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PubMed:10229837 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 0-9 protein denotes USF/c-Myc
T2 26-36 protein denotes Yin-Yang 1
T3 74-79 protein denotes CXCR4
T4 83-93 protein denotes coreceptor
T5 111-132 protein denotes Transcription factors
T6 133-137 protein denotes USF1
T7 142-146 protein denotes USF2
T8 183-210 DNA denotes HIV-1 long terminal repeats
T9 236-241 DNA denotes E box
T10 285-297 DNA denotes binding site
T11 302-307 protein denotes c-Myc
T12 313-330 protein denotes c-Myc oncoprotein
T13 408-418 protein denotes Yin-Yang 1
T14 420-423 protein denotes YY1
T15 481-505 DNA denotes cellular and viral genes
T16 650-659 protein denotes USF/c-Myc
T17 680-683 protein denotes YY1
T18 724-729 protein denotes CXCR4
T19 797-802 DNA denotes E box
T20 810-814 DNA denotes -260
T21 821-837 DNA denotes YY1 binding site
T22 845-849 DNA denotes -300
T23 866-890 DNA denotes transcription start site
T24 908-913 DNA denotes E box
T25 924-933 protein denotes USF/c-Myc
T26 960-965 protein denotes CXCR4
T27 1005-1021 DNA denotes YY1 binding site
T28 1062-1065 protein denotes YY1
T29 1111-1120 protein denotes USF/c-Myc
T30 1125-1128 protein denotes YY1

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-110 Sentence denotes USF/c-Myc enhances, while Yin-Yang 1 suppresses, the promoter activity of CXCR4, a coreceptor for HIV-1 entry.
S2 111-308 Sentence denotes Transcription factors USF1 and USF2 up-regulate gene expression (i.e. , HIV-1 long terminal repeats) via interaction with an E box on their target promoters, which is also a binding site for c-Myc.
S3 309-506 Sentence denotes The c-Myc oncoprotein is important in control of cellular proliferation and differentiation, while Yin-Yang 1 (YY1) has been shown to control the expression of a number of cellular and viral genes.
S4 507-621 Sentence denotes These two proteins physically interact with each other and mutually inhibit their respective biological functions.
S5 622-774 Sentence denotes In this study, we show that USF/c-Myc up-regulates, while YY1 down-regulates the promoter activity of CXCR4, a coreceptor for T cell-tropic HIV-1 entry.
S6 775-891 Sentence denotes We have identified an E box around -260 and a YY1 binding site around -300 relative to the transcription start site.
S7 892-1086 Sentence denotes Mutation of the E box abolished USF/c-Myc-mediated up-regulation of CXCR4 promoter activity, and mutation of the YY1 binding site was associated with unresponsiveness to YY1-mediated inhibition.
S8 1087-1259 Sentence denotes These data suggest that USF/c-Myc and YY1 may play an important role in the HIV-1-replicative cycle, by modulating both the viral fusion/entry process and viral expression.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 0-9 NP denotes USF/c-Myc
C2 26-36 NP denotes Yin-Yang 1
C4 74-79 NP denotes CXCR4
C5 81-109 NP denotes a coreceptor for HIV-1 entry
C3 49-109 NP denotes the promoter activity of CXCR4, a coreceptor for HIV-1 entry
C6 111-146 NP denotes Transcription factors USF1 and USF2
C8 245-250 NP denotes their
C7 233-267 NP denotes an E box on their target promoters
C9 269-274 NP denotes which
C10 302-307 NP denotes c-Myc
C11 309-330 NP denotes The c-Myc oncoprotein
C12 408-424 NP denotes Yin-Yang 1 (YY1)
C13 507-525 NP denotes These two proteins
C14 583-588 NP denotes their
C15 650-659 NP denotes USF/c-Myc
C16 680-683 NP denotes YY1
C18 724-729 NP denotes CXCR4
C19 731-773 NP denotes a coreceptor for T cell-tropic HIV-1 entry
