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GlyCosmos6-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 84-89 Body_part denotes colon http://purl.obolibrary.org/obo/UBERON_0001155
T2 100-104 Body_part denotes cell http://purl.obolibrary.org/obo/CL_0000000
T3 129-134 Body_part denotes mucus http://purl.obolibrary.org/obo/UBERON_0000912
T4 730-735 Body_part denotes colon http://purl.obolibrary.org/obo/UBERON_0001155
T5 746-750 Body_part denotes cell http://purl.obolibrary.org/obo/CL_0000000
T6 846-850 Body_part denotes cell http://purl.obolibrary.org/obo/CL_0000000
T7 1076-1081 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T8 1274-1278 Body_part denotes cell http://purl.obolibrary.org/obo/CL_0000000
T9 1326-1332 Body_part denotes system http://purl.obolibrary.org/obo/UBERON_0000467

NCBITAXON

Id Subject Object Predicate Lexical cue
T1 84-89 http://purl.bioontology.org/ontology/NCBITAXON/1542223 denotes colon
T2 730-735 http://purl.bioontology.org/ontology/NCBITAXON/1542223 denotes colon

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 84-89 http://purl.obolibrary.org/obo/MAT_0000526 denotes colon
T2 730-735 http://purl.obolibrary.org/obo/MAT_0000526 denotes colon
T3 1076-1081 http://purl.obolibrary.org/obo/MAT_0000083 denotes blood
T4 1076-1081 http://purl.obolibrary.org/obo/MAT_0000315 denotes blood

