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PubMed:10082134 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 87-109 cell_type denotes sickle red blood cells
T2 144-169 cell_line denotes monocyte-like HL-60 cells
T3 233-255 cell_type denotes sickle red blood cells
T4 257-263 cell_type denotes SS RBC
T5 269-279 cell_type denotes leukocytes
T6 357-367 cell_type denotes leukocytes
T7 594-632 cell_type denotes human umbilical vein endothelial cells
T8 634-639 cell_type denotes HUVEC
T9 716-720 protein denotes CAMs
T10 722-728 protein denotes VCAM-1
T11 748-768 protein denotes transcription factor
T12 769-778 protein denotes NF-kappaB
T13 806-811 cell_type denotes HUVEC
T14 887-925 protein denotes mitogen-activated protein (MAP) kinase
T15 934-938 protein denotes ERK2
T16 971-975 protein denotes ERK1
T17 988-992 protein denotes ERK2
T18 1024-1039 protein denotes upstream kinase
T19 1047-1051 protein denotes MAPK
T20 1075-1085 protein denotes MAP kinase
T21 1190-1199 protein denotes NF-kappaB
T22 1215-1221 protein denotes VCAM-1
T23 1258-1264 protein denotes VCAM-1
T24 1282-1288 cell_type denotes SS RBC
T25 1316-1331 protein denotes VCAM-1 antibody
T26 1434-1459 cell_line denotes monocyte-like HL-60 cells
T27 1508-1552 protein denotes platelet endothelial cell adhesion molecules
T28 1554-1561 protein denotes PECAM-1
T29 1598-1607 cell_type denotes monocytes
T30 1640-1647 protein denotes PECAM-1
T31 1673-1680 protein denotes PECAM-1
T32 1715-1724 cell_type denotes monocytes
T33 1951-1957 protein denotes VCAM-1
T34 1961-1966 cell_type denotes HUVEC
T35 2000-2010 protein denotes MAP kinase
T36 2015-2024 protein denotes NF-kappaB
T37 2055-2062 protein denotes PECAM-1
T38 2099-2102 protein denotes PKC
T39 2212-2218 cell_type denotes SS RBC
T40 2220-2227 protein denotes PECAM-1
T41 2295-2304 cell_type denotes monocytes

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
10082134-11#192#199#gene5175 2055-2062 gene5175 denotes PECAM-1
10082134-11#236#239#gene112476 2099-2102 gene112476 denotes PKC
10082134-11#88#94#diseaseC1861821 1951-1957 diseaseC1861821 denotes VCAM-1
10082134-11#88#94#diseaseC2919945 1951-1957 diseaseC2919945 denotes VCAM-1
10082134-11#88#94#diseaseC1861821 1951-1957 diseaseC1861821 denotes VCAM-1
10082134-11#88#94#diseaseC2919945 1951-1957 diseaseC2919945 denotes VCAM-1
10082134-4#139#142#gene801 716-719 gene801 denotes CAM
10082134-4#139#142#gene805 716-719 gene805 denotes CAM
10082134-4#139#142#gene808 716-719 gene808 denotes CAM
10082134-4#139#142#gene79823 716-719 gene79823 denotes CAM
10082134-4#139#142#gene889 716-719 gene889 denotes CAM
10082134-4#145#151#diseaseC1861821 722-728 diseaseC1861821 denotes VCAM-1
10082134-4#145#151#diseaseC2919945 722-728 diseaseC2919945 denotes VCAM-1
10082134-4#145#151#diseaseC1861821 722-728 diseaseC1861821 denotes VCAM-1
10082134-4#145#151#diseaseC2919945 722-728 diseaseC2919945 denotes VCAM-1
10082134-4#145#151#diseaseC1861821 722-728 diseaseC1861821 denotes VCAM-1
10082134-4#145#151#diseaseC2919945 722-728 diseaseC2919945 denotes VCAM-1
10082134-4#145#151#diseaseC1861821 722-728 diseaseC1861821 denotes VCAM-1
10082134-4#145#151#diseaseC2919945 722-728 diseaseC2919945 denotes VCAM-1
10082134-4#145#151#diseaseC1861821 722-728 diseaseC1861821 denotes VCAM-1
10082134-4#145#151#diseaseC2919945 722-728 diseaseC2919945 denotes VCAM-1
10082134-7#51#54#gene106480993 1285-1288 gene106480993 denotes RBC
10082134-7#24#30#diseaseC1861821 1258-1264 diseaseC1861821 denotes VCAM-1
10082134-7#24#30#diseaseC2919945 1258-1264 diseaseC2919945 denotes VCAM-1
192#199#gene517588#94#diseaseC1861821 10082134-11#192#199#gene5175 10082134-11#88#94#diseaseC1861821 associated_with PECAM-1,VCAM-1
192#199#gene517588#94#diseaseC2919945 10082134-11#192#199#gene5175 10082134-11#88#94#diseaseC2919945 associated_with PECAM-1,VCAM-1
192#199#gene517588#94#diseaseC1861821 10082134-11#192#199#gene5175 10082134-11#88#94#diseaseC1861821 associated_with PECAM-1,VCAM-1
192#199#gene517588#94#diseaseC2919945 10082134-11#192#199#gene5175 10082134-11#88#94#diseaseC2919945 associated_with PECAM-1,VCAM-1
