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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 31-36 protein denotes STAT3
T2 40-56 protein denotes interferon-gamma
T3 60-77 cell_type denotes human neutrophils
T4 90-106 protein denotes interferon-gamma
T5 108-117 protein denotes IFN-gamma
T6 175-191 protein denotes tyrosine kinases
T7 192-196 protein denotes JAK1
T8 201-205 protein denotes JAK2
T9 246-256 protein denotes STAT1alpha
T10 282-292 protein denotes STAT1alpha
T11 300-318 protein denotes IFN-gamma receptor
T12 365-389 protein denotes cytosolic tyrosine motif
T13 400-404 protein denotes Y440
T14 412-442 protein denotes IFN-gamma receptor alpha-chain
T15 451-461 protein denotes SH2 domain
T16 465-475 protein denotes STAT1alpha
T17 513-523 protein denotes STAT1alpha
T18 525-530 protein denotes STAT3
T19 552-561 protein denotes IFN-gamma
T20 565-582 cell_type denotes human neutrophils
T21 602-607 protein denotes STAT3
T22 625-642 cell_type denotes human eosinophils
T23 644-653 cell_type denotes monocytes
T24 659-670 cell_line denotes HL-60 cells
T25 685-698 protein denotes STAT3 protein
T26 766-771 protein denotes STAT3
T27 775-784 protein denotes IFN-gamma
T28 806-817 cell_type denotes neutrophils
T29 856-892 cell_type denotes human CD34+ hematopoietic stem cells
T30 931-948 protein denotes cytokine receptor
T31 972-991 protein denotes STAT family members

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 31-36 NP denotes STAT3
C2 40-56 NP denotes interferon-gamma
C3 60-77 NP denotes human neutrophils
C4 90-118 NP denotes interferon-gamma (IFN-gamma)
C5 122-125 NP denotes its
C6 246-256 NP denotes STAT1alpha
C7 282-292 NP denotes STAT1alpha
C8 465-475 NP denotes STAT1alpha
C9 513-523 NP denotes STAT1alpha
C10 525-530 NP denotes STAT3
C11 552-561 NP denotes IFN-gamma
C12 565-582 NP denotes human neutrophils
C13 602-607 NP denotes STAT3
C14 625-670 NP denotes human eosinophils, monocytes, and HL-60 cells
C15 716-727 NP denotes these cells
C16 766-771 NP denotes STAT3
C17 775-784 NP denotes IFN-gamma
C18 806-817 NP denotes neutrophils
C19 818-822 NP denotes that
R1 C4 C2 coref-ident interferon-gamma (IFN-gamma),interferon-gamma
R2 C5 C4 coref-pron its,interferon-gamma (IFN-gamma)
R3 C7 C6 coref-ident STAT1alpha,STAT1alpha
R4 C8 C7 coref-ident STAT1alpha,STAT1alpha
R5 C9 C8 coref-ident STAT1alpha,STAT1alpha
R6 C10 C1 coref-ident STAT3,STAT3
R7 C11 C4 coref-ident IFN-gamma,interferon-gamma (IFN-gamma)
R8 C12 C3 coref-ident human neutrophils,human neutrophils
R9 C13 C10 coref-ident STAT3,STAT3
R10 C15 C14 coref-ident these cells,"human eosinophils, monocytes, and HL-60 cells"
R11 C16 C13 coref-ident STAT3,STAT3
R12 C17 C11 coref-ident IFN-gamma,IFN-gamma
R13 C19 C18 coref-relat that,neutrophils

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-78 Sentence denotes Lineage-specific activation of STAT3 by interferon-gamma in human neutrophils.
S2 79-257 Sentence denotes Binding of interferon-gamma (IFN-gamma) to its heterodimeric receptor induces activation of the tyrosine kinases JAK1 and JAK2 followed by tyrosine phosphorylation of STAT1alpha.
S3 258-476 Sentence denotes Selective activation of STAT1alpha at the IFN-gamma receptor is achieved by specific interaction between a cytosolic tyrosine motif including Y440 in the IFN-gamma receptor alpha-chain and the SH2 domain of STAT1alpha.
S4 477-583 Sentence denotes We demonstrate that, in addition to STAT1alpha, STAT3 is also activated by IFN-gamma in human neutrophils.
S5 584-728 Sentence denotes The activation of STAT3 was not found in human eosinophils, monocytes, and HL-60 cells, although the STAT3 protein was expressed in these cells.
S6 729-893 Sentence denotes The cell type-specific activation of STAT3 by IFN-gamma was also observed in neutrophils that are differentiated in vitro from human CD34+ hematopoietic stem cells.
S7 894-1074 Sentence denotes These results indicate that a single cytokine receptor can activate different STAT family members in a cell-specific manner, which might result in cell-specific gene transcription.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 31-36 protein_molecule denotes STAT3
T2 40-56 protein_molecule denotes interferon-gamma
T3 60-77 cell_type denotes human neutrophils
T4 90-106 protein_molecule denotes interferon-gamma
T5 108-117 protein_molecule denotes IFN-gamma
T6 175-183 amino_acid_monomer denotes tyrosine
T7 192-196 protein_molecule denotes JAK1
T8 201-205 protein_molecule denotes JAK2
T9 218-226 amino_acid_monomer denotes tyrosine
T10 246-256 protein_molecule denotes STAT1alpha
T11 282-292 protein_molecule denotes STAT1alpha
T12 300-309 protein_molecule denotes IFN-gamma
T13 375-383 amino_acid_monomer denotes tyrosine
T14 400-404 protein_domain_or_region denotes Y440
T15 412-421 protein_molecule denotes IFN-gamma
T16 451-461 protein_domain_or_region denotes SH2 domain
T17 465-475 protein_molecule denotes STAT1alpha
T18 513-523 protein_molecule denotes STAT1alpha
T19 525-530 protein_molecule denotes STAT3
T20 552-561 protein_molecule denotes IFN-gamma
T21 565-582 cell_type denotes human neutrophils
T22 602-607 protein_molecule denotes STAT3
T23 625-642 cell_type denotes human eosinophils
T24 644-653 cell_type denotes monocytes
T25 659-670 cell_line denotes HL-60 cells
T26 685-690 protein_molecule denotes STAT3
T27 733-762 other_name denotes cell type-specific activation
T28 766-771 protein_molecule denotes STAT3
T29 775-784 protein_molecule denotes IFN-gamma
T30 806-817 cell_type denotes neutrophils
T31 856-892 cell_type denotes human CD34+ hematopoietic stem cells
T32 931-948 protein_family_or_group denotes cytokine receptor
T33 972-991 protein_family_or_group denotes STAT family members
T34 997-1017 other_name denotes cell-specific manner
T35 1041-1073 other_name denotes cell-specific gene transcription