domain_or_region denotes TAD-B
T31 1001-1041 other_organic_compound denotes 12-O-tetradecanoyl 12-phorbol 13-acetate
T32 1053-1060 cell_type denotes T cells
T33 1074-1092 peptide denotes C-terminal peptide
T34 1104-1110 protein_molecule denotes NF-ATc
T35 1134-1156 other_name denotes transcriptional effect
T36 1221-1236 other_name denotes gene regulation
T37 1240-1245 cell_type denotes naive
T38 1246-1259 cell_type denotes T lymphocytes