236#239#gene11247688#94#diseaseC1861821 10082134-11#236#239#gene112476 10082134-11#88#94#diseaseC1861821 associated_with PKC,VCAM-1
236#239#gene11247688#94#diseaseC2919945 10082134-11#236#239#gene112476 10082134-11#88#94#diseaseC2919945 associated_with PKC,VCAM-1
236#239#gene11247688#94#diseaseC1861821 10082134-11#236#239#gene112476 10082134-11#88#94#diseaseC1861821 associated_with PKC,VCAM-1
236#239#gene11247688#94#diseaseC2919945 10082134-11#236#239#gene112476 10082134-11#88#94#diseaseC2919945 associated_with PKC,VCAM-1
139#142#gene801145#151#diseaseC1861821 10082134-4#139#142#gene801 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene801145#151#diseaseC2919945 10082134-4#139#142#gene801 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene801145#151#diseaseC1861821 10082134-4#139#142#gene801 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene801145#151#diseaseC2919945 10082134-4#139#142#gene801 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene801145#151#diseaseC1861821 10082134-4#139#142#gene801 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene801145#151#diseaseC2919945 10082134-4#139#142#gene801 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene801145#151#diseaseC1861821 10082134-4#139#142#gene801 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene801145#151#diseaseC2919945 10082134-4#139#142#gene801 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene801145#151#diseaseC1861821 10082134-4#139#142#gene801 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene801145#151#diseaseC2919945 10082134-4#139#142#gene801 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene805145#151#diseaseC1861821 10082134-4#139#142#gene805 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene805145#151#diseaseC2919945 10082134-4#139#142#gene805 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene805145#151#diseaseC1861821 10082134-4#139#142#gene805 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene805145#151#diseaseC2919945 10082134-4#139#142#gene805 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene805145#151#diseaseC1861821 10082134-4#139#142#gene805 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene805145#151#diseaseC2919945 10082134-4#139#142#gene805 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene805145#151#diseaseC1861821 10082134-4#139#142#gene805 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene805145#151#diseaseC2919945 10082134-4#139#142#gene805 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene805145#151#diseaseC1861821 10082134-4#139#142#gene805 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene805145#151#diseaseC2919945 10082134-4#139#142#gene805 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene808145#151#diseaseC1861821 10082134-4#139#142#gene808 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene808145#151#diseaseC2919945 10082134-4#139#142#gene808 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene808145#151#diseaseC1861821 10082134-4#139#142#gene808 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene808145#151#diseaseC2919945 10082134-4#139#142#gene808 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene808145#151#diseaseC1861821 10082134-4#139#142#gene808 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene808145#151#diseaseC2919945 10082134-4#139#142#gene808 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene808145#151#diseaseC1861821 10082134-4#139#142#gene808 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene808145#151#diseaseC2919945 10082134-4#139#142#gene808 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene808145#151#diseaseC1861821 10082134-4#139#142#gene808 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene808145#151#diseaseC2919945 10082134-4#139#142#gene808 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene79823145#151#diseaseC1861821 10082134-4#139#142#gene79823 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene79823145#151#diseaseC2919945 