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-111 Sentence denotes CFTR expression does not influence glycosylation of an epitope-tagged MUC1 mucin in colon carcinoma cell lines.
TextSentencer_T2 112-371 Sentence denotes The cause of the mucus clearance problems associated with cystic fibrosis remains poorly understood though it has been suggested that mucin hypersecretion, dehydration of mucins, and biochemical abnormalities in the glycosylation of mucins may be responsible.
TextSentencer_T3 372-613 Sentence denotes Since the biochemical and biophysical properties of a mucin are dependent on O-glycosylation, our aim was to evaluate the O-glycosylation of a single mucin gene product in matched pairs of cells that differed with respect to CFTR expression.
TextSentencer_T4 614-772 Sentence denotes An epitope-tagged MUC1 mucin cDNA (MUC1F) was used to detect variation in mucin glycosylation in stably transfected colon carcinoma cell lines HT29 and Caco2.
TextSentencer_T5 773-935 Sentence denotes The glycosylation of MUC1F mucin was evaluated in matched pairs of Caco2 cell lines that either express wild-type CFTR or have spontaneously lost CFTR expression.
TextSentencer_T6 936-1131 Sentence denotes The general glycosylation pattern of MUC1F was evaluated by determining its reactivity with a series of monoclonal antibodies against known blood group and tumor-associated carbohydrate antigens.
TextSentencer_T7 1132-1285 Sentence denotes Metabolic labeling experiments were used to estimate the gross levels of glycosylation and sulfation of MUC1F mucin in these matched pairs of cell lines.
TextSentencer_T8 1286-1486 Sentence denotes Expression of CFTR in this experimental system did not affect the gross levels of glycosylation or sulfation of the MUC1F mucin nor the types of carbohydrates structures attached to the MUC1F protein.
T1 0-111 Sentence denotes CFTR expression does not influence glycosylation of an epitope-tagged MUC1 mucin in colon carcinoma cell lines.
T2 112-371 Sentence denotes The cause of the mucus clearance problems associated with cystic fibrosis remains poorly understood though it has been suggested that mucin hypersecretion, dehydration of mucins, and biochemical abnormalities in the glycosylation of mucins may be responsible.
T3 372-613 Sentence denotes Since the biochemical and biophysical properties of a mucin are dependent on O-glycosylation, our aim was to evaluate the O-glycosylation of a single mucin gene product in matched pairs of cells that differed with respect to CFTR expression.
T4 614-772 Sentence denotes An epitope-tagged MUC1 mucin cDNA (MUC1F) was used to detect variation in mucin glycosylation in stably transfected colon carcinoma cell lines HT29 and Caco2.
T5 773-935 Sentence denotes The glycosylation of MUC1F mucin was evaluated in matched pairs of Caco2 cell lines that either express wild-type CFTR or have spontaneously lost CFTR expression.
T6 936-1131 Sentence denotes The general glycosylation pattern of MUC1F was evaluated by determining its reactivity with a series of monoclonal antibodies against known blood group and tumor-associated carbohydrate antigens.
T7 1132-1285 Sentence denotes Metabolic labeling experiments were used to estimate the gross levels of glycosylation and sulfation of MUC1F mucin in these matched pairs of cell lines.
T8 1286-1486 Sentence denotes Expression of CFTR in this experimental system did not affect the gross levels of glycosylation or sulfation of the MUC1F mucin nor the types of carbohydrates structures attached to the MUC1F protein.
T1 0-111 Sentence denotes CFTR expression does not influence glycosylation of an epitope-tagged MUC1 mucin in colon carcinoma cell lines.
T2 112-371 Sentence denotes The cause of the mucus clearance problems associated with cystic fibrosis remains poorly understood though it has been suggested that mucin hypersecretion, dehydration of mucins, and biochemical abnormalities in the glycosylation of mucins may be responsible.
T3 372-613 Sentence denotes Since the biochemical and biophysical properties of a mucin are dependent on O-glycosylation, our aim was to evaluate the O-glycosylation of a single mucin gene product in matched pairs of cells that differed with respect to CFTR expression.
T4 614-772 Sentence denotes An epitope-tagged MUC1 mucin cDNA (MUC1F) was used to detect variation in mucin glycosylation in stably transfected colon carcinoma cell lines HT29 and Caco2.
T5 773-935 Sentence denotes The glycosylation of MUC1F mucin was evaluated in matched pairs of Caco2 cell lines that either express wild-type CFTR or have spontaneously lost CFTR expression.
T6 936-1131 Sentence denotes The general glycosylation pattern of MUC1F was evaluated by determining its reactivity with a series of monoclonal antibodies against known blood group and tumor-associated carbohydrate antigens.
T7 1132-1285 Sentence denotes Metabolic labeling experiments were used to estimate the gross levels of glycosylation and sulfation of MUC1F mucin in these matched pairs of cell lines.
T8 1286-1486 Sentence denotes Expression of CFTR in this experimental system did not affect the gross levels of glycosylation or sulfation of the MUC1F mucin nor the types of carbohydrates structures attached to the MUC1F protein.

GlyCosmos6-CLO

Id Subject Object Predicate Lexical cue
T1 100-104 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T2 561-566 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T3 746-750 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T4 757-761 http://purl.obolibrary.org/obo/CLO_0004283 denotes HT29
T5 766-771 http://purl.obolibrary.org/obo/CLO_0002172 denotes Caco2
T6 766-771 http://purl.obolibrary.org/obo/CLO_0051943 denotes Caco2
T7 766-771 http://purl.obolibrary.org/obo/CLO_0051958 denotes Caco2
T8 766-771 http://purl.obolibrary.org/obo/CLO_0051960 denotes Caco2
T9 840-850 http://purl.obolibrary.org/obo/CLO_0002172 denotes Caco2 cell
T10 846-850 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T11 1142-1150 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeling
T12 1274-1278 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 84-99 Disease denotes colon carcinoma http://purl.obolibrary.org/obo/MONDO_0002032
T2 170-185 Disease denotes cystic fibrosis http://purl.obolibrary.org/obo/MONDO_0009061
T3 730-745 Disease denotes colon carcinoma http://purl.obolibrary.org/obo/MONDO_0002032
T4 1092-1097 Disease denotes tumor http://purl.obolibrary.org/obo/MONDO_0005070

