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PubMed:10200294 JSONTXT

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PMID_GLOBAL

Id Subject Object Predicate Lexical cue mondo_id
T1 67-72 DiseaseOrPhenotypicFeature denotes tumor 0005070
T2 209-212 DiseaseOrPhenotypicFeature denotes LPS 0019508
T3 288-293 DiseaseOrPhenotypicFeature denotes tumor 0005070
T4 701-704 DiseaseOrPhenotypicFeature denotes LPS 0019508
T5 1252-1255 DiseaseOrPhenotypicFeature denotes LPS 0019508
T6 1299-1302 DiseaseOrPhenotypicFeature denotes LPS 0019508

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 8-55 protein denotes lipopolysaccharide-induced transcription factor
T2 67-94 protein denotes tumor necrosis factor alpha
T3 240-249 cell_type denotes monocytes
T4 254-265 cell_type denotes macrophages
T5 288-315 protein denotes tumor necrosis factor alpha
T6 317-326 protein denotes TNF-alpha
T7 407-416 protein denotes TNF-alpha
T8 446-455 protein denotes TNF-alpha
T9 517-531 protein denotes nuclear factor
T10 548-557 protein denotes TNF-alpha
T11 613-622 protein denotes NF-kappaB
T12 724-742 protein denotes DNA-binding domain
T13 776-800 DNA denotes human TNF-alpha promoter
T14 861-870 protein denotes NF-kappaB
T15 870-884 DNA denotes -binding sites
T16 941-955 protein denotes 60-kDa protein
T17 998-1021 protein denotes amino-terminal sequence
T18 1048-1065 DNA denotes degenerate probes
T19 1096-1107 cell_line denotes THP-1 cells
T20 1117-1127 DNA denotes cDNA clone
T21 1196-1206 DNA denotes cDNA clone
T22 1270-1281 cell_line denotes THP-1 cells
T23 1299-1327 protein denotes LPS-induced TNF-alpha factor
T24 1329-1334 protein denotes LITAF
T25 1351-1361 RNA denotes LITAF mRNA
T26 1376-1387 cell_line denotes THP-1 cells
T27 1415-1424 protein denotes TNF-alpha
T28 1479-1489 RNA denotes LITAF mRNA
T29 1534-1561 cell_type denotes peripheral blood leukocytes
T30 1681-1686 protein denotes LITAF
T31 1697-1721 DNA denotes chromosome 16p12-16p13.3
T32 1761-1766 protein denotes LITAF
T33 1816-1836 DNA denotes human TNF-alpha gene
T34 1877-1886 protein denotes TNF-alpha

semrep-sample

Id Subject Object Predicate Lexical cue
E1-ti-1 2-7 cui:C0679622 denotes novel
E2-ti-1 8-26 cui:C0023810 denotes lipopolysaccharide
E3-ti-1 27-34 cui:C0205263 denotes induced
E4-ti-1 35-55 cui:C0040648 denotes transcription factor
E5-ti-1 67-94 cui:C1448177 denotes tumor necrosis factor alpha
E6-ti-1 95-110 cui:C0017262 denotes gene expression
E7-ti-1 112-129 cui:C0009017 denotes molecular cloning
E8-ti-1 165-176 cui:C0008633 denotes chromosomal
E9-ti-1 177-187 cui:C1516050 denotes assignment
T1 56-66 INTERACTS_WITH denotes regulating
E1-ab-1 189-207 cui:C0023810 denotes Lipopolysaccharide
E2-ab-1 219-225 cui:C0237399 denotes potent
E3-ab-1 226-236 cui:C0175727 denotes stimulator
E4-ab-1 240-249 cui:C0026473 denotes monocytes
E5-ab-1 254-265 cui:C0024432 denotes macrophages
E6-ab-1 275-284 cui:C0015283 denotes secretion
E7-ab-1 288-315 cui:C1456820 denotes tumor necrosis factor alpha
E8-ab-1 338-360 cui:C0243042 denotes inflammatory mediators
E1-ab-2 384-391 cui:C1280500 denotes effects