10082134-4#139#142#gene79823 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene79823145#151#diseaseC1861821 10082134-4#139#142#gene79823 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene79823145#151#diseaseC2919945 10082134-4#139#142#gene79823 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene79823145#151#diseaseC1861821 10082134-4#139#142#gene79823 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene79823145#151#diseaseC2919945 10082134-4#139#142#gene79823 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene79823145#151#diseaseC1861821 10082134-4#139#142#gene79823 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene79823145#151#diseaseC2919945 10082134-4#139#142#gene79823 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene79823145#151#diseaseC1861821 10082134-4#139#142#gene79823 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene79823145#151#diseaseC2919945 10082134-4#139#142#gene79823 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene889145#151#diseaseC1861821 10082134-4#139#142#gene889 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene889145#151#diseaseC2919945 10082134-4#139#142#gene889 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene889145#151#diseaseC1861821 10082134-4#139#142#gene889 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene889145#151#diseaseC2919945 10082134-4#139#142#gene889 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene889145#151#diseaseC1861821 10082134-4#139#142#gene889 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene889145#151#diseaseC2919945 10082134-4#139#142#gene889 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene889145#151#diseaseC1861821 10082134-4#139#142#gene889 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene889145#151#diseaseC2919945 10082134-4#139#142#gene889 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
139#142#gene889145#151#diseaseC1861821 10082134-4#139#142#gene889 10082134-4#145#151#diseaseC1861821 associated_with CAM,VCAM-1
139#142#gene889145#151#diseaseC2919945 10082134-4#139#142#gene889 10082134-4#145#151#diseaseC2919945 associated_with CAM,VCAM-1
51#54#gene10648099324#30#diseaseC1861821 10082134-7#51#54#gene106480993 10082134-7#24#30#diseaseC1861821 associated_with RBC,VCAM-1
51#54#gene10648099324#30#diseaseC2919945 10082134-7#51#54#gene106480993 10082134-7#24#30#diseaseC2919945 associated_with RBC,VCAM-1

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 87-109 NP denotes sickle red blood cells
C2 114-169 NP denotes transendothelial migration of monocyte-like HL-60 cells
C3 184-207 NP denotes PAF-receptor antagonist
C4 224-231 NP denotes hypoxia
C5 233-264 NP denotes sickle red blood cells (SS RBC)
C6 269-279 NP denotes leukocytes
C7 357-367 NP denotes leukocytes
C9 457-464 NP denotes hypoxia
C8 413-464 NP denotes the cellular signaling pathway(s) caused by hypoxia
C11 531-538 NP denotes hypoxia
C10 499-538 NP denotes CoCl2 as a mimetic molecule for hypoxia
C12 548-575 NP denotes cellular signaling pathways
C13 594-640 NP denotes human umbilical vein endothelial cells (HUVEC)
C14 704-729 NP denotes a subset of CAMs (VCAM-1)
C15 748-778 NP denotes transcription factor NF-kappaB
C16 806-811 NP denotes HUVEC
C17 826-831 NP denotes CoCl2
C18 887-938 NP denotes mitogen-activated protein (MAP) kinase isoform ERK2
C19 988-992 NP denotes ERK2
C20 1075-1085 NP denotes MAP kinase
C21 1258-1264 NP denotes VCAM-1
C22 1347-1352 NP denotes CoCl2
C23 1404-1459 NP denotes transendothelial migration of monocyte-like HL-60 cells
C25 1508-1562 NP denotes platelet endothelial cell adhesion molecules (PECAM-1)
C24 1489-1562 NP denotes phosphorylation of platelet endothelial cell adhesion molecules (PECAM-1)
C26 1598-1607 NP denotes monocytes
C27 1640-1647 NP denotes PECAM-1
C28 1673-1680 NP denotes PECAM-1
C29 1715-1724 NP denotes monocytes
C30 1740-1745 NP denotes CoCl2
C31 1951-1957 NP denotes VCAM-1
C32 1961-1966 NP denotes HUVEC
C33 2000-2010 NP denotes MAP kinase
C34 2015-2024 NP denotes NF-kappaB
C36 2055-2062 NP denotes PECAM-1
