PubMed:10206952
Annnotations
GGDB-2020
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 57-66 | https://acgg.asia/db/ggdb/info/gg053 | denotes | ST3Gal VI |
| T2 | 259-268 | https://acgg.asia/db/ggdb/info/gg053 | denotes | ST3Gal VI |
| T3 | 419-428 | https://acgg.asia/db/ggdb/info/gg053 | denotes | ST3Gal VI |
| T4 | 638-648 | https://acgg.asia/db/ggdb/info/gg050 | denotes | ST3Gal III |
| T5 | 650-659 | https://acgg.asia/db/ggdb/info/gg051 | denotes | ST3Gal IV |
| T6 | 665-673 | https://acgg.asia/db/ggdb/info/gg052 | denotes | ST3Gal V |
| T7 | 747-756 | https://acgg.asia/db/ggdb/info/gg053 | denotes | ST3Gal VI |
| T8 | 961-971 | https://acgg.asia/db/ggdb/info/gg050 | denotes | ST3Gal III |
| T9 | 976-985 | https://acgg.asia/db/ggdb/info/gg051 | denotes | ST3Gal IV |
| T10 | 1348-1355 | https://acgg.asia/db/ggdb/info/gg004 | denotes | Lewis X |
| T11 | 1348-1355 | https://acgg.asia/db/ggdb/info/gg005 | denotes | Lewis X |
| T12 | 1348-1355 | https://acgg.asia/db/ggdb/info/gg006 | denotes | Lewis X |
| T13 | 1348-1355 | https://acgg.asia/db/ggdb/info/gg007 | denotes | Lewis X |
| T14 | 1348-1355 | https://acgg.asia/db/ggdb/info/gg008 | denotes | Lewis X |
| T15 | 1348-1355 | https://acgg.asia/db/ggdb/info/gg003 | denotes | Lewis X |
ggdb-test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 57-66 | https://acgg.asia/db/ggdb/info/gg053 | denotes | ST3Gal VI |
| T2 | 259-268 | https://acgg.asia/db/ggdb/info/gg053 | denotes | ST3Gal VI |
| T3 | 419-428 | https://acgg.asia/db/ggdb/info/gg053 | denotes | ST3Gal VI |
| T4 | 638-648 | https://acgg.asia/db/ggdb/info/gg050 | denotes | ST3Gal III |
| T5 | 650-659 | https://acgg.asia/db/ggdb/info/gg051 | denotes | ST3Gal IV |
| T6 | 665-673 | https://acgg.asia/db/ggdb/info/gg052 | denotes | ST3Gal V |
| T7 | 747-756 | https://acgg.asia/db/ggdb/info/gg053 | denotes | ST3Gal VI |
| T8 | 961-971 | https://acgg.asia/db/ggdb/info/gg050 | denotes | ST3Gal III |
| T9 | 976-985 | https://acgg.asia/db/ggdb/info/gg051 | denotes | ST3Gal IV |
| T10 | 1348-1355 | https://acgg.asia/db/ggdb/info/gg003 | denotes | Lewis X |
| T11 | 1348-1355 | https://acgg.asia/db/ggdb/info/gg004 | denotes | Lewis X |
| T12 | 1348-1355 | https://acgg.asia/db/ggdb/info/gg005 | denotes | Lewis X |
| T13 | 1348-1355 | https://acgg.asia/db/ggdb/info/gg006 | denotes | Lewis X |
| T14 | 1348-1355 | https://acgg.asia/db/ggdb/info/gg007 | denotes | Lewis X |
| T15 | 1348-1355 | https://acgg.asia/db/ggdb/info/gg008 | denotes | Lewis X |
GlyCosmos6-Glycan-Motif-Image
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 1099-1124 | Glycan_Motif | denotes | neolactotetraosylceramide | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G58896AZ |
| T2 | 1163-1185 | Glycan_Motif | denotes | lactotetraosylceramide | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00049MO |
| T3 | 1187-1203 | Glycan_Motif | denotes | lactosylceramide | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G84224TW|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G74621DY|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G20420WT |
| T6 | 1208-1218 | Glycan_Motif | denotes | asialo-GM1 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G21856LC|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00407UJ |
| T8 | 1215-1218 | Glycan_Motif | denotes | GM1 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G48558GR|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G46613JI |
| T10 | 1304-1324 | Glycan_Motif | denotes | sialyl-paragloboside | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G83513YI |
| T11 | 1311-1324 | Glycan_Motif | denotes | paragloboside | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G58896AZ|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G48059CD|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G40585SO |
| T14 | 1341-1355 | Glycan_Motif | denotes | sialyl-Lewis X | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00054MO |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-148 | Sentence | denotes | Molecular cloning of a novel alpha2,3-sialyltransferase (ST3Gal VI) that sialylates type II lactosamine structures on glycoproteins and glycolipids. |