E2-ab-2 399-403 cui:C1167395 denotes host
E3-ab-2 407-416 cui:C1456820 denotes TNF-alpha
E4-ab-2 446-455 cui:C1456820 denotes TNF-alpha
E5-ab-2 456-471 cui:C0017262 denotes gene expression
E1-ab-3 503-509 cui:C0349590 denotes nature
E2-ab-3 517-524 cui:C0521447 denotes nuclear
E3-ab-3 525-531 cui:C1521761 denotes factor
E4-ab-3 540-547 cui:C0243148 denotes control
E5-ab-3 548-557 cui:C1448177 denotes TNF-alpha
E6-ab-3 558-576 cui:C0040649 denotes gene transcription
E7-ab-3 580-586 cui:C0020114 denotes humans
E8-ab-3 613-622 cui:C0079904 denotes NF-kappaB
T2 577-579 PROCESS_OF denotes in
E1-ab-4 647-655 cui:C0205156 denotes previous
E2-ab-4 656-663 cui:C0008972 denotes studies
E3-ab-4 678-688 cui:C0024432 denotes macrophage
E4-ab-4 689-697 cui:C0871261 denotes response
E5-ab-4 701-704 cui:C0023810 denotes LPS
E6-ab-4 718-723 cui:C0679622 denotes novel
E7-ab-4 724-742 cui:C1511662 denotes DNA-binding domain
E8-ab-4 776-781 cui:C0020114 denotes human
E9-ab-4 782-791 cui:C0027540 denotes TNF-alpha
E10-ab-4 782-791 cui:C1521761 denotes TNF-alpha
E11-ab-4 782-791 cui:C0439095 denotes TNF-alpha
E12-ab-4 782-800 cui:C0041370 denotes TNF-alpha promoter
E13-ab-4 815-830 cui:C0040649 denotes transcriptional
E14-ab-4 831-839 cui:C0439167 denotes activity
E15-ab-4 855-860 cui:C0205309 denotes known
E16-ab-4 861-870 cui:C0079904 denotes NF-kappaB
E17-ab-4 871-884 cui:C0005456 denotes binding sites
T3 776-791 PROCESS_OF denotes human TNF-alpha
T4 782-791 AFFECTS denotes TNF-alpha
E1-ab-5 904-907 cui:C0012854 denotes DNA
E2-ab-5 944-947 cui:C1532717 denotes kDa
E3-ab-5 948-963 cui:C0033618 denotes protein binding
E4-ab-5 972-980 cui:C0486805 denotes fragment
E5-ab-5 1004-1012 cui:C0205088 denotes terminal
E6-ab-5 1013-1021 cui:C1519249 denotes sequence
E7-ab-5 1059-1065 cui:C0182400 denotes probes
E8-ab-5 1078-1090 cui:C0751608 denotes cDNA library
E9-ab-5 1096-1101 entrez:2736 denotes THP-1
E10-ab-5 1102-1107 cui:C0007634 denotes cells
T5 1091-1095 LOCATION_OF denotes from
E1-ab-6 1111-1116 cui:C0679622 denotes novel
E2-ab-6 1117-1121 cui:C0006556 denotes cDNA
E3-ab-6 1122-1127 cui:C1522642 denotes clone
E1-ab-7 1196-1200 cui:C0006556 denotes cDNA
E2-ab-7 1201-1206 cui:C1522642 denotes clone
E3-ab-7 1225-1234 cui:C0857127 denotes induction
E4-ab-7 1252-1255 cui:C0023810 denotes LPS
E5-ab-7 1270-1275 entrez:2736 denotes THP-1
E6-ab-7 1276-1281 cui:C0007634 denotes cells
T6 1256-1266 AUGMENTS denotes activation
E1-ab-8 1294-1298 cui:C0027365 denotes name
E2-ab-8 1299-1302 cui:C0023810 denotes LPS
E3-ab-8 1303-1310 cui:C0205263 denotes induced
E4-ab-8 1311-1320 cui:C1456820 denotes TNF-alpha
E5-ab-8 1329-1334 entrez:9516 denotes LITAF
E1-ab-9 1351-1356 entrez:9516 denotes LITAF
E2-ab-9 1357-1372 cui:C1515670 denotes mRNA expression
E3-ab-9 1376-1381 entrez:2736 denotes THP-1
E4-ab-9 1382-1387 cui:C0007634 denotes cells
E5-ab-9 1415-1424 cui:C1448177 denotes TNF-alpha
E6-ab-9 1425-1436 cui:C1519595 denotes transcripts
T7 1373-1375 LOCATION_OF denotes in
E1-ab-10 1441-1449 cui:C0442796 denotes addition
E2-ab-10 1451-1455 cui:C0205250 denotes high
E3-ab-10 1465-1475 cui:C0185117 denotes expression