C35 2032-2062 NP denotes the phosphorylation of PECAM-1
C37 2121-2144 NP denotes PAF-receptor antagonist
C38 2212-2218 NP denotes SS RBC
C39 2220-2243 NP denotes PECAM-1 phosphorylation
C40 2295-2304 NP denotes monocytes
R1 C5 C1 coref-ident sickle red blood cells (SS RBC),sickle red blood cells
R2 C7 C6 coref-ident leukocytes,leukocytes
R3 C9 C4 coref-ident hypoxia,hypoxia
R4 C11 C9 coref-ident hypoxia,hypoxia
R5 C12 C8 coref-ident cellular signaling pathways,the cellular signaling pathway(s) caused by hypoxia
R6 C16 C13 coref-ident HUVEC,human umbilical vein endothelial cells (HUVEC)
R7 C17 C10 coref-ident CoCl2,CoCl2 as a mimetic molecule for hypoxia
R8 C19 C18 coref-ident ERK2,mitogen-activated protein (MAP) kinase isoform ERK2
R9 C21 C14 coref-ident VCAM-1,a subset of CAMs (VCAM-1)
R10 C22 C17 coref-ident CoCl2,CoCl2
R11 C23 C2 coref-ident transendothelial migration of monocyte-like HL-60 cells,transendothelial migration of monocyte-like HL-60 cells
R12 C27 C25 coref-ident PECAM-1,platelet endothelial cell adhesion molecules (PECAM-1)
R13 C28 C27 coref-ident PECAM-1,PECAM-1
R14 C29 C26 coref-ident monocytes,monocytes
R15 C30 C22 coref-ident CoCl2,CoCl2
R16 C31 C21 coref-ident VCAM-1,VCAM-1
R17 C32 C16 coref-ident HUVEC,HUVEC
R18 C33 C20 coref-ident MAP kinase,MAP kinase
R19 C34 C15 coref-ident NF-kappaB,transcription factor NF-kappaB
R20 C36 C28 coref-ident PECAM-1,PECAM-1
R21 C35 C24 coref-ident the phosphorylation of PECAM-1,phosphorylation of platelet endothelial cell adhesion molecules (PECAM-1)
R22 C37 C3 coref-ident PAF-receptor antagonist,PAF-receptor antagonist
R23 C38 C5 coref-ident SS RBC,sickle red blood cells (SS RBC)
R24 C39 C35 coref-ident PECAM-1 phosphorylation,the phosphorylation of PECAM-1
R25 C40 C29 coref-ident monocytes,monocytes

semrep-sample

Id Subject Object Predicate Lexical cue
E1-ti-1 0-15 cui:C0056036 denotes Cobalt chloride
E2-ti-1 16-23 cui:C0205263 denotes induced
E3-ti-1 24-33 cui:C0037083 denotes signaling
E4-ti-1 37-48 cui:C0014257 denotes endothelium
E5-ti-1 64-73 cui:C0205217 denotes augmented
E6-ti-1 94-109 cui:C1277078 denotes red blood cells
E7-ti-1 144-152 cui:C0026473 denotes monocyte
E8-ti-1 158-169 cui:C0282549 denotes HL-60 cells
E9-ti-1 184-187 cui:C1515877 denotes PAF
E10-ti-1 184-187 cui:C1521761 denotes PAF
E11-ti-1 188-196 cui:C0597357 denotes receptor
E12-ti-1 184-207 cui:C0032178 denotes PAF-receptor antagonist
E1-ab-1 212-220 cui:C0871261 denotes response
E2-ab-1 224-231 cui:C0242184 denotes hypoxia
E3-ab-1 240-255 cui:C0014792 denotes red blood cells
E4-ab-1 269-279 cui:C0023516 denotes leukocytes
E5-ab-1 288-297 cui:C0205217 denotes increased
E6-ab-1 315-335 cui:C0014261 denotes vascular endothelium
E7-ab-1 343-353 cui:C0277921 denotes diapedesis
E8-ab-1 357-367 cui:C0023516 denotes leukocytes
E9-ab-1 380-392 cui:C0005847 denotes blood vessel
E10-ab-1 393-402 cui:C0442805 denotes increases
E1-ab-2 417-425 cui:C0178539 denotes cellular
E2-ab-2 426-443 cui:C0086982 denotes signaling pathway
E3-ab-2 457-464 cui:C0242184 denotes hypoxia
E4-ab-2 468-474 cui:C0205169 denotes poorly
E1-ab-3 510-517 cui:C0920591 denotes mimetic
E2-ab-3 518-526 cui:C0567416 denotes molecule
E3-ab-3 531-538 cui:C0242184 denotes hypoxia
E4-ab-3 548-556 cui:C0178539 denotes cellular
E5-ab-3 557-575 cui:C0037080 denotes signaling pathways
E1-ab-4 594-599 cui:C0020114 denotes human
E2-ab-4 600-614 cui:C0041637 denotes umbilical vein
E3-ab-4 615-632 cui:C0225336 denotes endothelial cells
E4-ab-4 682-689 cui:C0205148 denotes surface
E5-ab-4 690-700 cui:C0185117 denotes expression
E6-ab-4 716-720 cui:C1328260 denotes CAMs
E7-ab-4 722-728 cui:C0078056 denotes VCAM-1
E8-ab-4 748-768 cui:C0040648 denotes transcription factor
E9-ab-4 769-778 cui:C0079904 denotes NF-kappaB
E10-ab-4 786-802 cui:C1518434 denotes nuclear extracts
E11-ab-4 806-811 cui:C0020114 denotes HUVEC
E12-ab-4 806-811 cui:C0041637 denotes HUVEC
E13-ab-4 806-811 cui:C0225336 denotes HUVEC
E1-ab-5 837-843 cui:C0015127 denotes caused
E2-ab-5 844-849 cui:C0040223 denotes time-
