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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 0-17 protein denotes Nuclear factor-90
T2 21-38 cell_type denotes activated T-cells
T3 42-61 RNA denotes double-stranded RNA
T4 100-144 protein denotes double-stranded RNA-dependent protein kinase
T5 146-149 protein denotes PKR
T6 318-322 protein denotes IL-2
T7 378-391 DNA denotes IL-2 enhancer
T8 405-440 DNA denotes antigen receptor response element 2
T9 442-448 DNA denotes ARRE-2
T10 480-486 DNA denotes ARRE-2
T11 536-547 protein denotes heterodimer
T12 615-619 protein denotes NF90
T13 638-642 protein denotes NF45
T14 675-686 protein denotes heterodimer
T15 709-713 protein denotes NF90
T16 823-842 RNA denotes double-stranded RNA
T17 910-914 protein denotes NF90
T18 937-956 RNA denotes double-stranded RNA
T19 971-975 protein denotes NF90
T20 1000-1019 RNA denotes double-stranded RNA
T21 1071-1115 protein denotes double-stranded RNA-dependent protein kinase
T22 1117-1120 protein denotes PKR
T23 1126-1130 protein denotes NF90
T24 1177-1184 cell_type denotes T-cells
T25 1198-1218 cell_line denotes nonimmune HeLa cells
T26 1223-1233 cell_line denotes HeLa cells

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-150 Sentence denotes Nuclear factor-90 of activated T-cells: A double-stranded RNA-binding protein and substrate for the double-stranded RNA-dependent protein kinase, PKR.
S2 151-324 Sentence denotes NFAT transcription factors play a central role in initiating T-cell activation through the induction of immediate-early T-cell specific genes including interleukin-2 (IL-2).
S3 325-450 Sentence denotes NFAT transcription factors bind to a sequence in the IL-2 enhancer known as the antigen receptor response element 2 (ARRE-2).
S4 451-653 Sentence denotes Multiple proteins exhibiting ARRE-2 binding activity have been isolated, including a heterodimer from stimulated T-cell nuclear extracts consisting of Mr = 90 000 (NF90) and Mr = 45 000 (NF45) subunits.
S5 654-843 Sentence denotes The subunits of this heterodimer have been cloned, and NF90 was found to encode a protein containing two domains that are predicted to form motifs capable of binding to double-stranded RNA.
S6 844-957 Sentence denotes Using in vitro translated polypeptides, we have demonstrated that NF90 specifically binds to double-stranded RNA.
S7 958-1121 Sentence denotes Furthermore, NF90 was phosphorylated in a double-stranded RNA-dependent manner likely by the interferon-induced, double-stranded RNA-dependent protein kinase, PKR.
S8 1122-1219 Sentence denotes The NF90 protein was found to be expressed not only in T-cells, but also in nonimmune HeLa cells.
S9 1220-1331 Sentence denotes In HeLa cells, the protein was almost exclusively localized to the ribosome salt wash fraction of cell lysates.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 96-144 NP denotes the double-stranded RNA-dependent protein kinase
C2 146-149 NP denotes PKR
C3 151-177 NP denotes NFAT transcription factors
C4 325-351 NP denotes NFAT transcription factors
C6 602-652 NP denotes Mr = 90 000 (NF90) and Mr = 45 000 (NF45) subunits
C5 534-652 NP denotes a heterodimer from stimulated T-cell nuclear extracts consisting of Mr = 90 000 (NF90) and Mr = 45 000 (NF45) subunits
C8 670-686 NP denotes this heterodimer
C7 654-686 NP denotes The subunits of this heterodimer
C9 709-713 NP denotes NF90
C10 755-766 NP denotes two domains
C11 767-771 NP denotes that
C12 823-842 NP denotes double-stranded RNA
C13 910-914 NP denotes NF90
C14 937-956 NP denotes double-stranded RNA
C15 971-975 NP denotes NF90
C16 1047-1115 NP denotes the interferon-induced, double-stranded RNA-dependent protein kinase
C17 1117-1120 NP denotes PKR
C18 1122-1138 NP denotes The NF90 protein
C19 1198-1218 NP denotes nonimmune HeLa cells
C20 1223-1233 NP denotes HeLa cells
C21 1235-1246 NP denotes the protein
R1 C2 C1 coref-appos PKR,the double-stranded RNA-dependent protein kinase
R2 C4 C3 coref-ident NFAT transcription factors,NFAT transcription factors
R3 C8 C5 coref-ident this heterodimer,a heterodimer from stimulated T-cell nuclear extracts consisting of Mr = 90 000 (NF90) and Mr = 45 000 (NF45) subunits
R4 C7 C6 coref-ident The subunits of this heterodimer,Mr = 90 000 (NF90) and Mr = 45 000 (NF45) subunits
R5 C11 C10 coref-relat that,two domains
R6 C13 C9 coref-ident NF90,NF90
R7 C14 C12 coref-ident double-stranded RNA,double-stranded RNA
R8 C15 C13 coref-ident NF90,NF90
R9 C16 C1 coref-ident "the interferon-induced, double-stranded RNA-dependent protein kinase",the double-stranded RNA-dependent protein kinase
R10 C17 C16 coref-appos PKR,"the interferon-induced, double-stranded RNA-dependent protein kinase"
R11 C18 C15 coref-ident The NF90 protein,NF90
R12 C20 C19 coref-ident HeLa cells,nonimmune HeLa cells
R13 C21 C18 coref-ident the protein,The NF90 protein

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-17 protein_molecule denotes Nuclear factor-90
T2 21-38 cell_type denotes activated T-cells
T3 42-61 RNA_family_or_group denotes double-stranded RNA
T4 100-144 protein_molecule denotes double-stranded RNA-dependent protein kinase
T5 146-149 protein_molecule denotes PKR
T6 318-322 protein_molecule denotes IL-2
T7 378-382 protein_molecule denotes IL-2
T8 405-440 DNA_domain_or_region denotes antigen receptor response element 2
T9 442-448 DNA_domain_or_region denotes ARRE-2
T10 480-486 DNA_domain_or_region denotes ARRE-2
T11 536-547 protein_complex denotes heterodimer
T12 553-587 cell_component denotes stimulated T-cell nuclear extracts
T13 615-619 protein_subunit denotes NF90
T14 638-642 protein_subunit denotes NF45
T15 675-686 protein_complex denotes heterodimer
T16 709-713 protein_subunit denotes NF90
T17 823-842 RNA_family_or_group denotes double-stranded RNA
T18 853-882 peptide denotes vitro translated polypeptides
T19 910-914 protein_subunit denotes NF90
T20 937-956 RNA_family_or_group denotes double-stranded RNA
T21 971-975 protein_subunit denotes NF90
T22 1000-1019 RNA_family_or_group denotes double-stranded RNA
T23 1071-1090 RNA_family_or_group denotes double-stranded RNA
T24 1117-1120 protein_molecule denotes PKR
T25 1126-1130 protein_subunit denotes NF90
T26 1177-1184 cell_type denotes T-cells
T27 1198-1218 cell_line denotes nonimmune HeLa cells
T28 1223-1233 cell_line denotes HeLa cells
T29 1287-1314 other_organic_compound denotes ribosome salt wash fraction
T30 1318-1330 other_organic_compound denotes cell lysates