E4-ab-10 1479-1484 entrez:9516 denotes LITAF
E5-ab-10 1485-1489 cui:C0035696 denotes mRNA
E6-ab-10 1524-1532 cui:C0032043 denotes placenta
E7-ab-10 1534-1550 cui:C0229664 denotes peripheral blood
E8-ab-10 1551-1561 cui:C0023516 denotes leukocytes
E9-ab-10 1563-1574 cui:C0024204 denotes lymph nodes
E10-ab-10 1584-1590 cui:C0037993 denotes spleen
T8 1517-1519 LOCATION_OF denotes in
T9 1517-1519 LOCATION_OF denotes in
T10 1517-1519 LOCATION_OF denotes in
T11 1517-1519 LOCATION_OF denotes in
E1-ab-11 1601-1612 cui:C0008633 denotes chromosomal
E2-ab-11 1613-1625 cui:C1524110 denotes localization
E3-ab-11 1632-1644 cui:C0016315 denotes fluorescence
E4-ab-11 1653-1666 cui:C0020202 denotes hybridization
E5-ab-11 1681-1686 entrez:9516 denotes LITAF
E6-ab-11 1697-1707 cui:C0008633 denotes chromosome
E7-ab-11 1708-1713 cui:C1520681 denotes 16p12
E8-ab-11 1714-1721 cui:C1520688 denotes 16p13.3
T12 1645-1647 PROCESS_OF denotes in
T13 1687-1693 PART_OF denotes mapped
E1-ab-12 1739-1747 cui:C0243095 denotes findings
E2-ab-12 1761-1766 entrez:9516 denotes LITAF
E3-ab-12 1786-1790 cui:C0035820 denotes role
E4-ab-12 1822-1831 cui:C1448177 denotes TNF-alpha
E5-ab-12 1816-1836 cui:C0314604 denotes human TNF-alpha gene
E6-ab-12 1852-1855 cui:C0205314 denotes new
E7-ab-12 1856-1865 cui:C0441712 denotes mechanism
E8-ab-12 1877-1886 cui:C1448177 denotes TNF-alpha
E9-ab-12 1887-1902 cui:C0017262 denotes gene expression
T14 1798-1808 STIMULATES denotes activation
R1 E4-ti-1 T1 subjectOf transcription factor,regulating
R2 E5-ti-1 T1 objectOf tumor necrosis factor alpha,regulating
R3 E6-ab-3 T2 subjectOf gene transcription,in
R4 E7-ab-3 T2 objectOf humans,in
R5 E9-ab-4 T3 subjectOf TNF-alpha,human TNF-alpha
R6 E8-ab-4 T3 objectOf human,human TNF-alpha
R7 E5-ab-4 T4 subjectOf LPS,TNF-alpha
R8 E9-ab-4 T4 objectOf TNF-alpha,TNF-alpha
R9 E10-ab-5 T5 subjectOf cells,from
R10 E8-ab-5 T5 objectOf cDNA library,from
R11 E4-ab-7 T6 subjectOf LPS,activation
R12 E6-ab-7 T6 objectOf cells,activation
R13 E4-ab-9 T7 subjectOf cells,in
R14 E1-ab-9 T7 objectOf LITAF,in
R15 E6-ab-10 T8 subjectOf placenta,in
R16 E4-ab-10 T8 objectOf LITAF,in
R17 E10-ab-10 T9 subjectOf spleen,in
R18 E4-ab-10 T9 objectOf LITAF,in
R19 E9-ab-10 T10 subjectOf lymph nodes,in
R20 E4-ab-10 T10 objectOf LITAF,in
R21 E8-ab-10 T11 subjectOf leukocytes,in
R22 E4-ab-10 T11 objectOf LITAF,in
R23 E3-ab-11 T12 subjectOf fluorescence,in
R24 E4-ab-11 T12 objectOf hybridization,in
R25 E5-ab-11 T13 subjectOf LITAF,mapped
R26 E8-ab-11 T13 objectOf 16p13.3,mapped
R27 E2-ab-12 T14 subjectOf LITAF,activation
R28 E4-ab-12 T14 objectOf TNF-alpha,activation

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-188 Sentence denotes A novel lipopolysaccharide-induced transcription factor regulating tumor necrosis factor alpha gene expression: molecular cloning, sequencing, characterization, and chromosomal assignment.
S2 189-361 Sentence denotes Lipopolysaccharide (LPS) is a potent stimulator of monocytes and macrophages, causing secretion of tumor necrosis factor alpha (TNF-alpha) and other inflammatory mediators.