E3-ab-5 859-883 cui:C1519726 denotes tyrosine phosphorylation
E4-ab-5 887-925 cui:C0752312 denotes mitogen-activated protein (MAP) kinase
E5-ab-5 934-938 cui:C1366882 denotes ERK2
E6-ab-5 971-975 cui:C1366765 denotes ERK1
E7-ab-5 988-992 cui:C1366882 denotes ERK2
E8-ab-5 1000-1009 cui:C1548789 denotes preferred
E9-ab-5 1024-1039 cui:C0541149 denotes upstream kinase
E10-ab-5 1047-1051 cui:C0752312 denotes MAPK
E11-ab-5 1052-1059 cui:C0243123 denotes pathway
T1 1010-1019 INTERACTS_WITH denotes substrate
E1-ab-6 1061-1071 cui:C0243077 denotes Inhibitors
E2-ab-6 1075-1085 cui:C0752312 denotes MAP kinase
E3-ab-6 1087-1094 cui:C0298346 denotes PD98059
E4-ab-6 1108-1118 cui:C1515877 denotes activating
E5-ab-6 1119-1125 cui:C1521761 denotes factor
E6-ab-6 1133-1141 cui:C0597357 denotes receptor
E7-ab-6 1099-1152 cui:C0032178 denotes platelet-activating factor (PAF)- receptor antagonist
E8-ab-6 1182-1189 cui:C0205263 denotes induced
E9-ab-6 1190-1199 cui:C0079904 denotes NF-kappaB
E10-ab-6 1215-1221 cui:C0078056 denotes VCAM-1
E11-ab-6 1222-1232 cui:C0185117 denotes expression
E1-ab-7 1234-1243 cui:C0205217 denotes Augmented
E2-ab-7 1244-1254 cui:C0185117 denotes expression
E3-ab-7 1258-1264 cui:C0078056 denotes VCAM-1
E4-ab-7 1272-1281 cui:C0205217 denotes increased
E5-ab-7 1282-1288 cui:C0392756 denotes SS RBC
E6-ab-7 1282-1288 cui:C0005767 denotes SS RBC
E7-ab-7 1282-1288 cui:C0221283 denotes SS RBC
E8-ab-7 1289-1297 cui:C0001511 denotes adhesion
E9-ab-7 1316-1322 cui:C0078056 denotes VCAM-1
E10-ab-7 1323-1331 cui:C0003241 denotes antibody
T2 1265-1268 CAUSES denotes led
T3 1282-1297 LOCATION_OF denotes SS RBC adhesion
E1-ab-8 1362-1365 cui:C0205448 denotes two
E2-ab-8 1380-1388 cui:C0442805 denotes increase
E3-ab-8 1396-1400 cui:C1521828 denotes rate
E4-ab-8 1434-1442 cui:C0026473 denotes monocyte
E5-ab-8 1448-1459 cui:C0282549 denotes HL-60 cells
E6-ab-8 1477-1485 cui:C0442805 denotes increase
E7-ab-8 1489-1504 cui:C0031715 denotes phosphorylation
E8-ab-8 1508-1552 cui:C0081939 denotes platelet endothelial cell adhesion molecules
T4 1477-1485 AUGMENTS denotes increase
E1-ab-9 1598-1607 cui:C0026473 denotes monocytes
E2-ab-9 1628-1636 cui:C0003241 denotes antibody
E3-ab-9 1640-1647 cui:C0081939 denotes PECAM-1
T5 1612-1621 DISRUPTS denotes inhibited
E1-ab-10 1654-1669 cui:C0031715 denotes phosphorylation
E2-ab-10 1673-1680 cui:C0081939 denotes PECAM-1
E3-ab-10 1715-1724 cui:C0026473 denotes monocytes
E4-ab-10 1728-1736 cui:C0871261 denotes response
E5-ab-10 1764-1788 cui:C0138864 denotes protein kinase inhibitor
E6-ab-10 1790-1799 cui:C0119104 denotes GF109203X
E7-ab-10 1818-1847 cui:C1514560 denotes protein phosphatase inhibitor
E8-ab-10 1849-1860 cui:C0054549 denotes Calyculin A
T6 1654-1669 INTERACTS_WITH denotes phosphorylation
T7 1751-1760 DISRUPTS denotes inhibited
T8 1805-1814 AUGMENTS denotes augmented
E1-ab-11 1867-1871 cui:C1511726 denotes data
E2-ab-11 1892-1899 cui:C0205263 denotes induced
E3-ab-11 1900-1908 cui:C0178539 denotes cellular
E4-ab-11 1927-1936 cui:C0205217 denotes increased
E5-ab-11 1937-1947 cui:C0185117 denotes expression
E6-ab-11 1951-1957 cui:C0078056 denotes VCAM-1
E7-ab-11 1961-1966 cui:C0020114 denotes HUVEC
E8-ab-11 1961-1966 cui:C0041637 denotes HUVEC
E9-ab-11 1961-1966 cui:C0225336 denotes HUVEC
E10-ab-11 1975-1985 cui:C0522506 denotes downstream
E11-ab-11 2000-2010 cui:C0752312 denotes MAP kinase
E12-ab-11 2015-2024 cui:C0079904 denotes NF-kappaB
E13-ab-11 2036-2051 cui:C0031715 denotes phosphorylation
E14-ab-11 2055-2062 cui:C0081939 denotes PECAM-1
E15-ab-11 2075-2081 cui:C1274040 denotes result
E16-ab-11 2099-2102 cui:C0033634 denotes PKC
T9 1937-1947 PART_OF denotes expression
T10 1986-1996 STIMULATES denotes activation
T11 1986-1996 STIMULATES denotes activation
E1-ab-12 2121-2124 cui:C1515877 denotes PAF
E2-ab-12 2121-2124 cui:C1521761 denotes PAF
E3-ab-12 2125-2133 cui:C0597357 denotes receptor
E4-ab-12 2121-2144 cui:C0032178 denotes PAF-receptor antagonist
E5-ab-12 2168-2175 cui:C0242184 denotes hypoxia
E6-ab-12 2176-2183 cui:C0205263 denotes induced