| T2 | 149-402 | Sentence | denotes | A novel member of the human CMP-NeuAc:beta-galactoside alpha2, 3-sialyltransferase (ST) subfamily, designated ST3Gal VI, was identified based on BLAST analysis of expressed sequence tags, and a cDNA clone was isolated from a human melanoma line library. |
| T3 | 403-707 | Sentence | denotes | The sequence of ST3Gal VI encoded a type II membrane protein with 2 amino acids of cytoplasmic domain, 32 amino acids of transmembrane region, and a large catalytic domain with 297 amino acids; and showed homology to previously cloned ST3Gal III, ST3Gal IV, and ST3Gal V at 34, 38, and 33%, respectively. |
| T4 | 708-945 | Sentence | denotes | Extracts from L cells transfected with ST3Gal VI cDNA in a expression vector and a fusion protein with protein A showed an enzyme activity of alpha2, 3-sialyltransferase toward Galbeta1,4GlcNAc structure on glycoproteins and glycolipids. |
| T5 | 946-1219 | Sentence | denotes | In contrast to ST3Gal III and ST3Gal IV, this enzyme exhibited restricted substrate specificity, i.e. it utilized Galbeta1,4GlcNAc on glycoproteins, and neolactotetraosylceramide and neolactohexaosylceramide, but not lactotetraosylceramide, lactosylceramide, or asialo-GM1. |
| T6 | 1220-1368 | Sentence | denotes | Consequently, these data indicated that this enzyme is involved in the synthesis of sialyl-paragloboside, a precursor of sialyl-Lewis X determinant. |
GlyCosmos6-Glycan-Motif-Structure
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 1099-1124 | https://glytoucan.org/Structures/Glycans/G58896AZ | denotes | neolactotetraosylceramide |
| T2 | 1163-1185 | https://glytoucan.org/Structures/Glycans/G00049MO | denotes | lactotetraosylceramide |
| T3 | 1187-1203 | https://glytoucan.org/Structures/Glycans/G20420WT | denotes | lactosylceramide |
| T4 | 1187-1203 | https://glytoucan.org/Structures/Glycans/G74621DY | denotes | lactosylceramide |
| T5 | 1187-1203 | https://glytoucan.org/Structures/Glycans/G84224TW | denotes | lactosylceramide |
| T6 | 1208-1218 | https://glytoucan.org/Structures/Glycans/G00407UJ | denotes | asialo-GM1 |
| T7 | 1208-1218 | https://glytoucan.org/Structures/Glycans/G21856LC | denotes | asialo-GM1 |
| T8 | 1215-1218 | https://glytoucan.org/Structures/Glycans/G46613JI | denotes | GM1 |
| T9 | 1215-1218 | https://glytoucan.org/Structures/Glycans/G48558GR | denotes | GM1 |
| T10 | 1304-1324 | https://glytoucan.org/Structures/Glycans/G83513YI | denotes | sialyl-paragloboside |
| T11 | 1311-1324 | https://glytoucan.org/Structures/Glycans/G40585SO | denotes | paragloboside |
| T12 | 1311-1324 | https://glytoucan.org/Structures/Glycans/G48059CD | denotes | paragloboside |
| T13 | 1311-1324 | https://glytoucan.org/Structures/Glycans/G58896AZ | denotes | paragloboside |
| T14 | 1341-1355 | https://glytoucan.org/Structures/Glycans/G00054MO | denotes | sialyl-Lewis X |
| T15 | 1348-1355 | https://glytoucan.org/Structures/Glycans/G00051MO | denotes | Lewis X |
Glycosmos6-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 1163-1185 | http://www.glycoepitope.jp/epitopes/EP0114 | denotes | lactotetraosylceramide |
| T2 | 1187-1203 | http://www.glycoepitope.jp/epitopes/EP0078 | denotes | lactosylceramide |
| T3 | 1215-1218 | http://www.glycoepitope.jp/epitopes/EP0050 | denotes | GM1 |
| T4 | 1311-1324 | http://www.glycoepitope.jp/epitopes/EP0075 | denotes | paragloboside |
| T5 | 1341-1355 | http://www.glycoepitope.jp/epitopes/EP0012 | denotes | sialyl-Lewis X |
| T6 | 1348-1355 | http://www.glycoepitope.jp/epitopes/EP0011 | denotes | Lewis X |
glycogenes
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-GlycoGenes20190927-B_T1 | 57-66 | https://acgg.asia/db/ggdb/info/gg053 | denotes | ST3Gal VI |
| PD-GlycoGenes20190927-B_T2 | 89-91 | https://acgg.asia/db/ggdb/info/gg111 | denotes | II |
| PD-GlycoGenes20190927-B_T3 | 248-258 | url | denotes | designated |
| PD-GlycoGenes20190927-B_T4 | 259-268 | https://acgg.asia/db/ggdb/info/gg053 | denotes | ST3Gal VI |
| PD-GlycoGenes20190927-B_T5 | 419-428 | https://acgg.asia/db/ggdb/info/gg053 | denotes | ST3Gal VI |
| PD-GlycoGenes20190927-B_T6 | 444-446 | https://acgg.asia/db/ggdb/info/gg111 | denotes | II |
| PD-GlycoGenes20190927-B_T7 | 552-557 | https://acgg.asia/db/ggdb/info/gg171 | denotes | large |