S3 362-498 Sentence denotes Given the deleterious effects to the host of TNF-alpha, it has been postulated that TNF-alpha gene expression must be tightly regulated.
S4 499-642 Sentence denotes The nature of the nuclear factor(s) that control TNF-alpha gene transcription in humans remains obscure, although NF-kappaB has been suggested.
S5 643-885 Sentence denotes Our previous studies pertaining to macrophage response to LPS identified a novel DNA-binding domain located from -550 to -487 in the human TNF-alpha promoter that contains transcriptional activity, but lacks any known NF-kappaB-binding sites.
S6 886-1108 Sentence denotes We have used this DNA fragment to isolate and purify a 60-kDa protein binding to this fragment and obtained its amino-terminal sequence, which was used to design degenerate probes to screen a cDNA library from THP-1 cells.
S7 1109-1170 Sentence denotes A novel cDNA clone (1.8 kb) was isolated and fully sequenced.
S8 1171-1336 Sentence denotes Characterization of this cDNA clone revealed that its induction was dependent on LPS activation of THP-1 cells; hence, the name LPS-induced TNF-alpha factor (LITAF).
S9 1337-1437 Sentence denotes Inhibition of LITAF mRNA expression in THP-1 cells resulted in a reduction of TNF-alpha transcripts.
S10 1438-1591 Sentence denotes In addition, high level of expression of LITAF mRNA was observed predominantly in the placenta, peripheral blood leukocytes, lymph nodes, and the spleen.
S11 1592-1722 Sentence denotes Finally, chromosomal localization using fluorescence in situ hybridization revealed that LITAF mapped to chromosome 16p12-16p13.3.
S12 1723-1903 Sentence denotes Together, these findings suggest that LITAF plays an important role in the activation of the human TNF-alpha gene and proposes a new mechanism to control TNF-alpha gene expression.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 67-110 NP denotes tumor necrosis factor alpha gene expression
C2 189-213 NP denotes Lipopolysaccharide (LPS)
C3 288-327 NP denotes tumor necrosis factor alpha (TNF-alpha)
C4 407-416 NP denotes TNF-alpha
C5 446-471 NP denotes TNF-alpha gene expression
C6 513-534 NP denotes the nuclear factor(s)
C7 535-539 NP denotes that
C8 701-704 NP denotes LPS
C10 772-800 NP denotes the human TNF-alpha promoter
C11 801-805 NP denotes that
C9 716-884 NP denotes a novel DNA-binding domain located from -550 to -487 in the human TNF-alpha promoter that contains transcriptional activity, but lacks any known NF-kappaB-binding sites
C12 899-916 NP denotes this DNA fragment
C13 967-980 NP denotes this fragment
C15 994-997 NP denotes its
C14 994-1021 NP denotes its amino-terminal sequence
C16 1023-1028 NP denotes which
C17 1096-1107 NP denotes THP-1 cells
C18 1109-1136 NP denotes A novel cDNA clone (1.8 kb)
C19 1191-1206 NP denotes this cDNA clone
C20 1221-1224 NP denotes its
C21 1270-1282 NP denotes THP-1 cells;
C22 1290-1335 NP denotes the name LPS-induced TNF-alpha factor (LITAF)
C23 1376-1387 NP denotes THP-1 cells
C24 1681-1686 NP denotes LITAF
C25 1761-1766 NP denotes LITAF
C26 1877-1902 NP denotes TNF-alpha gene expression
R1 C4 C3 coref-ident TNF-alpha,tumor necrosis factor alpha (TNF-alpha)
R2 C5 C1 coref-ident TNF-alpha gene expression,tumor necrosis factor alpha gene expression
R3 C7 C6 coref-relat that,the nuclear factor(s)
R4 C8 C2 coref-ident LPS,Lipopolysaccharide (LPS)
R5 C11 C10 coref-relat that,the human TNF-alpha promoter
R6 C12 C9 coref-ident this DNA fragment,"a novel DNA-binding domain located from -550 to -487 in the human TNF-alpha promoter that contains transcriptional activity, but lacks any known NF-kappaB-binding sites"
R7 C13 C12 coref-ident this fragment,this DNA fragment
