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PubMed:10339482 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 0-16 protein denotes Protein kinase B
T2 18-23 protein denotes c-Akt
T3 26-55 protein denotes phosphatidylinositol 3-kinase
T4 61-66 protein denotes STAT5
T5 84-98 protein denotes erythropoietin
T6 100-103 protein denotes EPO
T7 108-129 cell_line denotes HCD57 erythroid cells
T8 166-211 cell_line denotes EPO-independent, apoptosis-resistant subclone
T9 213-229 cell_line denotes HCD57-SREI cells
T10 246-260 protein denotes erythropoietin
T11 262-265 protein denotes EPO
T12 271-287 protein denotes stem cell factor
T13 289-292 protein denotes SCF
T14 294-320 protein denotes activated protein kinase B
T15 322-329 protein denotes PKB/Akt
T16 334-369 cell_line denotes EPO-dependent HCD57 erythroid cells
T17 497-500 protein denotes EPO
T18 535-551 cell_line denotes HCD57-SREI cells
T19 582-589 protein denotes PKB/Akt
T20 591-597 protein denotes STAT5a
T21 603-609 protein denotes STAT5b
T22 630-651 cell_line denotes EPO-independent cells
T23 653-663 protein denotes PI3-kinase
T24 702-709 protein denotes PKB/Akt
T25 722-732 protein denotes PI3-kinase
T26 778-785 protein denotes PKB/Akt
T27 807-814 protein denotes PKB/Akt
T28 892-902 cell_line denotes HCD57-SREI
T29 907-918 cell_line denotes HCD57 cells
T30 951-958 protein denotes PKB/Akt
T31 969-976 protein denotes PKB/Akt
T32 1049-1060 cell_line denotes HCD57 cells
T33 1066-1069 protein denotes SCF
T34 1085-1092 protein denotes PKB/Akt
T35 1157-1171 protein denotes PKB/PI3-kinase
T36 1269-1274 protein denotes STAT5
T37 1336-1340 protein denotes JAK2
T38 1344-1348 protein denotes EPOR
T39 1391-1401 protein denotes PI3-kinase
T40 1401-1409 protein denotes /PKB/Akt
T41 1433-1465 cell_line denotes EPO-independent HCD57-SREI cells

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-231 Sentence denotes Protein kinase B (c-Akt), phosphatidylinositol 3-kinase, and STAT5 are activated by erythropoietin (EPO) in HCD57 erythroid cells but are constitutively active in an EPO-independent, apoptosis-resistant subclone (HCD57-SREI cells).
S2 232-370 Sentence denotes We found that erythropoietin (EPO) and stem cell factor (SCF) activated protein kinase B (PKB/Akt) in EPO-dependent HCD57 erythroid cells.
S3 371-553 Sentence denotes To better understand signals controlling proliferation and viability, erythroid cells that resist apoptosis in the absence of EPO were subcloned and characterized (HCD57-SREI cells).
S4 554-652 Sentence denotes Constitutive activations of PKB/Akt, STAT5a, and STAT5b were noted in these EPO-independent cells.
S5 653-824 Sentence denotes PI3-kinase activity was an upstream activator of PKB/Akt because the PI3-kinase inhibitor LY294002 blocked both constitutive PKB/Akt and factor-dependent PKB/Akt activity.
S6 825-1035 Sentence denotes The LY294002 study showed that proliferation and viability of both HCD57-SREI and HCD57 cells correlated with the activity of PKB/Akt; however, PKB/Akt activity alone did not protect these cells from apoptosis.
S7 1036-1129 Sentence denotes Treatment of HCD57 cells with SCF also activated PKB/Akt, but did not protect from apoptosis.
S8 1130-1255 Sentence denotes This result suggested that PKB/PI3-kinase activity is necessary but not sufficient to promote viability and/or proliferation.
