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PubMed:10101249 JSONTXT

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Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 225-233 Body_part denotes prostate http://purl.obolibrary.org/obo/MAT_0000078
T2 265-269 Body_part denotes bone http://purl.obolibrary.org/obo/MAT_0000299

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 0-18 protein denotes Vitamin D receptor
T2 19-41 DNA denotes 3'-untranslated region
T3 130-159 DNA denotes vitamin D receptor (VDR) gene
T4 328-339 protein denotes VDR protein
T5 526-529 protein denotes VDR
T6 530-536 DNA denotes 3'-UTR
T7 706-723 DNA denotes sequence variants
T8 874-904 DNA denotes message-destabilizing elements
T9 931-937 DNA denotes 3'-UTR
T10 945-968 RNA denotes vitamin D receptor mRNA
T11 991-1001 DNA denotes VDR 3'-UTR
T12 1051-1089 DNA denotes heterologous beta-globin reporter gene
T13 1172-1182 DNA denotes VDR 3'-UTR

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
10101249-1#39#57#gene7421 130-148 gene7421 denotes vitamin D receptor
10101249-1#59#62#gene7421 150-153 gene7421 denotes VDR
10101249-1#134#149#diseaseC0376358 225-240 diseaseC0376358 denotes prostate cancer
10101249-1#134#149#diseaseC0600139 225-240 diseaseC0600139 denotes prostate cancer
10101249-1#134#149#diseaseC0376358 225-240 diseaseC0376358 denotes prostate cancer
10101249-1#134#149#diseaseC0600139 225-240 diseaseC0600139 denotes prostate cancer
39#57#gene7421134#149#diseaseC0376358 10101249-1#39#57#gene7421 10101249-1#134#149#diseaseC0376358 associated_with vitamin D receptor,prostate cancer
39#57#gene7421134#149#diseaseC0600139 10101249-1#39#57#gene7421 10101249-1#134#149#diseaseC0600139 associated_with vitamin D receptor,prostate cancer
39#57#gene7421134#149#diseaseC0376358 10101249-1#39#57#gene7421 10101249-1#134#149#diseaseC0376358 associated_with vitamin D receptor,prostate cancer
39#57#gene7421134#149#diseaseC0600139 10101249-1#39#57#gene7421 10101249-1#134#149#diseaseC0600139 associated_with vitamin D receptor,prostate cancer
59#62#gene7421134#149#diseaseC0376358 10101249-1#59#62#gene7421 10101249-1#134#149#diseaseC0376358 associated_with VDR,prostate cancer
59#62#gene7421134#149#diseaseC0600139 10101249-1#59#62#gene7421 10101249-1#134#149#diseaseC0600139 associated_with VDR,prostate cancer
59#62#gene7421134#149#diseaseC0376358 10101249-1#59#62#gene7421 10101249-1#134#149#diseaseC0376358 associated_with VDR,prostate cancer
59#62#gene7421134#149#diseaseC0600139 10101249-1#59#62#gene7421 10101249-1#134#149#diseaseC0600139 associated_with VDR,prostate cancer