R8 C15 C13 coref-pron its,this fragment
R9 C16 C14 coref-relat which,its amino-terminal sequence
R10 C19 C18 coref-ident this cDNA clone,A novel cDNA clone (1.8 kb)
R11 C20 C19 coref-pron its,this cDNA clone
R12 C21 C17 coref-ident THP-1 cells;,THP-1 cells
R13 C23 C21 coref-ident THP-1 cells,THP-1 cells;
R14 C24 C22 coref-ident LITAF,the name LPS-induced TNF-alpha factor (LITAF)
R15 C25 C24 coref-ident LITAF,LITAF
R16 C26 C5 coref-ident TNF-alpha gene expression,TNF-alpha gene expression

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 8-55 protein_family_or_group denotes lipopolysaccharide-induced transcription factor
T2 67-94 protein_molecule denotes tumor necrosis factor alpha
T3 112-129 other_name denotes molecular cloning
T4 131-141 other_name denotes sequencing
T5 143-159 other_name denotes characterization
T6 165-187 other_name denotes chromosomal assignment
T7 189-207 lipid denotes Lipopolysaccharide
T8 209-212 lipid denotes LPS
T9 240-249 cell_type denotes monocytes
T10 254-265 cell_type denotes macrophages
T11 288-315 protein_molecule denotes tumor necrosis factor alpha
T12 317-326 protein_molecule denotes TNF-alpha
T13 338-360 other_name denotes inflammatory mediators
T14 407-416 protein_molecule denotes TNF-alpha
T15 446-455 protein_molecule denotes TNF-alpha
T16 517-531 protein_family_or_group denotes nuclear factor
T17 548-557 protein_molecule denotes TNF-alpha
T18 613-622 protein_complex denotes NF-kappaB
T19 701-704 lipid denotes LPS
T20 724-742 protein_domain_or_region denotes DNA-binding domain
T21 776-781 DNA_domain_or_region denotes human
T22 782-791 protein_molecule denotes TNF-alpha
T23 815-839 other_name denotes transcriptional activity
T24 861-870 protein_complex denotes NF-kappaB
T25 870-884 DNA_domain_or_region denotes -binding sites
T26 941-955 protein_molecule denotes 60-kDa protein
T27 998-1021 protein_domain_or_region denotes amino-terminal sequence
T28 1048-1065 DNA_molecule denotes degenerate probes
T29 1078-1090 other_name denotes cDNA library
T30 1096-1107 cell_line denotes THP-1 cells
T31 1117-1127 DNA_molecule denotes cDNA clone
T32 1196-1206 DNA_molecule denotes cDNA clone
T33 1252-1255 lipid denotes LPS
T34 1270-1281 cell_line denotes THP-1 cells
T35 1299-1302 lipid denotes LPS
T36 1311-1320 protein_molecule denotes TNF-alpha
T37 1329-1334 protein_molecule denotes LITAF
T38 1351-1356 protein_molecule denotes LITAF
T39 1376-1387 cell_line denotes THP-1 cells
T40 1415-1424 protein_molecule denotes TNF-alpha
T41 1479-1484 protein_molecule denotes LITAF
T42 1524-1532 body_part denotes placenta
T43 1534-1561 cell_type denotes peripheral blood leukocytes
T44 1563-1574 body_part denotes lymph nodes
T45 1584-1590 body_part denotes spleen
T46 1601-1625 other_name denotes chromosomal localization
T47 1632-1666 other_name denotes fluorescence in situ hybridization
T48 1681-1686 protein_molecule denotes LITAF
T49 1697-1721 DNA_domain_or_region denotes chromosome 16p12-16p13.3
T50 1761-1766 protein_molecule denotes LITAF
T51 1816-1821 DNA_domain_or_region denotes human
T52 1822-1831 protein_molecule denotes TNF-alpha
T53 1877-1886 protein_molecule denotes TNF-alpha

metamap-sample

Id Subject Object Predicate Lexical cue
T1 166-177 C0008633 denotes hromosomal
T2 1416-1425 C1456820 denotes NF-alpha
T3 783-792 C1456820 denotes NF-alpha
T4 549-558 C1456820 denotes NF-alpha
T5 289-316 C1456820 denotes umor necrosis factor alpha
T6 1253-1256 C0023810 denotes PS
T7 702-705 C0023810 denotes PS
T8 190-208 C0023810 denotes ipopolysaccharide
T9 9-27 C0023810 denotes ipopolysaccharide-
T10 113-130 C0009017 denotes olecular cloning,
T11 36-56 C0040648 denotes ranscription factor
T12 1888-1903 C0017262 denotes ene expression.