E7-ab-12 2184-2192 cui:C0442805 denotes increase
E8-ab-12 2200-2208 cui:C0001511 denotes adhesion
E9-ab-12 2212-2218 cui:C0014792 denotes SS RBC
E10-ab-12 2220-2227 cui:C0081939 denotes PECAM-1
E11-ab-12 2228-2243 cui:C0031715 denotes phosphorylation
E12-ab-12 2253-2264 cui:C1516780 denotes concomitant
E13-ab-12 2295-2304 cui:C0026473 denotes monocytes
T12 2209-2211 LOCATION_OF denotes of
R1 E7-ab-5 T1 subjectOf ERK2,substrate
R2 E9-ab-5 T1 objectOf upstream kinase,substrate
R3 E3-ab-7 T2 subjectOf VCAM-1,led
R4 E8-ab-7 T2 objectOf adhesion,led
R5 E7-ab-7 T3 subjectOf SS RBC,SS RBC adhesion
R6 E8-ab-7 T3 objectOf adhesion,SS RBC adhesion
R7 E8-ab-8 T4 subjectOf platelet endothelial cell adhesion molecules,increase
R8 E7-ab-8 T4 objectOf phosphorylation,increase
R9 E2-ab-9 T5 subjectOf antibody,inhibited
R10 E1-ab-9 T5 objectOf monocytes,inhibited
R11 E6-ab-10 T6 subjectOf GF109203X,phosphorylation
R12 E2-ab-10 T6 objectOf PECAM-1,phosphorylation
R13 E5-ab-10 T7 subjectOf protein kinase inhibitor,inhibited
R14 E3-ab-10 T7 objectOf monocytes,inhibited
R15 E7-ab-10 T8 subjectOf protein phosphatase inhibitor,augmented
R16 E1-ab-10 T8 objectOf phosphorylation,augmented
R17 E6-ab-11 T9 subjectOf VCAM-1,expression
R18 E9-ab-11 T9 objectOf HUVEC,expression
R19 E14-ab-11 T10 subjectOf PECAM-1,activation
R20 E11-ab-11 T10 objectOf MAP kinase,activation
R21 E14-ab-11 T11 subjectOf PECAM-1,activation
R22 E12-ab-11 T11 objectOf NF-kappaB,activation
R23 E9-ab-12 T12 subjectOf SS RBC,of
R24 E8-ab-12 T12 objectOf adhesion,of

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-208 Sentence denotes Cobalt chloride-induced signaling in endothelium leading to the augmented adherence of sickle red blood cells and transendothelial migration of monocyte-like HL-60 cells is blocked by PAF-receptor antagonist.
S2 209-403 Sentence denotes In response to hypoxia, sickle red blood cells (SS RBC) and leukocytes exhibit increased adherence to the vascular endothelium, while diapedesis of leukocytes through the blood vessel increases.
S3 404-486 Sentence denotes However, the cellular signaling pathway(s) caused by hypoxia is poorly understood.
S4 487-576 Sentence denotes We utilized CoCl2 as a mimetic molecule for hypoxia to study cellular signaling pathways.
S5 577-812 Sentence denotes We found that in human umbilical vein endothelial cells (HUVEC), CoCl2 at 2 mM concentration induced the surface expression of a subset of CAMs (VCAM-1) and activation of transcription factor NF-kappaB in the nuclear extracts of HUVEC.
S6 813-1060 Sentence denotes Furthermore, CoCl2 also caused time-dependent tyrosine phosphorylation of mitogen-activated protein (MAP) kinase isoform ERK2 without significantly affecting ERK1, indicating ERK2 is the preferred substrate for upstream kinase of the MAPK pathway.
S7 1061-1233 Sentence denotes Inhibitors of MAP kinase (PD98059) or platelet-activating factor (PAF)- receptor antagonist (CV3988) inhibited the CoCl2-induced NF-kappaB activation and VCAM-1 expression.
S8 1234-1332 Sentence denotes Augmented expression of VCAM-1 led to increased SS RBC adhesion, inhibitable by a VCAM-1 antibody.
S9 1333-1563 Sentence denotes Additionally, CoCl2 caused a two- to threefold increase in the rate of transendothelial migration of monocyte-like HL-60 cells and a twentyfold increase in phosphorylation of platelet endothelial cell adhesion molecules (PECAM-1).
S10 1564-1648 Sentence denotes The transendothelial migration of monocytes was inhibited by an antibody to PECAM-1.
S11 1649-1862 Sentence denotes Both phosphorylation of PECAM-1 and transendothelial migration of monocytes in response to CoCl2 were inhibited by protein kinase inhibitor (GF109203X) and augmented by protein phosphatase inhibitor (Calyculin A).
S12 1863-2103 Sentence denotes Our data suggests that CoCl2-induced cellular signals directing increased expression of VCAM-1 in HUVEC involve downstream activation of MAP kinase and NF-kappaB, while the phosphorylation of PECAM-1 occurs as a result of activation of PKC.