ICD10

Id Subject Object Predicate Lexical cue
T1 170-185 http://purl.bioontology.org/ontology/ICD10/E84 denotes cystic fibrosis
T2 170-185 http://purl.bioontology.org/ontology/ICD10/E84.9 denotes cystic fibrosis

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 84-89 FMAID:14543 denotes colon
_T2 84-89 FMAID:104231 denotes colon
_T3 129-134 FMAID:165042 denotes mucus
_T4 528-532 FMAID:198663 denotes gene
_T5 561-566 FMAID:169002 denotes cells
_T6 561-566 FMAID:68646 denotes cells
_T7 730-735 FMAID:14543 denotes colon
_T8 730-735 FMAID:104231 denotes colon
_T9 1051-1061 FMAID:167180 denotes antibodies
_T10 1076-1081 FMAID:256053 denotes blood
_T11 1109-1121 FMAID:82737 denotes carbohydrate
_T12 1109-1121 FMAID:197276 denotes carbohydrate
_T13 1431-1444 FMAID:197276 denotes carbohydrates
_T14 1431-1444 FMAID:82737 denotes carbohydrates
_T15 1478-1485 FMAID:67257 denotes protein
_T16 1478-1485 FMAID:165447 denotes protein

uniprot-human

Id Subject Object Predicate Lexical cue
T1 0-4 http://www.uniprot.org/uniprot/P13569 denotes CFTR
T2 597-601 http://www.uniprot.org/uniprot/P13569 denotes CFTR
T3 887-891 http://www.uniprot.org/uniprot/P13569 denotes CFTR
T4 919-923 http://www.uniprot.org/uniprot/P13569 denotes CFTR
T5 1300-1304 http://www.uniprot.org/uniprot/P13569 denotes CFTR
T6 70-74 http://www.uniprot.org/uniprot/Q9BXA4 denotes MUC1
T7 632-636 http://www.uniprot.org/uniprot/Q9BXA4 denotes MUC1

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 0-4 http://www.uniprot.org/uniprot/P26361 denotes CFTR
T2 597-601 http://www.uniprot.org/uniprot/P26361 denotes CFTR
T3 887-891 http://www.uniprot.org/uniprot/P26361 denotes CFTR
T4 919-923 http://www.uniprot.org/uniprot/P26361 denotes CFTR
T5 1300-1304 http://www.uniprot.org/uniprot/P26361 denotes CFTR

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 90-99 http://purl.bioontology.org/ontology/NCBITAXON/166034 denotes carcinoma
T3 736-745 http://purl.bioontology.org/ontology/NCBITAXON/166034 denotes carcinoma

GO-BP

Id Subject Object Predicate Lexical cue
T1 35-48 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T2 328-341 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T3 451-464 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T4 496-509 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T5 694-707 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T6 777-790 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T7 948-961 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T8 1205-1218 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T9 1368-1381 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T10 1132-1141 http://purl.obolibrary.org/obo/GO_0008152 denotes Metabolic
T11 1223-1232 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfation
T12 1385-1394 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfation

GO-MF

Id Subject Object Predicate Lexical cue
T1 1051-1061 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies

GO-CC

Id Subject Object Predicate Lexical cue
T1 100-104 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T2 746-750 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T3 846-850 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T4 561-566 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T5 1414-1417 http://purl.obolibrary.org/obo/GO_0005731 denotes nor

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 84-89 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colon
T2 730-735 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colon
T3 129-134 http://purl.obolibrary.org/obo/UBERON_0000912 denotes mucus
T4 1076-1081 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

