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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 28-53 protein denotes interferon-gamma receptor
T2 57-74 cell_type denotes human eosinophils
T3 120-145 protein denotes interferon-gamma receptor
T4 147-157 protein denotes IFN-gammaR
T5 173-184 cell_type denotes eosinophils
T6 218-228 protein denotes IFN-gammaR
T7 232-243 cell_type denotes eosinophils
T8 320-328 protein denotes Jak/Stat
T9 357-368 cell_type denotes eosinophils
T10 375-385 protein denotes IFN-gammaR
T11 430-461 cell_type denotes Purified peripheral eosinophils
T12 483-492 protein denotes IFN-gamma
T13 551-561 protein denotes IFN-gammaR
T14 563-567 protein denotes Jak1
T15 569-573 protein denotes Jak2
T16 579-589 protein denotes Stat1alpha
T17 681-705 protein denotes Stat1alpha-DNA complexes
T18 740-749 protein denotes IFN-gamma
T19 753-770 cell_type denotes human eosinophils
T20 868-889 protein denotes IFN-gammaRalpha chain
T21 899-903 protein denotes Jak1
T22 905-909 protein denotes Jak2
T23 915-925 protein denotes Stat1alpha
T24 940-949 protein denotes IFN-gamma
T25 987-997 protein denotes Stat1alpha
T26 1036-1045 protein denotes IFN-gamma
T27 1054-1065 cell_type denotes eosinophils
T28 1113-1121 protein denotes Jak/Stat

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-75 Sentence denotes Signal transduction through interferon-gamma receptor on human eosinophils.
S2 76-185 Sentence denotes BACKGROUND: We reported on the constitutive interferon-gamma receptor (IFN-gammaR) expression on eosinophils.
S3 186-269 Sentence denotes But signal transduction through IFN-gammaR on eosinophils remains to be elucidated.
S4 270-420 Sentence denotes In this study, we examined the involvement of the Jak/Stat pathway in the signaling of eosinophils after IFN-gammaR conjugation by the ligand binding.
S5 421-522 Sentence denotes METHODS: Purified peripheral eosinophils were stimulated with IFN-gamma at 37 degrees C for 1-60 min.
S6 523-621 Sentence denotes Tyrosine phosphorylation of IFN-gammaR, Jak1, Jak2, and Stat1alpha was examined by immunoblotting.
S7 622-706 Sentence denotes Gel-shift assay was also examined to show the formation of Stat1alpha-DNA complexes.
S8 707-926 Sentence denotes RESULTS: We show that binding of IFN-gamma to human eosinophils initiated a series of events that resulted in the rapid tyrosine phosphorylation of not only the IFN-gammaRalpha chain but also Jak1, Jak2, and Stat1alpha.
S9 927-998 Sentence denotes In addition, IFN-gamma enhanced the DNA-binding activity of Stat1alpha.