S13 2104-2305 Sentence denotes We conclude that PAF-receptor antagonist inhibits the CoCl2- or hypoxia-induced increase in the adhesion of SS RBC, PECAM-1 phosphorylation, and the concomitant transendothelial migration of monocytes.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-15 inorganic denotes Cobalt chloride
T2 37-48 tissue denotes endothelium
T3 87-93 cell_type denotes sickle
T4 94-109 cell_type denotes red blood cells
T5 144-169 cell_line denotes monocyte-like HL-60 cells
T6 184-207 other_organic_compound denotes PAF-receptor antagonist
T7 233-255 cell_type denotes sickle red blood cells
T8 257-263 cell_type denotes SS RBC
T9 269-279 cell_type denotes leukocytes
T10 357-367 cell_type denotes leukocytes
T11 380-392 body_part denotes blood vessel
T12 417-443 other_name denotes cellular signaling pathway
T13 457-464 other_name denotes hypoxia
T14 531-538 other_name denotes hypoxia
T15 548-575 other_name denotes cellular signaling pathways
T16 594-632 cell_type denotes human umbilical vein endothelial cells
T17 634-639 cell_type denotes HUVEC
T18 642-647 inorganic denotes CoCl2
T19 716-720 protein_family_or_group denotes CAMs
T20 722-728 protein_molecule denotes VCAM-1
T21 748-768 protein_family_or_group denotes transcription factor
T22 769-778 protein_complex denotes NF-kappaB
T23 786-802 cell_component denotes nuclear extracts
T24 806-811 cell_type denotes HUVEC
T25 826-831 inorganic denotes CoCl2
T26 859-867 amino_acid_monomer denotes tyrosine
T27 887-925 protein_family_or_group denotes mitogen-activated protein (MAP) kinase
T28 934-938 protein_molecule denotes ERK2
T29 971-975 protein_molecule denotes ERK1
T30 988-992 protein_molecule denotes ERK2
T31 1024-1039 protein_family_or_group denotes upstream kinase
T32 1047-1051 protein_family_or_group denotes MAPK
T33 1075-1085 protein_family_or_group denotes MAP kinase
T34 1087-1094 other_organic_compound denotes PD98059
T35 1099-1152 other_organic_compound denotes platelet-activating factor (PAF)- receptor antagonist
T36 1154-1160 other_organic_compound denotes CV3988
T37 1176-1181 inorganic denotes CoCl2
T38 1190-1199 protein_complex denotes NF-kappaB
T39 1215-1221 protein_molecule denotes VCAM-1
T40 1258-1264 protein_molecule denotes VCAM-1
T41 1282-1288 cell_type denotes SS RBC
T42 1316-1322 protein_molecule denotes VCAM-1
T43 1347-1352 inorganic denotes CoCl2
T44 1404-1430 other_name denotes transendothelial migration
T45 1434-1459 cell_line denotes monocyte-like HL-60 cells
T46 1508-1516 protein_family_or_group denotes platelet
T47 1517-1552 protein_family_or_group denotes endothelial cell adhesion molecules
T48 1554-1561 protein_molecule denotes PECAM-1
T49 1568-1594 other_name denotes transendothelial migration
T50 1598-1607 cell_type denotes monocytes
T51 1640-1647 protein_molecule denotes PECAM-1
T52 1673-1680 protein_molecule denotes PECAM-1
T53 1685-1711 other_name denotes transendothelial migration
T54 1715-1724 cell_type denotes monocytes
T55 1740-1745 inorganic denotes CoCl2
T56 1764-1788 other_organic_compound denotes protein kinase inhibitor
T57 1790-1799 other_organic_compound denotes GF109203X
T58 1818-1847 other_organic_compound denotes protein phosphatase inhibitor
T59 1849-1860 other_organic_compound denotes Calyculin A
T60 1886-1891 inorganic denotes CoCl2
T61 1951-1957 protein_molecule denotes VCAM-1
T62 1961-1966 cell_type denotes HUVEC
T63 2000-2010 protein_family_or_group denotes MAP kinase
T64 2015-2024 protein_complex denotes NF-kappaB
T65 2055-2062 protein_molecule denotes PECAM-1
T66 2099-2102 protein_molecule denotes PKC
T67 2121-2144 other_organic_compound denotes PAF-receptor antagonist
T68 2158-2163 inorganic denotes CoCl2
T69 2168-2175 other_name denotes hypoxia
T70 2212-2218 cell_type denotes SS RBC
T71 2220-2227 protein_molecule denotes PECAM-1
T72 2265-2291 other_name denotes transendothelial migration
T73 2295-2304 cell_type denotes monocytes

metamap-sample

Id Subject Object Predicate Lexical cue
T1 2266-2292 C2936223 denotes ransendothelial migration
T2 1569-1595 C2936223 denotes ransendothelial migration
T3 1405-1431 C2936223 denotes ransendothelial migration
T4 115-141 C2936223 denotes ransendothelial migration
T5 2296-2305 C0026473 denotes onocytes.
T6 1716-1725 C0026473 denotes onocytes
T7 1599-1608 C0026473 denotes onocytes
T8 1435-1443 C0026473 denotes onocyte-
T9 145-153 C0026473 denotes onocyte-
T10 1449-1460 C0282549 denotes L-60 cells
T11 159-170 C0282549 denotes L-60 cells
T12 2122-2134 C0071234 denotes AF-receptor
T13 185-197 C0071234 denotes AF-receptor
T14 25-34 C0037083 denotes ignaling
T15 1-16 C0056036 denotes obalt chloride-
T16 38-49 C0014257 denotes ndothelium
T17 2135-2145 C0231491 denotes ntagonist
T18 1143-1152 C0231491 denotes ntagonist
T19 198-208 C0231491 denotes ntagonist.