EDAM-topics

Id Subject Object Predicate Lexical cue
T1 398-409 http://edamontology.org/topic_3306 denotes biophysical
T2 643-647 http://edamontology.org/topic_3512 denotes cDNA
T3 1109-1121 http://edamontology.org/topic_0152 denotes carbohydrate
T4 1122-1130 http://edamontology.org/topic_2830 denotes antigens
T5 1132-1141 http://edamontology.org/topic_3407 denotes Metabolic
T6 1431-1444 http://edamontology.org/topic_0152 denotes carbohydrates
T7 1478-1485 http://edamontology.org/topic_0078 denotes protein

EDAM-DFO

Id Subject Object Predicate Lexical cue
T1 528-540 http://edamontology.org/data_0896 denotes gene product
T2 544-551 http://edamontology.org/format_1990 denotes matched
T3 552-557 http://edamontology.org/format_1996 denotes pairs
T4 668-674 http://edamontology.org/operation_2423 denotes detect
T5 823-830 http://edamontology.org/format_1990 denotes matched
T6 831-836 http://edamontology.org/format_1996 denotes pairs
T7 940-947 http://edamontology.org/operation_3429 denotes general
T8 1132-1150 http://edamontology.org/operation_3715 denotes Metabolic labeling
T9 1257-1264 http://edamontology.org/format_1990 denotes matched
T10 1265-1270 http://edamontology.org/format_1996 denotes pairs
T11 1422-1427 http://edamontology.org/data_2100 denotes types
T12 1431-1455 http://edamontology.org/data_1462 denotes carbohydrates structures
T13 1445-1455 http://edamontology.org/data_0883 denotes structures
T14 1478-1485 http://edamontology.org/data_1467 denotes protein
T15 1478-1485 http://edamontology.org/format_1208 denotes protein

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
10089213-0#0#4#gene1080 0-4 gene1080 denotes CFTR
10089213-0#70#74#gene4582 70-74 gene4582 denotes MUC1
10089213-0#84#99#diseaseC0699790 84-99 diseaseC0699790 denotes colon carcinoma
0#4#gene108084#99#diseaseC0699790 10089213-0#0#4#gene1080 10089213-0#84#99#diseaseC0699790 associated_with CFTR,colon carcinoma
70#74#gene458284#99#diseaseC0699790 10089213-0#70#74#gene4582 10089213-0#84#99#diseaseC0699790 associated_with MUC1,colon carcinoma

GlycoBiology-MAT

Id Subject Object Predicate Lexical cue
T1 84-89 http://purl.obolibrary.org/obo/MAT_0000526 denotes colon
T2 730-735 http://purl.obolibrary.org/obo/MAT_0000526 denotes colon
T3 1076-1081 http://purl.obolibrary.org/obo/MAT_0000083 denotes blood
T4 1076-1081 http://purl.obolibrary.org/obo/MAT_0000315 denotes blood

GlycoBiology-Motifs

Id Subject Object Predicate Lexical cue
T1 1076-1087 http://rdf.glycoinfo.org/glycan/G00066MO denotes blood group

GlycoBiology-Epitope

Id Subject Object Predicate Lexical cue
PD-GlycoEpitope-B_T1 1142-1150 id denotes labeling

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 1076-1081 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
PD-UBERON-AE-B_T2 84-89 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colon
PD-UBERON-AE-B_T3 730-735 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colon
PD-UBERON-AE-B_T4 129-134 http://purl.obolibrary.org/obo/UBERON_0000912 denotes mucus

DisGeNET

Id Subject Object Predicate Lexical cue
T0 70-74 gene:4582 denotes MUC1
T1 84-99 disease:C0699790 denotes colon carcinoma
T2 632-636 gene:4582 denotes MUC1
T3 730-745 disease:C0699790 denotes colon carcinoma
R1 T0 T1 associated_with MUC1,colon carcinoma
R2 T2 T3 associated_with MUC1,colon carcinoma

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 268-279 HP_0001944 denotes dehydration
T2 307-341 HP_0012345 denotes abnormalities in the glycosylation
T3 1092-1097 HP_0002664 denotes tumor