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PubMed:10329625 JSONTXT

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PMID_GLOBAL

Id Subject Object Predicate Lexical cue mondo_id
T1 890-893 DiseaseOrPhenotypicFeature denotes can 0012833

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 92-116 protein denotes helix-loop-helix protein
T2 117-120 protein denotes Id3
T3 124-152 cell_type denotes committed T cell progenitors
T4 177-180 protein denotes Id3
T5 221-272 protein denotes basic helix-loop-helix (bHLH) transcription factors
T6 277-321 cell_type denotes human CD34(+) hematopoietic progenitor cells
T7 346-387 DNA denotes T cell receptor (TCR) gene rearrangements
T8 416-432 cell_type denotes transduced cells
T9 438-473 cell_line denotes TCRalpha beta and gamma delta cells
T10 479-505 cell_line denotes fetal thymic organ culture
T11 507-511 cell_line denotes FTOC
T12 554-557 protein denotes Id3
T13 562-573 cell_type denotes progenitors
T14 594-617 DNA denotes TCR gene rearrangements
T15 619-630 cell_type denotes pre-T cells
T16 659-672 cell_line denotes TCRalpha beta
T17 686-708 cell_line denotes TCRgamma delta T cells
T18 723-726 protein denotes Id3
T19 798-813 RNA denotes pre-Talpha mRNA
T20 871-874 protein denotes Id3
T21 931-942 cell_type denotes pre-T cells
T22 948-983 cell_line denotes TCRalpha beta and gamma delta cells
T23 1007-1044 cell_type denotes cell surface CD4(-)CD8(-)CD3(-) cells
T24 1050-1070 DNA denotes rearranged TCR genes
T25 1086-1100 cell_line denotes Id3-transduced
T26 1114-1144 cell_line denotes control-transduced pre-T cells
T27 1151-1155 cell_line denotes FTOC
T28 1192-1206 cell_type denotes natural killer
T29 1208-1210 cell_type denotes NK
T30 1216-1227 cell_type denotes pre-T cells
T31 1257-1269 protein denotes bHLH factors

FSU-PRGE

Id Subject Object Predicate Lexical cue
T1 117-120 protein denotes Id3
T2 177-180 protein denotes Id3
T3 251-272 protein denotes transcription factors
T4 283-287 protein denotes CD34
T5 346-361 protein denotes T cell receptor
T6 363-366 protein denotes TCR
T7 438-467 protein denotes TCRalpha beta and gamma delta
T8 554-557 protein denotes Id3
T9 594-597 protein denotes TCR
T10 659-672 protein denotes TCRalpha beta
T11 686-700 protein denotes TCRgamma delta
T12 723-726 protein denotes Id3
T13 798-808 protein denotes pre-Talpha
T14 871-874 protein denotes Id3
T15 948-977 protein denotes TCRalpha beta and gamma delta
T16 1020-1023 protein denotes CD4
T17 1026-1029 protein denotes CD8
T18 1032-1035 protein denotes CD3
T19 1061-1064 protein denotes TCR
T20 1086-1089 protein denotes Id3