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-90 Sentence denotes Vitamin D receptor 3'-untranslated region polymorphisms: lack of effect on mRNA stability.
S2 91-285 Sentence denotes Allelic variation at the 3'-end of the vitamin D receptor (VDR) gene has been associated with a 3-5-fold increased risk of developing prostate cancer and with differences in bone mineralization.
S3 286-464 Sentence denotes This genetic diversity does not alter the VDR protein structurally, but instead may be a marker(s) of other, nearby polymorphisms that influence message stability or translation.
S4 465-661 Sentence denotes The work reported here was instigated to identify additional VDR 3'-UTR polymorphisms that may have functional significance and to then test whether these genetic variants alter message stability.
S5 662-814 Sentence denotes Initially, four novel, frequently occurring sequence variants were identified that associated with two common haplotypes that were described previously.
S6 815-969 Sentence denotes These common sequence variants were not found within three message-destabilizing elements that we mapped within the 3'-UTR of the vitamin D receptor mRNA.
S7 970-1112 Sentence denotes Furthermore, the two VDR 3'-UTR haplotypes conferred an identical half-life on a heterologous beta-globin reporter gene, in an in vitro assay.
S8 1113-1218 Sentence denotes We therefore conclude that common polymorphisms within the VDR 3'-UTR do not influence message stability.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 388-415 NP denotes other, nearby polymorphisms
C2 416-420 NP denotes that
C4 515-550 NP denotes additional VDR 3'-UTR polymorphisms
C5 551-555 NP denotes that
C3 515-588 NP denotes additional VDR 3'-UTR polymorphisms that may have functional significance
C6 614-636 NP denotes these genetic variants
C7 643-660 NP denotes message stability
C8 673-723 NP denotes four novel, frequently occurring sequence variants
C9 740-744 NP denotes that
C11 761-782 NP denotes two common haplotypes
C12 783-787 NP denotes that
C10 761-813 NP denotes two common haplotypes that were described previously
C13 815-845 NP denotes These common sequence variants
C14 868-904 NP denotes three message-destabilizing elements
C15 905-909 NP denotes that
C16 983-1012 NP denotes the two VDR 3'-UTR haplotypes
C17 1200-1217 NP denotes message stability
R1 C2 C1 coref-relat that,"other, nearby polymorphisms"
R2 C5 C4 coref-relat that,additional VDR 3'-UTR polymorphisms
R3 C6 C3 coref-ident these genetic variants,additional VDR 3'-UTR polymorphisms that may have functional significance
R4 C9 C8 coref-pron that,"four novel, frequently occurring sequence variants"
R5 C12 C11 coref-relat that,two common haplotypes
R6 C13 C8 coref-ident These common sequence variants,"four novel, frequently occurring sequence variants"
R7 C15 C14 coref-relat that,three message-destabilizing elements
R8 C16 C10 coref-ident the two VDR 3'-UTR haplotypes,two common haplotypes that were described previously
R9 C17 C7 coref-ident message stability,message stability

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-18 protein_family_or_group denotes Vitamin D receptor
T2 19-41 DNA_domain_or_region denotes 3'-untranslated region
T3 75-89 other_name denotes mRNA stability
T4 130-159 DNA_domain_or_region denotes vitamin D receptor (VDR) gene
T5 196-210 other_name denotes increased risk
T6 225-240 other_name denotes prostate cancer
T7 265-284 other_name denotes bone mineralization
T8 328-339 protein_molecule denotes VDR protein
T9 526-529 protein_family_or_group denotes VDR
T10 530-536 DNA_domain_or_region denotes 3'-UTR
T11 643-660 other_name denotes message stability
T12 706-723 DNA_family_or_group denotes sequence variants
T13 874-904 DNA_family_or_group denotes message-destabilizing elements
T14 931-937 DNA_domain_or_region denotes 3'-UTR
T15 945-968 RNA_family_or_group denotes vitamin D receptor mRNA
T16 991-1001 DNA_domain_or_region denotes VDR 3'-UTR
T17 1051-1089 DNA_domain_or_region denotes heterologous beta-globin reporter gene
T18 1097-1111 other_name denotes in vitro assay
T19 1172-1182 DNA_domain_or_region denotes VDR 3'-UTR
T20 1200-1217 other_name denotes message stability

DisGeNET

Id Subject Object Predicate Lexical cue
T0 150-153 gene:1594 denotes VDR
T1 225-240 disease:C0376358 denotes prostate cancer
T2 150-153 gene:1594 denotes VDR
T3 225-240 disease:C0600139 denotes prostate cancer
T4 150-153 gene:7421 denotes VDR
T5 225-240 disease:C0376358 denotes prostate cancer
T6 150-153 gene:7421 denotes VDR
T7 225-240 disease:C0600139 denotes prostate cancer
R1 T0 T1 associated_with VDR,prostate cancer
R2 T2 T3 associated_with VDR,prostate cancer
R3 T4 T5 associated_with VDR,prostate cancer
R4 T6 T7 associated_with VDR,prostate cancer

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 225-240 HP_0012125 denotes prostate cancer
T2 234-240 HP_0002664 denotes cancer

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 225-240 Disease denotes prostate cancer http://purl.obolibrary.org/obo/MONDO_0008315

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 225-233 Body_part denotes prostate http://purl.obolibrary.org/obo/UBERON_0002367
T2 265-269 Body_part denotes bone http://purl.obolibrary.org/obo/UBERON_0001474|http://purl.obolibrary.org/obo/UBERON_0002481

HP-phenotype

Id Subject Object Predicate Lexical cue hp_id
T1 225-240 Phenotype denotes prostate cancer HP:0012125