C17 699-773 NP denotes the promoter activity of CXCR4, a coreceptor for T cell-tropic HIV-1 entry
C20 794-814 NP denotes an E box around -260
C21 819-890 NP denotes a YY1 binding site around -300 relative to the transcription start site
C22 904-913 NP denotes the E box
C23 960-983 NP denotes CXCR4 promoter activity
C24 1001-1021 NP denotes the YY1 binding site
C25 1111-1120 NP denotes USF/c-Myc
C26 1125-1128 NP denotes YY1
R1 C5 C4 coref-appos a coreceptor for HIV-1 entry,CXCR4
R2 C8 C6 coref-pron their,Transcription factors USF1 and USF2
R3 C9 C7 coref-relat which,an E box on their target promoters
R4 C11 C10 coref-ident The c-Myc oncoprotein,c-Myc
R5 C12 C2 coref-ident Yin-Yang 1 (YY1),Yin-Yang 1
R6 C14 C13 coref-pron their,These two proteins
R7 C15 C1 coref-ident USF/c-Myc,USF/c-Myc
R8 C16 C12 coref-ident YY1,Yin-Yang 1 (YY1)
R9 C18 C4 coref-ident CXCR4,CXCR4
R10 C19 C18 coref-appos a coreceptor for T cell-tropic HIV-1 entry,CXCR4
R11 C17 C3 coref-ident "the promoter activity of CXCR4, a coreceptor for T cell-tropic HIV-1 entry","the promoter activity of CXCR4, a coreceptor for HIV-1 entry"
R12 C22 C20 coref-ident the E box,an E box around -260
R13 C23 C17 coref-ident CXCR4 promoter activity,"the promoter activity of CXCR4, a coreceptor for T cell-tropic HIV-1 entry"
R14 C24 C21 coref-ident the YY1 binding site,a YY1 binding site around -300 relative to the transcription start site
R15 C25 C15 coref-ident USF/c-Myc,USF/c-Myc
R16 C26 C16 coref-ident YY1,YY1

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-9 protein_molecule denotes USF/c-Myc
T2 26-36 protein_molecule denotes Yin-Yang 1
T3 53-70 other_name denotes promoter activity
T4 74-79 protein_molecule denotes CXCR4
T5 83-93 protein_family_or_group denotes coreceptor
T6 98-103 virus denotes HIV-1
T7 111-132 protein_family_or_group denotes Transcription factors
T8 133-137 protein_molecule denotes USF1
T9 142-146 protein_molecule denotes USF2
T10 159-174 other_name denotes gene expression
T11 183-188 virus denotes HIV-1
T12 236-241 DNA_domain_or_region denotes E box
T13 285-297 DNA_domain_or_region denotes binding site
T14 302-307 protein_molecule denotes c-Myc
T15 313-318 protein_molecule denotes c-Myc
T16 358-380 other_name denotes cellular proliferation
T17 385-400 other_name denotes differentiation
T18 408-418 protein_molecule denotes Yin-Yang 1
T19 420-423 protein_molecule denotes YY1
T20 600-620 other_name denotes biological functions
T21 650-654 protein_molecule denotes USF/
T22 654-659 protein_molecule denotes c-Myc
T23 680-683 protein_molecule denotes YY1
T24 703-720 other_name denotes promoter activity
T25 724-729 protein_molecule denotes CXCR4
T26 748-761 other_name denotes T cell-tropic
T27 762-767 virus denotes HIV-1
T28 797-802 DNA_domain_or_region denotes E box
T29 810-814 DNA_domain_or_region denotes -260
T30 821-824 protein_molecule denotes YY1
T31 845-849 DNA_domain_or_region denotes -300
T32 866-890 DNA_domain_or_region denotes transcription start site
T33 908-913 DNA_domain_or_region denotes E box
T34 924-933 protein_molecule denotes USF/c-Myc
T35 960-965 protein_molecule denotes CXCR4
T36 966-983 other_name denotes promoter activity
T37 1005-1008 protein_molecule denotes YY1
T38 1062-1065 protein_molecule denotes YY1
T39 1111-1120 protein_molecule denotes USF/c-Myc
T40 1125-1128 protein_molecule denotes YY1
T41 1163-1168 virus denotes HIV-1
T42 1211-1237 other_name denotes viral fusion/entry process
T43 1242-1258 other_name denotes viral expression