| PD-GlycoGenes20190927-B_T8 | 638-648 | https://acgg.asia/db/ggdb/info/gg050 | denotes | ST3Gal III |
| PD-GlycoGenes20190927-B_T9 | 650-659 | https://acgg.asia/db/ggdb/info/gg051 | denotes | ST3Gal IV |
| PD-GlycoGenes20190927-B_T10 | 665-673 | https://acgg.asia/db/ggdb/info/gg052 | denotes | ST3Gal V |
| PD-GlycoGenes20190927-B_T11 | 747-756 | https://acgg.asia/db/ggdb/info/gg053 | denotes | ST3Gal VI |
| PD-GlycoGenes20190927-B_T12 | 961-971 | https://acgg.asia/db/ggdb/info/gg050 | denotes | ST3Gal III |
| PD-GlycoGenes20190927-B_T13 | 976-985 | https://acgg.asia/db/ggdb/info/gg051 | denotes | ST3Gal IV |
PubmedHPO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 380-388 | HP_0002861 | denotes | melanoma |
HP-phenotype
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 380-388 | Phenotype | denotes | melanoma | HP:0002861 |
mondo_disease
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 380-388 | Disease | denotes | melanoma | http://purl.obolibrary.org/obo/MONDO_0005105 |
Glycan-GlyCosmos
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 1163-1185 | Glycan | denotes | lactotetraosylceramide | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00049MO |
| T2 | 1187-1203 | Glycan | denotes | lactosylceramide | https://api.glycosmos.org/wurcs2image/latest/png/binary/G84224TW |
| T3 | 1215-1218 | Glycan | denotes | GM1 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G48558GR |
| T4 | 1311-1324 | Glycan | denotes | paragloboside | https://api.glycosmos.org/wurcs2image/latest/png/binary/G58896AZ |
| T5 | 1348-1355 | Glycan | denotes | Lewis X | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00051MO |
GlyCosmos-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 1163-1185 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | lactotetraosylceramide | http://www.glycoepitope.jp/epitopes/EP0114 |
| T2 | 1187-1203 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | lactosylceramide | http://www.glycoepitope.jp/epitopes/EP0078 |
| T3 | 1215-1218 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | GM1 | http://www.glycoepitope.jp/epitopes/EP0050 |
| T4 | 1311-1324 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | paragloboside | http://www.glycoepitope.jp/epitopes/EP0075 |
| T5 | 1341-1355 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | sialyl-Lewis X | http://www.glycoepitope.jp/epitopes/EP0012 |
GlyCosmos15-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 380-388 | Phenotype | denotes | melanoma | HP:0002861 |
GlyCosmos15-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 380-388 | Disease | denotes | melanoma | http://purl.obolibrary.org/obo/MONDO_0005105 |
GlyCosmos15-NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 171-176 | OrganismTaxon | denotes | human | 9606 |
| T2 | 374-379 | OrganismTaxon | denotes | human | 9606 |
GlyCosmos15-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 447-455 | Body_part | denotes | membrane | http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158 |
| T4 | 486-497 | Body_part | denotes | cytoplasmic | http://purl.obolibrary.org/obo/GO_0005737 |
| T5 | 524-537 | Body_part | denotes | transmembrane | http://purl.obolibrary.org/obo/GO_0016020 |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-148 | Sentence | denotes | Molecular cloning of a novel alpha2,3-sialyltransferase (ST3Gal VI) that sialylates type II lactosamine structures on glycoproteins and glycolipids. |
| T2 | 149-402 | Sentence | denotes | A novel member of the human CMP-NeuAc:beta-galactoside alpha2, 3-sialyltransferase (ST) subfamily, designated ST3Gal VI, was identified based on BLAST analysis of expressed sequence tags, and a cDNA clone was isolated from a human melanoma line library. |
| T3 | 403-707 | Sentence | denotes | The sequence of ST3Gal VI encoded a type II membrane protein with 2 amino acids of cytoplasmic domain, 32 amino acids of transmembrane region, and a large catalytic domain with 297 amino acids; and showed homology to previously cloned ST3Gal III, ST3Gal IV, and ST3Gal V at 34, 38, and 33%, respectively. |
| T4 | 708-945 | Sentence | denotes | Extracts from L cells transfected with ST3Gal VI cDNA in a expression vector and a fusion protein with protein A showed an enzyme activity of alpha2, 3-sialyltransferase toward Galbeta1,4GlcNAc structure on glycoproteins and glycolipids. |
