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sentences

Id Subject Object Predicate Lexical cue
T1 0-88 Sentence denotes Spi-C, a novel Ets protein that is temporally regulated during B lymphocyte development.
T2 89-287 Sentence denotes A novel Ets protein was isolated by yeast one-hybrid screening of a cDNA library made from lipopolysaccharide-stimulated mouse splenic B cells, using the SP6 kappa promoter kappaY element as a bait.
T3 288-417 Sentence denotes The novel Ets protein was most closely related to PU.1 and Spi-B within the DNA binding Ets domain and was therefore named Spi-C.
T4 418-577 Sentence denotes However, Spi-C may represent a novel subgroup within the Ets protein family, as it differed significantly from Spi-B and PU.1 within helix 1 of the Ets domain.
T5 578-661 Sentence denotes Spi-C was encoded by a single-copy gene that was mapped to chromosome 10, region C.
T6 662-882 Sentence denotes Spi-C interacted with DNA similarly to PU.1 as judged by methylation interference, band-shift and site selection analysis, and activated transcription of a kappaY element reporter gene upon co-transfection of HeLa cells.
T7 883-966 Sentence denotes Spi-C RNA was expressed in mature B lymphocytes and at lower levels in macrophages.
T8 967-1137 Sentence denotes Furthermore, pre-B cell and plasma cell lines were Spi-C-negative, suggesting that Spi-C might be a regulatory molecule during a specific phase of B lymphoid development.

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 0-5 protein denotes Spi-C
T2 15-26 protein denotes Ets protein
T3 97-108 protein denotes Ets protein
T4 157-169 DNA denotes cDNA library
T5 180-231 cell_line denotes lipopolysaccharide-stimulated mouse splenic B cells
T6 243-276 DNA denotes SP6 kappa promoter kappaY element
T7 298-309 protein denotes Ets protein
T8 338-342 protein denotes PU.1
T9 347-352 protein denotes Spi-B
T10 364-386 DNA denotes DNA binding Ets domain
T11 411-416 protein denotes Spi-C
T12 427-432 protein denotes Spi-C
T13 475-493 protein denotes Ets protein family
T14 529-534 protein denotes Spi-B
T15 539-543 protein denotes PU.1
T16 551-558 protein denotes helix 1
T17 566-576 protein denotes Ets domain
T18 578-583 protein denotes Spi-C
T19 601-617 DNA denotes single-copy gene
T20 637-650 DNA denotes chromosome 10
T21 652-660 DNA denotes region C
T22 662-667 protein denotes Spi-C
T23 701-705 protein denotes PU.1
T24 818-846 DNA denotes kappaY element reporter gene
T25 871-881 cell_line denotes HeLa cells
T26 883-892 RNA denotes Spi-C RNA
T27 910-930 cell_type denotes mature B lymphocytes
T28 954-965 cell_type denotes macrophages
T29 980-1012 cell_line denotes pre-B cell and plasma cell lines
T30 1018-1023 protein denotes Spi-C
T31 1050-1055 protein denotes Spi-C
T32 1067-1086 protein denotes regulatory molecule

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-88 Sentence denotes Spi-C, a novel Ets protein that is temporally regulated during B lymphocyte development.
S2 89-287 Sentence denotes A novel Ets protein was isolated by yeast one-hybrid screening of a cDNA library made from lipopolysaccharide-stimulated mouse splenic B cells, using the SP6 kappa promoter kappaY element as a bait.
S3 288-417 Sentence denotes The novel Ets protein was most closely related to PU.1 and Spi-B within the DNA binding Ets domain and was therefore named Spi-C.
S4 418-577 Sentence denotes However, Spi-C may represent a novel subgroup within the Ets protein family, as it differed significantly from Spi-B and PU.1 within helix 1 of the Ets domain.
S5 578-661 Sentence denotes Spi-C was encoded by a single-copy gene that was mapped to chromosome 10, region C.
S6 662-882 Sentence denotes Spi-C interacted with DNA similarly to PU.1 as judged by methylation interference, band-shift and site selection analysis, and activated transcription of a kappaY element reporter gene upon co-transfection of HeLa cells.
S7 883-966 Sentence denotes Spi-C RNA was expressed in mature B lymphocytes and at lower levels in macrophages.
S8 967-1137 Sentence denotes Furthermore, pre-B cell and plasma cell lines were Spi-C-negative, suggesting that Spi-C might be a regulatory molecule during a specific phase of B lymphoid development.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 0-5 NP denotes Spi-C
C3 7-26 NP denotes a novel Ets protein
C4 27-31 NP denotes that
C2 7-87 NP denotes a novel Ets protein that is temporally regulated during B lymphocyte development
C5 89-108 NP denotes A novel Ets protein
C6 288-309 NP denotes The novel Ets protein
C7 376-386 NP denotes Ets domain
C8 411-416 NP denotes Spi-C
C9 427-432 NP denotes Spi-C
C10 498-500 NP denotes it
C11 562-576 NP denotes the Ets domain
C12 578-583 NP denotes Spi-C
C13 599-617 NP denotes a single-copy gene
C14 618-622 NP denotes that
C15 662-667 NP denotes Spi-C
C16 1050-1055 NP denotes Spi-C
R1 C4 C3 coref-relat that,a novel Ets protein
R2 C2 C1 coref-appos a novel Ets protein that is temporally regulated during B lymphocyte development,Spi-C
R3 C6 C5 coref-ident The novel Ets protein,A novel Ets protein
R4 C8 C1 coref-ident Spi-C,Spi-C
R5 C9 C8 coref-ident Spi-C,Spi-C
R6 C10 C9 coref-pron it,Spi-C
R7 C11 C7 coref-ident the Ets domain,Ets domain
R8 C12 C9 coref-ident Spi-C,Spi-C
R9 C14 C13 coref-relat that,a single-copy gene
R10 C15 C12 coref-ident Spi-C,Spi-C
R11 C16 C15 coref-ident Spi-C,Spi-C