T20 2213-2219 C1277078 denotes S RBC,
T21 241-256 C1277078 denotes ed blood cells
T22 95-110 C1277078 denotes ed blood cells
T23 174-181 C0332206 denotes locked
T24 299-308 C1510802 denotes dherence
T25 75-84 C1510802 denotes dherence
T26 50-57 C1522538 denotes eading
T27 2177-2184 C0205263 denotes nduced
T28 1893-1900 C0205263 denotes nduced
T29 1183-1190 C0205263 denotes nduced
T30 671-678 C0205263 denotes nduced
T31 17-24 C0205263 denotes nduced
T32 1928-1936 C0205217 denotes ncreased
T33 1806-1815 C0205217 denotes ugmented
T34 1235-1244 C0205217 denotes ugmented
T35 289-298 C0205217 denotes ncreased
T36 65-73 C0205217 denotes ugmented
T37 2221-2228 C0081939 denotes ECAM-1
T38 2056-2063 C0081939 denotes ECAM-1
T39 1674-1681 C0081939 denotes ECAM-1
T40 1641-1648 C0081939 denotes ECAM-1.
T41 1509-1552 C0081939 denotes latelet endothelial cell adhesion molecules
T42 1952-1958 C0078056 denotes CAM-1
T43 1216-1222 C0078056 denotes CAM-1
T44 723-729 C0078056 denotes CAM-1)
T45 2001-2011 C0752312 denotes AP kinase
T46 2169-2176 C0242184 denotes ypoxia-
T47 532-539 C0242184 denotes ypoxia
T48 458-465 C0242184 denotes ypoxia
T49 225-232 C0242184 denotes ypoxia,
T50 2229-2244 C0031715 denotes hosphorylation,
T51 2037-2052 C0031715 denotes hosphorylation
T52 1655-1670 C0031715 denotes hosphorylation
T53 1490-1505 C0031715 denotes hosphorylation
T54 1962-1967 C3179121 denotes UVEC
T55 807-812 C3179121 denotes UVEC.
T56 2201-2209 C0001511 denotes dhesion
T57 1290-1298 C0001511 denotes dhesion,
T58 972-976 C0082529 denotes RK1,
T59 1354-1360 C0015127 denotes aused
T60 838-843 C0015127 denotes aused
T61 448-454 C0015127 denotes aused
T62 2108-2116 C0917903 denotes onclude
T63 558-576 C0086982 denotes ignaling pathways.
T64 427-444 C0086982 denotes ignaling pathway(
T65 344-354 C0277921 denotes iapedesis
T66 281-287 C0015272 denotes xhibit
T67 1324-1332 C0021027 denotes ntibody.
T68 717-721 C0007578 denotes AMs
T69 2185-2193 C0442805 denotes ncrease
T70 394-403 C0442805 denotes ncreases.
T71 1938-1948 C0185117 denotes xpression
T72 1245-1255 C0185117 denotes xpression
T73 1223-1233 C0185117 denotes xpression.
T74 691-701 C0185117 denotes xpression
T75 1155-1161 C0056625 denotes V3988)
T76 2016-2025 C0079904 denotes F-kappaB,
T77 476-486 C0162340 denotes nderstood.
T78 558-576 C0037080 denotes ignaling pathways.
T79 316-336 C0014261 denotes ascular endothelium,
T80 1901-1909 C0007634 denotes ellular
T81 549-557 C0007634 denotes ellular
T82 418-426 C0007634 denotes ellular
T83 1729-1737 C0871261 denotes esponse
T84 213-221 C0871261 denotes esponse
T85 2146-2154 C0018790 denotes nhibits
T86 927-934 C0597298 denotes soform
T87 1191-1211 C1523116 denotes F-kappaB activation
T88 1752-1761 C0311403 denotes nhibited
T89 1163-1172 C0311403 denotes nhibited
T90 381-393 C0005847 denotes lood vessel
T91 845-849 C0040223 denotes ime-
T92 962-971 C0392760 denotes ffecting
T93 469-475 C0205169 denotes oorly
T94 1868-1872 C1511726 denotes ata
T95 1791-1800 C0119104 denotes F109203X)
T96 1088-1095 C0298346 denotes D98059)
T97 581-586 C0150312 denotes ound
T98 1397-1401 C0871208 denotes ate
T99 543-548 C2603343 denotes tudy
T100 1363-1366 C0205448 denotes wo-
T101 1873-1881 C1705535 denotes uggests
T102 1918-1927 C0439851 denotes irecting
T103 787-803 C1518434 denotes uclear extracts
T104 1819-1848 C1514560 denotes rotein phosphatase inhibitor
T105 860-884 C1519726 denotes yrosine phosphorylation
T106 657-670 C1446561 denotes oncentration
T107 1910-1917 C1710082 denotes ignals
T108 1283-1289 C2699300 denotes S RBC
T109 1987-1997 C1879547 denotes ctivation
T110 2076-2082 C2825142 denotes esult
T111 2064-2070 C2745955 denotes ccurs
T112 1283-1289 C0332575 denotes S RBC
T113 683-690 C0205148 denotes urface
T114 1283-1289 C0229664 denotes S RBC
T115 1011-1020 C1710236 denotes ubstrate
T116 850-859 C0851827 denotes ependent
T117 519-526 C0567416 denotes olecule
T118 511-518 C0920591 denotes imetic
T119 2254-2265 C0521115 denotes oncomitant
T120 1976-1986 C0522506 denotes ownstream
T121 1650-1654 C1706086 denotes oth
T122 707-713 C1515021 denotes ubset
T123 1053-1060 C1704259 denotes athway.
T124 1001-1010 C0558295 denotes referred