T13 457-472 C0017262 denotes ene expression
T14 96-111 C0017262 denotes ene expression:
T15 132-142 C1553778 denotes equencing,
T16 1172-1188 C1880022 denotes haracterization
T17 144-160 C1880022 denotes haracterization,
T18 178-188 C1516050 denotes ssignment.
T19 1226-1235 C0205263 denotes nduction
T20 28-35 C0205263 denotes nduced
T21 1853-1856 C0205314 denotes ew
T22 1112-1117 C0205314 denotes ovel
T23 719-724 C0205314 denotes ovel
T24 3-8 C0205314 denotes ovel
T25 1817-1822 C0086418 denotes uman
T26 777-782 C0086418 denotes uman
T27 581-587 C0086418 denotes umans
T28 1197-1201 C0006556 denotes DNA
T29 1118-1122 C0006556 denotes DNA
T30 816-831 C0040649 denotes ranscriptional
T31 559-577 C0040649 denotes ene transcription
T32 564-577 C0040649 denotes ranscription
T33 1633-1667 C0162789 denotes luorescence in situ hybridization
T34 679-689 C0024432 denotes acrophage
T35 255-266 C0024432 denotes acrophages,
T36 1552-1562 C0023516 denotes eukocytes,
T37 1546-1562 C0023516 denotes lood leukocytes,
T38 1817-1832 C1448177 denotes uman TNF-alpha
T39 777-792 C1448177 denotes uman TNF-alpha
T40 1762-1767 C1424587 denotes ITAF
T41 1682-1687 C1424587 denotes ITAF
T42 1480-1485 C1424587 denotes ITAF
T43 1352-1357 C1424587 denotes ITAF
T44 1300-1328 C1424587 denotes PS-induced TNF-alpha factor
T45 1330-1335 C1424587 denotes ITAF)
T46 1202-1206 C0009013 denotes lone
T47 1123-1127 C0009013 denotes lone
T48 276-285 C0036536 denotes ecretion
T49 1295-1299 C0027365 denotes ame
T50 241-250 C0026473 denotes onocytes
T51 1585-1591 C0037993 denotes pleen.
T52 1564-1575 C0024204 denotes ymph nodes,
T53 614-623 C0079904 denotes F-kappaB
T54 1338-1348 C0021467 denotes nhibition
T55 1486-1490 C0035696 denotes RNA
T56 905-908 C0012854 denotes NA
T57 489-498 C0851285 denotes egulated.
T58 1377-1380 C1705396 denotes HP-
T59 1271-1274 C1705396 denotes HP-
T60 1097-1100 C1705396 denotes HP-
T61 1668-1676 C0443289 denotes evealed
T62 1208-1216 C0443289 denotes evealed
T63 1079-1091 C0751608 denotes DNA library
T64 1749-1756 C1705535 denotes uggest
T65 633-642 C1705535 denotes uggested.
T66 1161-1170 C1519249 denotes equenced.
T67 1014-1022 C1519249 denotes equence,
T68 1870-1877 C1882979 denotes ontrol
T69 541-548 C1882979 denotes ontrol
T70 1383-1388 C0007634 denotes ells
T71 1103-1108 C0007634 denotes ells.
T72 1823-1832 C2003941 denotes NF-alpha
T73 783-792 C2003941 denotes NF-alpha
T74 1525-1533 C0032043 denotes lacenta,
T75 1442-1450 C1883712 denotes ddition,
T76 1142-1150 C1548221 denotes solated
T77 268-275 C0678227 denotes ausing
T78 807-814 C2700400 denotes ontains
T79 1042-1047 C1707689 denotes esign
T80 1768-1773 C0600138 denotes lays
T81 363-368 C1442162 denotes iven
T82 921-928 C1875400 denotes solate
T83 706-716 C0205396 denotes dentified
T84 846-851 C0332268 denotes acks
T85 1495-1503 C1441672 denotes bserved
T86 986-994 C1301820 denotes btained
T87 1070-1076 C0220908 denotes creen
T88 1724-1732 C1883357 denotes ogether,
T89 1627-1632 C1524063 denotes sing
T90 1740-1748 C2607943 denotes indings
T91 1602-1626 C1657114 denotes hromosomal localization
T92 933-939 C1998793 denotes urify
T93 1535-1551 C0229664 denotes eripheral blood
T94 862-879 C1523084 denotes F-kappaB-binding
T95 832-840 C0441655 denotes ctivity,
T96 339-351 C0333348 denotes nflammatory
T97 352-361 C0127400 denotes ediators.
