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PubMed:10092801 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 9-24 cell_type denotes fetal thymocyte
T2 87-97 protein denotes NF-kappa B
T3 324-334 protein denotes NF-kappa B
T4 345-360 protein denotes I kappa B alpha
T5 362-375 protein denotes mut-I kappa B
T6 428-438 protein denotes NF-kappa B
T7 489-505 cell_type denotes Fetal thymocytes
T8 542-555 protein denotes mut-I kappa B
T9 597-601 protein denotes CD44
T10 609-612 protein denotes CD4
T11 613-616 protein denotes CD8
T12 868-882 protein denotes TCR beta-chain
T13 963-976 protein denotes mut-I kappa B
T14 1064-1074 protein denotes NF-kappa B
T15 1144-1154 cell_type denotes thymocytes

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-109 Sentence denotes Impaired fetal thymocyte development after efficient adenovirus-mediated inhibition of NF-kappa B activation.
S2 110-231 Sentence denotes We introduce a new experimental system combining adenovirus-mediated gene transfer and fetal thymic organ culture (FTOC).
S3 232-488 Sentence denotes This system allowed us to efficiently express in developing thymocytes a mutant form of the NF-kappa B inhibitor I kappa B alpha (mut-I kappa B) and to study the maturation defects occurring when NF-kappa B activation is inhibited during fetal development.
S4 489-744 Sentence denotes Fetal thymocytes infected with adenovirus containing mut-I kappa B were found to develop normally until the CD44-CD25+, CD4-CD8- double-negative stage, while production of more mature double-positive and single-positive populations was strongly decreased.
S5 745-883 Sentence denotes Proliferation, as measured by the percentage of cells in cycle appeared normal, as did rearrangement and expression of the TCR beta-chain.
S6 884-1020 Sentence denotes However, apoptosis was much higher in FTOC infected with adenovirus containing mut-I kappa B than in FTOC infected with a control virus.
S7 1021-1196 Sentence denotes Taken together, these results suggest that NF-kappa B plays a crucial role in ensuring the differentiation and survival of thymocytes in the early stages of their development.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 87-108 NP denotes NF-kappa B activation
C2 123-230 NP denotes a new experimental system combining adenovirus-mediated gene transfer and fetal thymic organ culture (FTOC)
C3 232-243 NP denotes This system
C4 303-376 NP denotes a mutant form of the NF-kappa B inhibitor I kappa B alpha (mut-I kappa B)
C5 428-449 NP denotes NF-kappa B activation
C7 542-555 NP denotes mut-I kappa B
C6 520-555 NP denotes adenovirus containing mut-I kappa B
C9 963-976 NP denotes mut-I kappa B
C8 941-976 NP denotes adenovirus containing mut-I kappa B
C10 1144-1154 NP denotes thymocytes
C11 1178-1183 NP denotes their
R1 C3 C2 coref-ident This system,a new experimental system combining adenovirus-mediated gene transfer and fetal thymic organ culture (FTOC)
R2 C5 C1 coref-ident NF-kappa B activation,NF-kappa B activation
R3 C7 C4 coref-ident mut-I kappa B,a mutant form of the NF-kappa B inhibitor I kappa B alpha (mut-I kappa B)
R4 C9 C7 coref-ident mut-I kappa B,mut-I kappa B
R5 C8 C6 coref-ident adenovirus containing mut-I kappa B,adenovirus containing mut-I kappa B
R6 C11 C10 coref-pron their,thymocytes

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 9-24 cell_type denotes fetal thymocyte
T2 53-63 virus denotes adenovirus
T3 87-97 protein_molecule denotes NF-kappa B
T4 129-148 other_name denotes experimental system
T5 159-169 virus denotes adenovirus
T6 197-223 other_artificial_source denotes fetal thymic organ culture
T7 225-229 other_artificial_source denotes FTOC
T8 324-334 protein_complex denotes NF-kappa B
T9 345-360 protein_molecule denotes I kappa B alpha
T10 362-375 protein_molecule denotes mut-I kappa B
T11 428-438 protein_complex denotes NF-kappa B
T12 489-505 cell_type denotes Fetal thymocytes
T13 520-530 virus denotes adenovirus
T14 542-555 protein_molecule denotes mut-I kappa B
T15 597-601 protein_molecule denotes CD44
T16 609-612 protein_molecule denotes CD4
T17 613-616 protein_molecule denotes CD8
T18 666-688 other_name denotes mature double-positive
T19 693-720 other_name denotes single-positive populations
T20 868-882 protein_subunit denotes TCR beta-chain
T21 922-926 other_artificial_source denotes FTOC
T22 941-951 virus denotes adenovirus
T23 963-976 protein_molecule denotes mut-I kappa B
T24 985-989 other_artificial_source denotes FTOC
T25 1006-1019 virus denotes control virus
T26 1064-1074 protein_complex denotes NF-kappa B
T27 1144-1154 cell_type denotes thymocytes