S10 999-1155 Sentence denotes CONCLUSION: These data indicate that IFN-gamma affects eosinophils through its specific receptor and utilizes the Jak/Stat pathway as its mode of signaling.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C2 28-53 NP denotes interferon-gamma receptor
C3 57-74 NP denotes human eosinophils
C1 0-74 NP denotes Signal transduction through interferon-gamma receptor on human eosinophils
C4 173-184 NP denotes eosinophils
C6 218-228 NP denotes IFN-gammaR
C7 232-243 NP denotes eosinophils
C5 190-243 NP denotes signal transduction through IFN-gammaR on eosinophils
C8 316-336 NP denotes the Jak/Stat pathway
C9 357-368 NP denotes eosinophils
C10 483-492 NP denotes IFN-gamma
C11 551-561 NP denotes IFN-gammaR
C12 563-567 NP denotes Jak1
C13 569-573 NP denotes Jak2
C14 579-589 NP denotes Stat1alpha
C15 740-749 NP denotes IFN-gamma
C16 753-770 NP denotes human eosinophils
C17 781-799 NP denotes a series of events
C18 800-804 NP denotes that
C19 899-903 NP denotes Jak1
C20 905-909 NP denotes Jak2
C21 915-925 NP denotes Stat1alpha
C22 940-949 NP denotes IFN-gamma
C23 987-997 NP denotes Stat1alpha
C24 1036-1045 NP denotes IFN-gamma
C25 1054-1065 NP denotes eosinophils
C26 1074-1077 NP denotes its
C27 1109-1129 NP denotes the Jak/Stat pathway
C28 1133-1136 NP denotes its
R1 C4 C3 coref-ident eosinophils,human eosinophils
R2 C6 C2 coref-ident IFN-gammaR,interferon-gamma receptor
R3 C7 C4 coref-ident eosinophils,eosinophils
R4 C5 C1 coref-ident signal transduction through IFN-gammaR on eosinophils,Signal transduction through interferon-gamma receptor on human eosinophils
R5 C9 C7 coref-ident eosinophils,eosinophils
R6 C11 C6 coref-ident IFN-gammaR,IFN-gammaR
R7 C15 C10 coref-ident IFN-gamma,IFN-gamma
R8 C16 C9 coref-ident human eosinophils,eosinophils
R9 C18 C17 coref-relat that,a series of events
R10 C19 C12 coref-ident Jak1,Jak1
R11 C20 C13 coref-ident Jak2,Jak2
R12 C21 C14 coref-ident Stat1alpha,Stat1alpha
R13 C22 C15 coref-ident IFN-gamma,IFN-gamma
R14 C23 C21 coref-ident Stat1alpha,Stat1alpha
R15 C24 C22 coref-ident IFN-gamma,IFN-gamma
R16 C25 C16 coref-ident eosinophils,human eosinophils
R17 C26 C24 coref-pron its,IFN-gamma
R18 C27 C8 coref-ident the Jak/Stat pathway,the Jak/Stat pathway
R19 C28 C24 coref-pron its,IFN-gamma

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-19 other_name denotes Signal transduction
T2 28-53 protein_molecule denotes interferon-gamma receptor
T3 57-74 cell_type denotes human eosinophils
T4 120-145 protein_molecule denotes interferon-gamma receptor
T5 147-157 protein_molecule denotes IFN-gammaR
T6 173-184 cell_type denotes eosinophils
T7 190-209 other_name denotes signal transduction
T8 218-228 protein_molecule denotes IFN-gammaR
T9 232-243 cell_type denotes eosinophils
T10 320-328 protein_molecule denotes Jak/Stat
T11 357-368 cell_type denotes eosinophils
T12 375-385 protein_molecule denotes IFN-gammaR
T13 430-449 cell_type denotes Purified peripheral
T14 450-461 cell_type denotes eosinophils
T15 483-492 protein_molecule denotes IFN-gamma
T16 523-531 amino_acid_monomer denotes Tyrosine
T17 551-561 protein_molecule denotes IFN-gammaR
T18 563-567 protein_molecule denotes Jak1
T19 569-573 protein_molecule denotes Jak2
T20 579-589 protein_molecule denotes Stat1alpha
T21 606-620 other_name denotes immunoblotting
T22 622-637 other_name denotes Gel-shift assay
T23 681-691 protein_molecule denotes Stat1alpha
T24 740-749 protein_molecule denotes IFN-gamma
T25 753-758 cell_type denotes human
T26 759-770 cell_type denotes eosinophils
T27 827-835 amino_acid_monomer denotes tyrosine
T28 868-889 protein_subunit denotes IFN-gammaRalpha chain
T29 899-903 protein_molecule denotes Jak1
T30 905-909 protein_molecule denotes Jak2
T31 915-925 protein_molecule denotes Stat1alpha
T32 940-949 protein_molecule denotes IFN-gamma
T33 963-983 other_name denotes DNA-binding activity
T34 987-997 protein_molecule denotes Stat1alpha
T35 1036-1045 protein_molecule denotes IFN-gamma
T36 1054-1065 cell_type denotes eosinophils
T37 1113-1121 protein_molecule denotes Jak/Stat