T98 657-664 C0947630 denotes tudies
T99 1857-1866 C0441712 denotes echanism
T100 1535-1545 C0205100 denotes eripheral
T101 1060-1066 C0182400 denotes robes
T102 880-885 C0205145 denotes ites.
T103 793-801 C0086860 denotes romoter
T104 1715-1722 C1520688 denotes 6p13.3.
T105 690-698 C2911692 denotes esponse
T106 227-237 C0175727 denotes timulator
T107 1709-1714 C1520681 denotes 6p12-
T108 504-510 C1262865 denotes ature
T109 1452-1456 C1299351 denotes igh
T110 1457-1462 C0441889 denotes evel
T111 957-964 C1145667 denotes inding
T112 1240-1249 C0851827 denotes ependent
T113 1403-1412 C0441610 denotes eduction
T114 1426-1437 C1519595 denotes ranscripts.
T115 385-392 C1280500 denotes ffects
T116 1787-1791 C1705810 denotes ole
T117 1389-1397 C2825142 denotes esulted
T118 648-655 C0205156 denotes revious
T119 1130-1131 C2827734 denotes .
T120 1005-1013 C0205088 denotes erminal
T121 1049-1059 C1880269 denotes egenerate
T122 856-861 C0205309 denotes nown
T123 526-532 C1521761 denotes actor(
T124 518-525 C0521447 denotes uclear
T125 1823-1837 C1537647 denotes NF-alpha gene
T126 945-948 C1532717 denotes Da
T127 400-404 C1167395 denotes ost
T128 1799-1809 C1879547 denotes ctivation
T129 220-226 C3245505 denotes otent

bionlp-st-gro-2013-training

Id Subject Object Predicate Lexical cue
T1 8-26 OrganicChemical denotes lipopolysaccharide
T3 35-55 TranscriptionFactor denotes transcription factor
T5 67-94 Protein denotes tumor necrosis factor alpha
T7 189-207 OrganicChemical denotes Lipopolysaccharide
T8 209-212 OrganicChemical denotes LPS
T10 240-249 Cell denotes monocytes
T11 254-265 Cell denotes macrophages
T12 317-326 Protein denotes TNF-alpha
T14 338-360 MolecularEntity denotes inflammatory mediators
T15 407-416 Protein denotes TNF-alpha
T16 446-455 Protein denotes TNF-alpha
T19 517-534 Protein denotes nuclear factor(s)
T21 548-562 Gene denotes TNF-alpha gene
T23 580-586 Eukaryote denotes humans
T24 613-622 Protein denotes NF-kappaB
T25 678-688 Cell denotes macrophage
T27 701-704 OrganicChemical denotes LPS
T28 724-742 DNABindingDomainOfProtein denotes DNA-binding domain
T29 776-781 Eukaryote denotes human
T30 782-791 Gene denotes TNF-alpha
T31 792-800 Promoter denotes promoter
T33 861-870 Protein denotes NF-kappaB
T34 871-884 BindingSiteOfProtein denotes binding sites
T35 904-916 DNAFragment denotes DNA fragment
T36 948-955 Protein denotes protein
T38 972-980 DNAFragment denotes fragment
T39 1078-1090 DNA denotes cDNA library
T40 1096-1107 Cell denotes THP-1 cells
T41 1117-1127 DNA denotes cDNA clone
T42 1196-1206 DNA denotes cDNA clone
T44 1252-1255 OrganicChemical denotes LPS
T46 1270-1281 Cell denotes THP-1 cells
T47 1299-1327 Protein denotes LPS-induced TNF-alpha factor
T48 1329-1334 Protein denotes LITAF
T50 1351-1356 Protein denotes LITAF
T51 1357-1361 MessengerRNA denotes mRNA
T53 1376-1387 Cell denotes THP-1 cells
T55 1415-1424 Protein denotes TNF-alpha
T56 1425-1436 Transcript denotes transcripts
T58 1479-1484 Protein denotes LITAF
T59 1485-1489 MessengerRNA denotes mRNA
T60 1524-1532 Tissue denotes placenta
T61 1534-1561 Cell denotes peripheral blood leukocytes
T62 1563-1574 Tissue denotes lymph nodes
T63 1584-1590 Tissue denotes spleen
T64 1601-1612 Chromosome denotes chromosomal
T66 1681-1686 Gene denotes LITAF
T67 1697-1721 Chromosome denotes chromosome 16p12-16p13.3
T68 1761-1766 Protein denotes LITAF
T70 1816-1821 Eukaryote denotes human
