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PubMed:10221658 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 0-5 protein denotes CIITA
T2 28-50 DNA denotes MHC class II promoters
T3 106-144 protein denotes promoter-bound multi-protein complexes
T4 168-180 cell_type denotes MHC class II
T5 256-270 protein denotes transactivator
T6 271-276 protein denotes CIITA
T7 338-355 DNA denotes MHC class II gene
T8 430-452 DNA denotes MHC class II promoters
T9 497-520 protein denotes multi-protein complexes
T10 522-525 protein denotes RFX
T11 527-531 protein denotes X2BP
T12 536-540 protein denotes NF-Y
T13 684-689 protein denotes CIITA
T14 693-712 cell_line denotes MHC class II- cells
T15 829-834 protein denotes CIITA
T16 923-956 protein denotes DNA-bound multi-protein complexes
T17 997-1002 protein denotes CIITA
T18 1086-1089 protein denotes RFX
T19 1091-1095 protein denotes X2BP
T20 1100-1104 protein denotes NF-Y
T21 1141-1146 protein denotes CIITA
T22 1196-1205 DNA denotes chromatin
T23 1254-1276 DNA denotes MHC class II promoters
T24 1294-1299 protein denotes CIITA
T25 1428-1433 protein denotes CIITA
T26 1477-1482 protein denotes CIITA
T27 1524-1546 DNA denotes MHC class II promoters
T28 1550-1563 cell_type denotes B lymphocytes

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-145 Sentence denotes CIITA-induced occupation of MHC class II promoters is independent of the cooperative stabilization of the promoter-bound multi-protein complexes.
S2 146-251 Sentence denotes Precise regulation of MHC class II expression plays a crucial role in the control of the immune response.
S3 252-415 Sentence denotes The transactivator CIITA behaves as a master controller of constitutive and inducible MHC class II gene activation, but its exact mechanism of action is not known.
S4 416-542 Sentence denotes Activation of MHC class II promoters requires binding of at least three distinct multi-protein complexes (RFX, X2BP and NF-Y).
S5 543-651 Sentence denotes It is known that the stability of this binding results from cooperative interactions between these proteins.
S6 652-769 Sentence denotes We show here that expression of CIITA in MHC class II- cells triggers occupation of the promoters by these complexes.
S7 770-957 Sentence denotes This observation raised the possibility that the effect of CIITA on promoter occupation is mediated by an effect on the cooperative stabilization of the DNA-bound multi-protein complexes.
S8 958-1105 Sentence denotes We show, however, that the presence of CIITA does not affect the stability of the higher-order protein complex formed on DNA by RFX, X2BP and NF-Y.
S9 1106-1277 Sentence denotes This suggests other mechanisms for CIITA-induced promoter occupancy, such as an effect on chromatin structure leading to increased accessibility of MHC class II promoters.
S10 1278-1386 Sentence denotes This ability of CIITA to facilitate promoter occupation is undissociable from its transactivation potential.
S11 1387-1564 Sentence denotes Finally, we conclude that this effect of CIITA is cell-type specific, since expression of CIITA is not required for normal occupation of MHC class II promoters in B lymphocytes.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 28-50 NP denotes MHC class II promoters
C2 252-276 NP denotes The transactivator CIITA
C3 372-375 NP denotes its
C4 430-452 NP denotes MHC class II promoters
C6 473-541 NP denotes at least three distinct multi-protein complexes (RFX, X2BP and NF-Y)
C5 462-541 NP denotes binding of at least three distinct multi-protein complexes (RFX, X2BP and NF-Y)
C7 577-589 NP denotes this binding
C8 636-650 NP denotes these proteins
C9 684-689 NP denotes CIITA
C10 736-749 NP denotes the promoters
C11 753-768 NP denotes these complexes
C12 794-809 NP denotes the possibility
C13 810-814 NP denotes that
C14 829-834 NP denotes CIITA
C15 838-857 NP denotes promoter occupation
C16 997-1002 NP denotes CIITA
C17 1086-1104 NP denotes RFX, X2BP and NF-Y
C18 1254-1276 NP denotes MHC class II promoters
C19 1294-1299 NP denotes CIITA
C20 1314-1333 NP denotes promoter occupation
C21 1356-1359 NP denotes its
C22 1428-1433 NP denotes CIITA
C23 1477-1482 NP denotes CIITA
C24 1524-1546 NP denotes MHC class II promoters
R1 C3 C2 coref-pron its,The transactivator CIITA
R2 C4 C1 coref-ident MHC class II promoters,MHC class II promoters
R3 C7 C5 coref-ident this binding,"binding of at least three distinct multi-protein complexes (RFX, X2BP and NF-Y)"
R4 C8 C6 coref-ident these proteins,"at least three distinct multi-protein complexes (RFX, X2BP and NF-Y)"
R5 C9 C2 coref-ident CIITA,The transactivator CIITA
R6 C10 C4 coref-ident the promoters,MHC class II promoters
R7 C11 C8 coref-ident these complexes,these proteins
R8 C13 C12 coref-relat that,the possibility
R9 C14 C9 coref-ident CIITA,CIITA
R10 C16 C14 coref-ident CIITA,CIITA
R11 C17 C11 coref-ident "RFX, X2BP and NF-Y",these complexes
R12 C18 C10 coref-ident MHC class II promoters,the promoters
R13 C19 C16 coref-ident CIITA,CIITA
R14 C20 C15 coref-ident promoter occupation,promoter occupation
R15 C21 C19 coref-pron its,CIITA
R16 C22 C19 coref-ident CIITA,CIITA
R17 C23 C22 coref-ident CIITA,CIITA
R18 C24 C18 coref-ident MHC class II promoters,MHC class II promoters

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-5 protein_molecule denotes CIITA
T2 28-40 cell_type denotes MHC class II
T3 106-144 protein_complex denotes promoter-bound multi-protein complexes
T4 168-180 cell_type denotes MHC class II
T5 235-250 other_name denotes immune response
T6 256-270 protein_family_or_group denotes transactivator
T7 271-276 protein_molecule denotes CIITA
T8 338-350 cell_type denotes MHC class II
T9 430-442 cell_type denotes MHC class II
T10 497-520 protein_complex denotes multi-protein complexes
T11 522-525 protein_complex denotes RFX
T12 527-531 protein_complex denotes X2BP
T13 536-540 protein_complex denotes NF-Y
T14 684-689 protein_molecule denotes CIITA
T15 693-705 cell_type denotes MHC class II
T16 829-834 protein_molecule denotes CIITA
T17 838-857 other_name denotes promoter occupation
T18 923-956 protein_complex denotes DNA-bound multi-protein complexes
T19 997-1002 protein_molecule denotes CIITA
T20 1086-1089 protein_complex denotes RFX
T21 1091-1095 protein_complex denotes X2BP
T22 1100-1104 protein_complex denotes NF-Y
T23 1141-1146 protein_molecule denotes CIITA
T24 1196-1205 DNA_molecule denotes chromatin
T25 1254-1266 cell_type denotes MHC class II
T26 1294-1299 protein_molecule denotes CIITA
T27 1428-1433 protein_molecule denotes CIITA
T28 1477-1482 protein_molecule denotes CIITA
T29 1524-1536 cell_type denotes MHC class II
T30 1550-1563 cell_type denotes B lymphocytes