S9 1256-1515 Sentence denotes Constitutive STAT5 activity, activated through an unknown pathway not including JAK2 or EPOR, may act in concert with the constitutive PI3-kinase/PKB/Akt pathway to protect the EPO-independent HCD57-SREI cells from apoptosis and promote limited proliferation.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 0-24 NP denotes Protein kinase B (c-Akt)
C2 108-129 NP denotes HCD57 erythroid cells
C3 163-230 NP denotes an EPO-independent, apoptosis-resistant subclone (HCD57-SREI cells)
C4 246-266 NP denotes erythropoietin (EPO)
C5 271-293 NP denotes stem cell factor (SCF)
C6 412-425 NP denotes proliferation
C7 430-439 NP denotes viability
C8 441-456 NP denotes erythroid cells
C9 457-461 NP denotes that
C10 469-478 NP denotes apoptosis
C11 497-500 NP denotes EPO
C12 582-589 NP denotes PKB/Akt
C13 624-651 NP denotes these EPO-independent cells
C14 702-709 NP denotes PKB/Akt
C15 887-918 NP denotes both HCD57-SREI and HCD57 cells
C17 951-959 NP denotes PKB/Akt;
C16 935-959 NP denotes the activity of PKB/Akt;
C18 969-991 NP denotes PKB/Akt activity alone
C19 1008-1019 NP denotes these cells
C20 1025-1034 NP denotes apoptosis
C21 1049-1060 NP denotes HCD57 cells
C22 1066-1069 NP denotes SCF
C23 1085-1092 NP denotes PKB/Akt
C24 1119-1128 NP denotes apoptosis
C25 1224-1233 NP denotes viability
C26 1241-1254 NP denotes proliferation
C27 1429-1465 NP denotes the EPO-independent HCD57-SREI cells
C28 1471-1480 NP denotes apoptosis
R1 C9 C8 coref-relat that,erythroid cells
R2 C11 C4 coref-ident EPO,erythropoietin (EPO)
R3 C12 C1 coref-ident PKB/Akt,Protein kinase B (c-Akt)
R4 C13 C3 coref-ident these EPO-independent cells,"an EPO-independent, apoptosis-resistant subclone (HCD57-SREI cells)"
R5 C14 C12 coref-ident PKB/Akt,PKB/Akt
R6 C17 C14 coref-ident PKB/Akt;,PKB/Akt
R7 C18 C16 coref-ident PKB/Akt activity alone,the activity of PKB/Akt;
R8 C19 C15 coref-ident these cells,both HCD57-SREI and HCD57 cells
R9 C20 C10 coref-ident apoptosis,apoptosis
R10 C21 C2 coref-ident HCD57 cells,HCD57 erythroid cells
R11 C22 C5 coref-ident SCF,stem cell factor (SCF)
R12 C23 C17 coref-ident PKB/Akt,PKB/Akt;
R13 C24 C20 coref-ident apoptosis,apoptosis
R14 C25 C7 coref-ident viability,viability
R15 C26 C6 coref-ident proliferation,proliferation
R16 C27 C13 coref-ident the EPO-independent HCD57-SREI cells,these EPO-independent cells
R17 C28 C24 coref-ident apoptosis,apoptosis

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-16 protein_molecule denotes Protein kinase B
T2 18-23 protein_molecule denotes c-Akt
T3 26-55 protein_molecule denotes phosphatidylinositol 3-kinase
T4 61-66 protein_molecule denotes STAT5
T5 84-98 protein_family_or_group denotes erythropoietin
T6 100-103 protein_family_or_group denotes EPO
T7 108-129 cell_line denotes HCD57 erythroid cells
T8 166-169 protein_family_or_group denotes EPO
T9 183-192 other_name denotes apoptosis
T10 213-229 cell_line denotes HCD57-SREI cells
T11 246-260 protein_molecule denotes erythropoietin
T12 262-265 protein_family_or_group denotes EPO
T13 271-287 protein_molecule denotes stem cell factor
T14 289-292 protein_molecule denotes SCF
T15 294-320 protein_molecule denotes activated protein kinase B
T16 322-329 protein_molecule denotes PKB/Akt
T17 334-337 protein_family_or_group denotes EPO
T18 412-425 other_name denotes proliferation
T19 469-478 other_name denotes apoptosis
T20 497-500 protein_family_or_group denotes EPO
T21 535-551 cell_line denotes HCD57-SREI cells
T22 582-589 protein_molecule denotes PKB/Akt
T23 591-597 protein_molecule denotes STAT5a
T24 603-609 protein_molecule denotes STAT5b
T25 630-633 protein_family_or_group denotes EPO
T26 653-663 protein_molecule denotes PI3-kinase
T27 702-709 protein_molecule denotes PKB/Akt
T28 722-732 protein_molecule denotes PI3-kinase
T29 743-751 other_organic_compound denotes LY294002
T30 765-777 other_name denotes constitutive
T31 778-785 protein_molecule denotes PKB/Akt
T32 790-806 other_name denotes factor-dependent
T33 807-814 protein_molecule denotes PKB/Akt
T34 829-843 other_name denotes LY294002 study
T35 892-902 cell_line denotes HCD57-SREI
T36 907-918 cell_line denotes HCD57 cells
T37 951-958 protein_molecule denotes PKB/Akt
T38 969-976 protein_molecule denotes PKB/Akt
T39 1025-1034 other_name denotes apoptosis
T40 1049-1060 cell_line denotes HCD57 cells
T41 1066-1069 protein_family_or_group denotes SCF
T42 1085-1092 protein_molecule denotes PKB/Akt
T43 1119-1128 other_name denotes apoptosis
T44 1157-1171 protein_molecule denotes PKB/PI3-kinase
T45 1256-1268 other_name denotes Constitutive
T46 1269-1274 protein_molecule denotes STAT5
T47 1336-1340 protein_molecule denotes JAK2
T48 1344-1348 protein_family_or_group denotes EPOR
T49 1378-1390 other_name denotes constitutive
T50 1391-1401 protein_molecule denotes PI3-kinase
T51 1401-1409 protein_molecule denotes /PKB/Akt
T52 1433-1436 protein_family_or_group denotes EPO
T53 1449-1465 cell_line denotes HCD57-SREI cells
T54 1471-1480 other_name denotes apoptosis
T55 1501-1514 other_name denotes proliferation