semrep-sample

Id Subject Object Predicate Lexical cue
E1-ti-1 0-10 cui:C0332453 denotes Disruption
E2-ti-1 14-19 cui:C0439095 denotes alpha
E3-ti-1 29-32 cui:C1518422 denotes not
E4-ti-1 42-47 entrez:5694,7528,28514 denotes delta
E5-ti-1 48-66 cui:C1515126 denotes T cell development
E6-ti-1 92-102 cui:C0282642 denotes helix-loop
E7-ti-1 109-116 cui:C0033684 denotes protein
E8-ti-1 117-120 entrez:3399 denotes Id3
E9-ti-1 124-140 cui:C0301868 denotes committed T cell
E1-ab-1 163-173 cui:C0185117 denotes expression
E2-ab-1 177-180 entrez:3399 denotes Id3
E3-ab-1 196-204 cui:C1516240 denotes capacity
E4-ab-1 221-272 cui:C0288972 denotes basic helix-loop-helix (bHLH) transcription factors
E5-ab-1 277-282 cui:C0020114 denotes human
E6-ab-1 283-287 cui:C1332710 denotes CD34
E7-ab-1 291-321 cui:C0018956 denotes hematopoietic progenitor cells
E8-ab-1 332-335 cui:C1518422 denotes not
E9-ab-1 346-387 cui:C0200916 denotes T cell receptor (TCR) gene rearrangements
E10-ab-1 397-408 cui:C1527148 denotes development
E11-ab-1 427-432 cui:C0007634 denotes cells
E12-ab-1 462-473 cui:C0524984 denotes delta cells
E13-ab-1 479-505 cui:C1517167 denotes fetal thymic organ culture
T1 208-215 INHIBITS denotes inhibit
T2 277-287 PART_OF denotes human CD34
T3 274-276 COEXISTS_WITH denotes in
T4 388-396 DISRUPTS denotes inhibits
T5 388-396 DISRUPTS denotes inhibits
E1-ab-2 554-557 entrez:3399 denotes Id3
E2-ab-2 584-593 cui:C1548602 denotes initiated
E3-ab-2 594-617 cui:C0200916 denotes TCR gene rearrangements
E4-ab-2 619-622 cui:C0740175 denotes pre
E5-ab-2 623-630 cui:C0039194 denotes T cells
E6-ab-2 642-653 cui:C1527148 denotes development
E7-ab-2 677-680 cui:C1518422 denotes not
E8-ab-2 695-708 cui:C0524984 denotes delta T cells
E1-ab-3 723-726 entrez:3399 denotes Id3
E2-ab-3 735-745 cui:C0185117 denotes expression
E3-ab-3 749-762 cui:C0034865 denotes recombination
E4-ab-3 763-773 cui:C1515877 denotes activating
E5-ab-3 774-779 cui:C0017337 denotes genes
E6-ab-3 798-813 cui:C0026661 denotes pre-Talpha mRNA
T6 784-797 INHIBITS denotes downregulates
E1-ab-4 842-850 cui:C0332149 denotes possible
E2-ab-4 851-861 cui:C0441712 denotes mechanisms
E3-ab-4 871-874 entrez:3399 denotes Id3
E4-ab-4 916-927 cui:C1527148 denotes development
E5-ab-4 931-934 cui:C0740175 denotes pre
E6-ab-4 935-942 cui:C0039194 denotes T cells
E7-ab-4 972-983 cui:C0524984 denotes delta cells
T7 909-915 AFFECTS denotes affect
T8 909-915 AFFECTS denotes affect
E1-ab-5 1007-1019 cui:C0699040 denotes cell surface
E2-ab-5 1020-1023 cui:C1332714 denotes CD4
E3-ab-5 1026-1029 cui:C1367471 denotes CD8
E4-ab-5 1039-1044 cui:C0007634 denotes cells
E5-ab-5 1061-1070 cui:C0524889 denotes TCR genes
E6-ab-5 1086-1089 entrez:3399 denotes Id3
E7-ab-5 1105-1108 cui:C1518422 denotes not
E8-ab-5 1114-1121 cui:C0243148 denotes control
E9-ab-5 1133-1136 cui:C0740175 denotes pre
E10-ab-5 1137-1144 cui:C0039194 denotes T cells
E11-ab-5 1151-1155 cui:C1517167 denotes FTOC
T9 1007-1023 PART_OF denotes cell surface CD4
T10 1045-1049 PART_OF denotes with
T11 1109-1113 LOCATION_OF denotes from
E1-ab-6 1163-1168 cui:C0007634 denotes cells
E2-ab-6 1173-1183 cui:C0871161 denotes properties
E3-ab-6 1192-1199 cui:C0205296 denotes natural
E4-ab-6 1200-1206 cui:C1336644 denotes killer
E5-ab-6 1216-1219 cui:C0740175 denotes pre
E6-ab-6 1220-1227 cui:C0039194 denotes T cells
E1-ab-7 1235-1243 cui:C0243095 denotes findings
E2-ab-7 1257-1261 cui:C1527178 denotes bHLH
E3-ab-7 1257-1261 cui:C0282642 denotes bHLH
E4-ab-7 1262-1269 cui:C1521761 denotes factors
E5-ab-7 1294-1312 cui:C1515126 denotes T cell development
E6-ab-7 1325-1327 cui:C0205296 denotes NK
E7-ab-7 1325-1327 cui:C1336644 denotes NK
E8-ab-7 1328-1341 cui:C0458003 denotes developmental
R1 E2-ab-1 T1 subjectOf Id3,inhibit
R2 E4-ab-1 T1 objectOf basic helix-loop-helix (bHLH) transcription factors,inhibit
R3 E6-ab-1 T2 subjectOf CD34,human CD34
R4 E5-ab-1 T2 objectOf human,human CD34
R5 E4-ab-1 T3 subjectOf basic helix-loop-helix (bHLH) transcription factors,in
R6 E6-ab-1 T3 objectOf CD34,in
R7 E6-ab-1 T4 subjectOf CD34,inhibits
R8 E11-ab-1 T4 objectOf cells,inhibits
R9 E6-ab-1 T5 subjectOf CD34,inhibits
R10 E12-ab-1 T5 objectOf delta cells,inhibits
R11 E1-ab-3 T6 subjectOf Id3,downregulates
R12 E6-ab-3 T6 objectOf pre-Talpha mRNA,downregulates
R13 E3-ab-4 T7 subjectOf Id3,affect
R14 E6-ab-4 T7 objectOf T cells,affect
R15 E3-ab-4 T8 subjectOf Id3,affect
R16 E7-ab-4 T8 objectOf delta cells,affect
R17 E2-ab-5 T9 subjectOf CD4,cell surface CD4
R18 E1-ab-5 T9 objectOf cell surface,cell surface CD4
R19 E5-ab-5 T10 subjectOf TCR genes,with
R20 E4-ab-5 T10 objectOf cells,with
R21 E10-ab-5 T11 subjectOf T cells,from
R22 E3-ab-5 T11 objectOf CD8,from