| T5 | 946-1219 | Sentence | denotes | In contrast to ST3Gal III and ST3Gal IV, this enzyme exhibited restricted substrate specificity, i.e. it utilized Galbeta1,4GlcNAc on glycoproteins, and neolactotetraosylceramide and neolactohexaosylceramide, but not lactotetraosylceramide, lactosylceramide, or asialo-GM1. |
| T6 | 1220-1368 | Sentence | denotes | Consequently, these data indicated that this enzyme is involved in the synthesis of sialyl-paragloboside, a precursor of sialyl-Lewis X determinant. |
GlyCosmos15-Sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-148 | Sentence | denotes | Molecular cloning of a novel alpha2,3-sialyltransferase (ST3Gal VI) that sialylates type II lactosamine structures on glycoproteins and glycolipids. |
| T2 | 149-402 | Sentence | denotes | A novel member of the human CMP-NeuAc:beta-galactoside alpha2, 3-sialyltransferase (ST) subfamily, designated ST3Gal VI, was identified based on BLAST analysis of expressed sequence tags, and a cDNA clone was isolated from a human melanoma line library. |
| T3 | 403-707 | Sentence | denotes | The sequence of ST3Gal VI encoded a type II membrane protein with 2 amino acids of cytoplasmic domain, 32 amino acids of transmembrane region, and a large catalytic domain with 297 amino acids; and showed homology to previously cloned ST3Gal III, ST3Gal IV, and ST3Gal V at 34, 38, and 33%, respectively. |
| T4 | 708-945 | Sentence | denotes | Extracts from L cells transfected with ST3Gal VI cDNA in a expression vector and a fusion protein with protein A showed an enzyme activity of alpha2, 3-sialyltransferase toward Galbeta1,4GlcNAc structure on glycoproteins and glycolipids. |
| T5 | 946-1219 | Sentence | denotes | In contrast to ST3Gal III and ST3Gal IV, this enzyme exhibited restricted substrate specificity, i.e. it utilized Galbeta1,4GlcNAc on glycoproteins, and neolactotetraosylceramide and neolactohexaosylceramide, but not lactotetraosylceramide, lactosylceramide, or asialo-GM1. |
| T6 | 1220-1368 | Sentence | denotes | Consequently, these data indicated that this enzyme is involved in the synthesis of sialyl-paragloboside, a precursor of sialyl-Lewis X determinant. |
GlyCosmos15-Glycan
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 1163-1185 | Glycan | denotes | lactotetraosylceramide | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00049MO |
| T2 | 1187-1203 | Glycan | denotes | lactosylceramide | https://api.glycosmos.org/wurcs2image/latest/png/binary/G84224TW |
| T3 | 1215-1218 | Glycan | denotes | GM1 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G48558GR |
| T4 | 1311-1324 | Glycan | denotes | paragloboside | https://api.glycosmos.org/wurcs2image/latest/png/binary/G58896AZ |
| T5 | 1348-1355 | Glycan | denotes | Lewis X | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00051MO |
GlyCosmos15-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 1163-1185 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | lactotetraosylceramide | http://www.glycoepitope.jp/epitopes/EP0114 |
| T2 | 1187-1203 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | lactosylceramide | http://www.glycoepitope.jp/epitopes/EP0078 |
| T3 | 1215-1218 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | GM1 | http://www.glycoepitope.jp/epitopes/EP0050 |
| T4 | 1311-1324 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | paragloboside | http://www.glycoepitope.jp/epitopes/EP0075 |
| T5 | 1341-1355 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | sialyl-Lewis X | http://www.glycoepitope.jp/epitopes/EP0012 |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 171-176 | OrganismTaxon | denotes | human | 9606 |
| T2 | 374-379 | OrganismTaxon | denotes | human | 9606 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 447-455 | Body_part | denotes | membrane | http://purl.obolibrary.org/obo/GO_0016020|http://purl.obolibrary.org/obo/UBERON_0000094|http://purl.obolibrary.org/obo/UBERON_0000158 |
| T4 | 486-497 | Body_part | denotes | cytoplasmic | http://purl.obolibrary.org/obo/GO_0005737 |
| T5 | 524-537 | Body_part | denotes | transmembrane | http://purl.obolibrary.org/obo/GO_0016020 |