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PubMed:10329147 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 15-44 DNA denotes NFATp/AP-1 composite elements
T2 89-101 cell_type denotes immune cells
T3 103-121 DNA denotes Composite elements
T4 126-144 DNA denotes regulatory modules
T5 148-157 DNA denotes promoters
T6 161-170 DNA denotes enhancers
T7 234-255 protein denotes transcription factors
T8 283-331 DNA denotes nuclear factors of activated T-cell (NFAT) sites
T9 366-421 DNA denotes NFATp/c and an activating protein 1 (AP-1) binding site
T10 488-505 DNA denotes NFAT target genes
T11 568-591 DNA denotes NFAT composite elements
T12 638-663 DNA denotes transcription start sites
T13 712-735 DNA denotes NFAT composite elements
T14 792-826 DNA denotes T-cell-specific promoter sequences
T15 841-859 DNA denotes functional regions
T16 861-890 DNA denotes coding and intronic sequences
T17 919-928 DNA denotes promoters
T18 932-953 DNA denotes muscle-specific genes
T19 965-981 DNA denotes random sequences
T20 1028-1051 DNA denotes NFAT composite elements
T21 1055-1064 DNA denotes promoters
T22 1068-1082 DNA denotes cytokine genes
T23 1117-1126 DNA denotes promoters
T24 1140-1159 protein denotes AP-1 family members
T25 1161-1182 protein denotes Ca2+-binding proteins
T26 1248-1265 cell_type denotes activated T-cells
T27 1276-1288 cell_type denotes immune cells
T28 1361-1379 DNA denotes composite elements
T29 1417-1440 DNA denotes NFAT composite elements

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-102 Sentence denotes Recognition of NFATp/AP-1 composite elements within genes induced upon the activation of immune cells.
S2 103-256 Sentence denotes Composite elements are regulatory modules of promoters or enhancers that consist of binding sites of two different but synergizing transcription factors.
S3 257-422 Sentence denotes A well-studied example is nuclear factors of activated T-cell (NFAT) sites which are composite elements of a NFATp/c and an activating protein 1 (AP-1) binding site.
S4 423-736 Sentence denotes We have developed a computational approach to identify potential NFAT target genes which (a) comprises an improved method to scan for individual NFAT composite elements; (b) considers positional effects relative to transcription start sites; and (c) involves cluster analysis of potential NFAT composite elements.
S5 737-982 Sentence denotes All three steps progressively helpX?ed to discriminate T-cell-specific promoter sequences against other functional regions (coding and intronic sequences) of the same genes, against promoters of muscle-specific genes or against random sequences.
S6 983-1289 Sentence denotes Using this approach, we identified potential NFAT composite elements in promoters of cytokine genes and their receptors as well as in promoters of genes for AP-1 family members, Ca2+-binding proteins and some other components of the regulatory network operating in activated T-cells and other immune cells.
S7 1290-1388 Sentence denotes The method developed can be adapted to characterize and identify other composite elements as well.
S8 1389-1594 Sentence denotes The program for recognition NFAT composite elements is available through the World Wide Web (http://compel.bionet.nsc.ru/FunSite/CompelScan. html and http://transfac.gbf.de/dbsearch/funsitep/s _comp.html).

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 126-170 NP denotes regulatory modules of promoters or enhancers
C2 171-175 NP denotes that
C3 283-331 NP denotes nuclear factors of activated T-cell (NFAT) sites
C4 332-337 NP denotes which
C5 441-465 NP denotes a computational approach
C6 506-511 NP denotes which
C7 989-1002 NP denotes this approach
C8 1018-1082 NP denotes potential NFAT composite elements in promoters of cytokine genes
C9 1087-1092 NP denotes their
C10 1290-1310 NP denotes The method developed
R1 C2 C1 coref-relat that,regulatory modules of promoters or enhancers
R2 C4 C3 coref-relat which,nuclear factors of activated T-cell (NFAT) sites
R3 C6 C5 coref-relat which,a computational approach
R4 C7 C5 coref-ident this approach,a computational approach
R5 C9 C8 coref-pron their,potential NFAT composite elements in promoters of cytokine genes
R6 C10 C7 coref-ident The method developed,this approach

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 15-44 DNA_family_or_group denotes NFATp/AP-1 composite elements
T2 89-101 cell_type denotes immune cells
T3 103-121 DNA_family_or_group denotes Composite elements
T4 126-144 DNA_family_or_group denotes regulatory modules
T5 148-157 DNA_family_or_group denotes promoters
T6 161-170 DNA_family_or_group denotes enhancers
T7 234-255 protein_family_or_group denotes transcription factors
T8 283-331 DNA_domain_or_region denotes nuclear factors of activated T-cell (NFAT) sites
T9 488-505 DNA_domain_or_region denotes NFAT target genes
T10 568-591 DNA_family_or_group denotes NFAT composite elements
T11 638-663 DNA_domain_or_region denotes transcription start sites
T12 712-735 DNA_family_or_group denotes NFAT composite elements
T13 792-826 DNA_domain_or_region denotes T-cell-specific promoter sequences
T14 841-859 DNA_family_or_group denotes functional regions
T15 919-928 DNA_domain_or_region denotes promoters
T16 932-953 DNA_family_or_group denotes muscle-specific genes
T17 965-981 DNA_family_or_group denotes random sequences
T18 1028-1051 DNA_family_or_group denotes NFAT composite elements
T19 1055-1064 DNA_family_or_group denotes promoters
T20 1068-1082 DNA_family_or_group denotes cytokine genes
T21 1117-1126 DNA_family_or_group denotes promoters
T22 1140-1144 protein_molecule denotes AP-1
T23 1161-1182 protein_family_or_group denotes Ca2+-binding proteins
T24 1216-1234 other_name denotes regulatory network
T25 1248-1265 cell_type denotes activated T-cells
T26 1276-1288 cell_type denotes immune cells
T27 1361-1379 DNA_family_or_group denotes composite elements
T28 1417-1421 DNA_family_or_group denotes NFAT
T29 1422-1440 DNA_family_or_group denotes composite elements