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-153 Sentence denotes Disruption of alpha beta but not of gamma delta T cell development by overexpression of the helix-loop-helix protein Id3 in committed T cell progenitors.
S2 154-513 Sentence denotes Enforced expression of Id3, which has the capacity to inhibit many basic helix-loop-helix (bHLH) transcription factors, in human CD34(+) hematopoietic progenitor cells that have not undergone T cell receptor (TCR) gene rearrangements inhibits development of the transduced cells into TCRalpha beta and gamma delta cells in a fetal thymic organ culture (FTOC).
S3 514-709 Sentence denotes Here we document that overexpression of Id3, in progenitors that have initiated TCR gene rearrangements (pre-T cells), inhibits development into TCRalpha beta but not into TCRgamma delta T cells.
S4 710-814 Sentence denotes Furthermore, Id3 impedes expression of recombination activating genes and downregulates pre-Talpha mRNA.
S5 815-984 Sentence denotes These observations suggest possible mechanisms by which Id3 overexpression can differentially affect development of pre-T cells into TCRalpha beta and gamma delta cells.
S6 985-1156 Sentence denotes We also observed that cell surface CD4(-)CD8(-)CD3(-) cells with rearranged TCR genes developed from Id3-transduced but not from control-transduced pre-T cells in an FTOC.
S7 1157-1228 Sentence denotes These cells had properties of both natural killer (NK) and pre-T cells.
S8 1229-1353 Sentence denotes These findings suggest that bHLH factors are required to control T cell development after the T/NK developmental checkpoint.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 88-120 NP denotes the helix-loop-helix protein Id3
C3 177-180 NP denotes Id3
C2 154-180 NP denotes Enforced expression of Id3
C4 182-187 NP denotes which
C5 277-321 NP denotes human CD34(+) hematopoietic progenitor cells
C6 322-326 NP denotes that
C7 346-387 NP denotes T cell receptor (TCR) gene rearrangements
C8 438-473 NP denotes TCRalpha beta and gamma delta cells
C9 477-512 NP denotes a fetal thymic organ culture (FTOC)
C11 554-557 NP denotes Id3
C10 536-557 NP denotes overexpression of Id3
C12 562-573 NP denotes progenitors
C13 574-578 NP denotes that
C14 594-631 NP denotes TCR gene rearrangements (pre-T cells)
C15 723-726 NP denotes Id3
C16 842-861 NP denotes possible mechanisms
C17 865-870 NP denotes which
C18 871-889 NP denotes Id3 overexpression
C19 931-942 NP denotes pre-T cells
C20 948-983 NP denotes TCRalpha beta and gamma delta cells
C21 1007-1070 NP denotes cell surface CD4(-)CD8(-)CD3(-) cells with rearranged TCR genes
C22 1148-1155 NP denotes an FTOC
C23 1157-1168 NP denotes These cells
R1 C3 C1 coref-ident Id3,the helix-loop-helix protein Id3
R2 C4 C2 coref-relat which,Enforced expression of Id3
R3 C6 C5 coref-relat that,human CD34(+) hematopoietic progenitor cells
R4 C11 C3 coref-ident Id3,Id3
R5 C13 C12 coref-relat that,progenitors
R6 C14 C7 coref-ident TCR gene rearrangements (pre-T cells),T cell receptor (TCR) gene rearrangements
R7 C15 C11 coref-ident Id3,Id3
R8 C17 C16 coref-pron which,possible mechanisms
R9 C18 C10 coref-ident Id3 overexpression,overexpression of Id3
R10 C19 C14 coref-ident pre-T cells,TCR gene rearrangements (pre-T cells)
R11 C20 C8 coref-ident TCRalpha beta and gamma delta cells,TCRalpha beta and gamma delta cells
R12 C22 C9 coref-ident an FTOC,a fetal thymic organ culture (FTOC)
R13 C23 C21 coref-ident These cells,cell surface CD4(-)CD8(-)CD3(-) cells with rearranged TCR genes