T71 1822-1836 Gene denotes TNF-alpha gene
T73 1877-1886 Protein denotes TNF-alpha
T32 815-839 TranscriptionFactorActivity denotes transcriptional activity
E1 27-34 PositiveRegulation denotes induced
E2 56-66 RegulatoryProcess denotes regulating
E3 95-110 GeneExpression denotes gene expression
E4 456-471 GeneExpression denotes gene expression
E5 488-497 RegulatoryProcess denotes regulated
E6 540-547 RegulatoryProcess denotes control
E7 563-576 Transcription denotes transcription
E8 689-697 ResponseProcess denotes response
E10 956-963 BindingOfProteinToDNA denotes binding
E11 1225-1234 Increase denotes induction
E12 1256-1266 PositiveRegulation denotes activation
E13 1337-1347 NegativeRegulation denotes Inhibition
E14 1362-1372 TranscriptionOfGene denotes expression
E15 1402-1411 Decrease denotes reduction
E18 1798-1808 PositiveRegulation denotes activation
E19 1869-1876 RegulatoryProcess denotes control
E20 1887-1902 GeneExpression denotes gene expression
E21 226-236 PositiveRegulation denotes stimulator
E22 275-284 Transport denotes secretion
E9 1451-1475 PositiveRegulationOfTranscriptionOfGene denotes high level of expression
E16 226-236 PositiveRegulation denotes stimulator
E17 275-284 Transport denotes secretion
R1 T30 T29 fromSpecies TNF-alpha,human
R2 T30 T31 hasPart TNF-alpha,promoter
R7 T51 T50 encodes mRNA,LITAF
R8 E14 T53 locatedIn expression,THP-1 cells
R14 T59 T58 encodes mRNA,LITAF
R16 T66 T67 locatedIn LITAF,chromosome 16p12-16p13.3
R17 T71 T70 fromSpecies TNF-alpha gene,human
R18 E7 T23 fromSpecies transcription,humans
R3 T39 T40 locatedIn cDNA library,THP-1 cells
R4 T56 T55 encodes transcripts,TNF-alpha
R5 E9 T60 locatedIn high level of expression,placenta
R6 E9 T61 locatedIn high level of expression,peripheral blood leukocytes
R9 E9 T62 locatedIn high level of expression,lymph nodes
R10 E9 T63 locatedIn high level of expression,spleen
R12 T1 E1 hasAgent lipopolysaccharide,induced
R13 T3 E1 hasPatient transcription factor,induced
R14 T3 E2 hasAgent transcription factor,regulating
R15 E3 E2 hasPatient gene expression,regulating
R16 T5 E3 hasPatient tumor necrosis factor alpha,gene expression
R17 T16 E4 hasPatient TNF-alpha,gene expression
R18 E4 E5 hasPatient gene expression,regulated
R19 T19 E6 hasAgent nuclear factor(s),control
R20 E7 E6 hasPatient transcription,control
R21 T21 E7 hasPatient TNF-alpha gene,transcription
R22 T27 E8 hasAgent LPS,response
R24 T25 E8 hasPatient macrophage,response
R25 T36 E10 hasAgent protein,binding
R26 T38 E10 hasPatient fragment,binding
R27 E12 E11 hasAgent activation,induction
R28 T42 E11 hasPatient cDNA clone,induction
R29 T44 E12 hasAgent LPS,activation
R31 T46 E12 hasPatient THP-1 cells,activation
R32 E14 E13 hasPatient expression,Inhibition
R33 T51 E14 hasPatient mRNA,expression
R34 E13 E15 hasAgent Inhibition,reduction
R35 T56 E15 hasPatient transcripts,reduction
R36 T71 E18 hasPatient TNF-alpha gene,activation
R37 E20 E19 hasPatient gene expression,control
R38 T73 E20 hasPatient TNF-alpha,gene expression
R39 T7 E21 hasAgent Lipopolysaccharide,stimulator
R40 T10 E21 hasPatient monocytes,stimulator
R41 T12 E22 hasPatient TNF-alpha,secretion
R42 T59 E9 hasPatient mRNA,high level of expression
R43 T7 E16 hasAgent Lipopolysaccharide,stimulator
R44 T11 E16 hasPatient macrophages,stimulator
R45 T14 E17 hasPatient inflammatory mediators,secretion

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 288-293 HP_0002664 denotes tumor