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-5 protein_molecule denotes Spi-C
T2 15-26 protein_family_or_group denotes Ets protein
T3 63-87 other_name denotes B lymphocyte development
T4 97-108 protein_family_or_group denotes Ets protein
T5 125-130 mono_cell denotes yeast
T6 157-169 DNA_family_or_group denotes cDNA library
T7 180-231 cell_line denotes lipopolysaccharide-stimulated mouse splenic B cells
T8 243-276 DNA_domain_or_region denotes SP6 kappa promoter kappaY element
T9 298-309 protein_family_or_group denotes Ets protein
T10 338-342 protein_molecule denotes PU.1
T11 347-352 protein_molecule denotes Spi-B
T12 364-386 DNA_domain_or_region denotes DNA binding Ets domain
T13 411-416 protein_molecule denotes Spi-C
T14 427-432 protein_molecule denotes Spi-C
T15 475-486 protein_family_or_group denotes Ets protein
T16 529-534 protein_molecule denotes Spi-B
T17 539-543 protein_molecule denotes PU.1
T18 566-576 protein_domain_or_region denotes Ets domain
T19 578-583 protein_molecule denotes Spi-C
T20 601-617 DNA_family_or_group denotes single-copy gene
T21 637-650 DNA_molecule denotes chromosome 10
T22 652-660 DNA_domain_or_region denotes region C
T23 662-667 protein_molecule denotes Spi-C
T24 701-705 protein_molecule denotes PU.1
T25 719-743 other_name denotes methylation interference
T26 745-755 other_name denotes band-shift
T27 760-783 other_name denotes site selection analysis
T28 818-846 DNA_domain_or_region denotes kappaY element reporter gene
T29 852-867 other_name denotes co-transfection
T30 871-881 cell_line denotes HeLa cells
T31 883-888 protein_molecule denotes Spi-C
T32 910-930 cell_type denotes mature B lymphocytes
T33 954-965 cell_type denotes macrophages
T34 1018-1023 protein_molecule denotes Spi-C
T35 1050-1055 protein_molecule denotes Spi-C
T36 1067-1086 protein_family_or_group denotes regulatory molecule
T37 1114-1136 other_name denotes B lymphoid development

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 210-215 OrganismTaxon denotes mouse 10088|10090

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 63-75 Body_part denotes B lymphocyte http://purl.obolibrary.org/obo/CL_0000236
T2 551-556 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488
T3 637-647 Body_part denotes chromosome http://purl.obolibrary.org/obo/GO_0005694
T4 910-930 Body_part denotes mature B lymphocytes http://purl.obolibrary.org/obo/CL_0000785
T5 954-965 Body_part denotes macrophages http://purl.obolibrary.org/obo/CL_0000235
T6 980-990 Body_part denotes pre-B cell http://purl.obolibrary.org/obo/CL_0000817
T7 995-1006 Body_part denotes plasma cell http://purl.obolibrary.org/obo/CL_0000786

CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 63-75 Cell denotes B lymphocyte http://purl.obolibrary.org/obo/CL:0000236
T2 65-75 Cell denotes lymphocyte http://purl.obolibrary.org/obo/CL:0000542
T3 224-231 Cell denotes B cells http://purl.obolibrary.org/obo/CL:0000236
T4 745-749 Cell denotes band http://purl.obolibrary.org/obo/CL:0000560
T5 910-930 Cell denotes mature B lymphocytes http://purl.obolibrary.org/obo/CL:0000785
T6 954-965 Cell denotes macrophages http://purl.obolibrary.org/obo/CL:0000235|http://purl.obolibrary.org/obo/CL:0000394
T8 980-990 Cell denotes pre-B cell http://purl.obolibrary.org/obo/CL:0000817
T9 984-990 Cell denotes B cell http://purl.obolibrary.org/obo/CL:0000236
T10 995-1006 Cell denotes plasma cell http://purl.obolibrary.org/obo/CL:0000786