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 14-24 other_name denotes alpha beta
T2 36-66 other_name denotes gamma delta T cell development
T3 70-84 other_name denotes overexpression
T4 92-116 protein_family_or_group denotes helix-loop-helix protein
T5 117-120 protein_molecule denotes Id3
T6 124-152 cell_type denotes committed T cell progenitors
T7 177-180 protein_molecule denotes Id3
T8 221-272 protein_family_or_group denotes basic helix-loop-helix (bHLH) transcription factors
T9 277-321 cell_type denotes human CD34(+) hematopoietic progenitor cells
T10 346-361 protein_family_or_group denotes T cell receptor
T11 363-366 protein_family_or_group denotes TCR
T12 416-432 cell_type denotes transduced cells
T13 479-505 cell_line denotes fetal thymic organ culture
T14 507-511 cell_line denotes FTOC
T15 554-557 protein_molecule denotes Id3
T16 562-573 cell_type denotes progenitors
T17 594-597 protein_family_or_group denotes TCR
T18 619-630 cell_type denotes pre-T cells
T19 659-672 cell_line denotes TCRalpha beta
T20 686-708 cell_line denotes TCRgamma delta T cells
T21 723-726 protein_molecule denotes Id3
T22 798-813 RNA_molecule denotes pre-Talpha mRNA
T23 871-874 protein_molecule denotes Id3
T24 931-942 cell_type denotes pre-T cells
T25 1007-1044 cell_type denotes cell surface CD4(-)CD8(-)CD3(-) cells
T26 1050-1070 DNA_domain_or_region denotes rearranged TCR genes
T27 1086-1089 protein_molecule denotes Id3
T28 1114-1132 cell_line denotes control-transduced
T29 1133-1144 cell_type denotes pre-T cells
T30 1151-1155 cell_line denotes FTOC
T31 1192-1206 cell_type denotes natural killer
T32 1208-1210 cell_type denotes NK
T33 1216-1227 cell_type denotes pre-T cells
T34 1257-1269 protein_family_or_group denotes bHLH factors
T35 1294-1312 other_name denotes T cell development
T36 1323-1352 other_name denotes T/NK developmental checkpoint

metamap-sample

Id Subject Object Predicate Lexical cue
T1 1258-1262 C0282642 denotes HLH
T2 93-109 C0282642 denotes elix-loop-helix
T3 1221-1228 C0039194 denotes cells.
T4 1138-1145 C0039194 denotes cells
T5 624-631 C0039194 denotes cells)
T6 135-140 C0039194 denotes cell
T7 110-117 C0033684 denotes rotein
T8 37-67 C3159121 denotes amma delta T cell development
T9 563-574 C0870134 denotes rogenitors
T10 142-153 C0870134 denotes rogenitors.
T11 876-890 C1514559 denotes verexpression
T12 537-551 C1514559 denotes verexpression
T13 71-85 C1514559 denotes verexpression
T14 1-11 C0332453 denotes isruption
T15 1087-1090 C1415856 denotes d3-
T16 872-875 C1415856 denotes d3
T17 724-727 C1415856 denotes d3
T18 555-558 C1415856 denotes d3,
T19 178-181 C1415856 denotes d3,
T20 118-121 C1415856 denotes d3
T21 1106-1109 C1518422 denotes ot
T22 678-680 C1518422 denotes ot
T23 333-336 C1518422 denotes ot
T24 30-33 C1518422 denotes ot
T25 125-134 C1171947 denotes ommitted
T26 15-20 C2003941 denotes lpha
T27 21-25 C2004068 denotes eta
T28 949-962 C0085247 denotes CRalpha beta
T29 660-673 C0085247 denotes CRalpha beta
T30 439-451 C0085247 denotes CRalpha beta
T31 973-984 C0524984 denotes elta cells.
T32 463-474 C0524984 denotes elta cells
T33 634-642 C0018790 denotes nhibits
T34 209-216 C0018790 denotes nhibit
T35 389-397 C0018790 denotes nhibits
T36 278-283 C0086418 denotes uman
T37 1062-1070 C0524889 denotes CR genes
T38 822-834 C0700325 denotes bservations
T39 1217-1220 C0740175 denotes re-
T40 1134-1137 C0740175 denotes re-
T41 932-935 C0740175 denotes re-
T42 620-623 C0740175 denotes re-
T43 1343-1353 C1155874 denotes heckpoint.
T44 910-915 C0001721 denotes ffect
T45 1245-1252 C1705535 denotes uggest
T46 835-841 C1705535 denotes uggest
T47 750-762 C0034865 denotes ecombination
T48 1164-1169 C0007634 denotes ells
T49 1040-1045 C0007634 denotes ells
T50 1287-1294 C1550141 denotes ontrol
T51 1115-1122 C1550141 denotes ontrol-
T52 1152-1156 C1517167 denotes TOC.
T53 480-506 C1517167 denotes etal thymic organ culture
T54 736-746 C0185117 denotes xpression
T55 164-174 C0185117 denotes xpression
T56 967-972 C1552644 denotes amma
T57 457-462 C1552644 denotes amma
T58 1033-1036 C3542405 denotes D3(
T59 1027-1030 C3538720 denotes D8(
T60 523-530 C1301746 denotes ocument
T61 994-1002 C1441672 denotes bserved
T62 1275-1283 C1514873 denotes equired
T63 1284-1286 C1883351 denotes o
T64 1236-1244 C2607943 denotes indings
T65 284-288 C3538723 denotes D34(
T66 197-205 C1516240 denotes apacity
T67 1021-1024 C3541261 denotes D4(
T68 1263-1270 C1521761 denotes actors
T69 643-654 C0678723 denotes evelopment
T70 1174-1184 C0871161 denotes roperties
T71 852-862 C0441712 denotes echanisms
T72 1008-1020 C0699040 denotes ell surface
T73 1193-1207 C2709199 denotes atural killer
T74 1258-1262 C1527178 denotes HLH
T75 585-594 C1704686 denotes nitiated
T76 764-774 C1879547 denotes ctivating
T77 843-851 C2362652 denotes ossible