PubMed:10072068
Annnotations
jnlpba-st-training
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-5 | DNA | denotes | RFX-B |
| T2 | 92-104 | protein | denotes | MHC class II |
| T3 | 193-205 | protein | denotes | MHC class II |
| T4 | 382-415 | protein | denotes | MHC class II transcription factor |
| T5 | 416-419 | protein | denotes | RFX |
| T6 | 442-453 | protein | denotes | RFX complex |
| T7 | 556-561 | DNA | denotes | RFX-B |
| T8 | 563-568 | DNA | denotes | RFX-B |
| T9 | 597-622 | protein | denotes | BLS complementation group |
| T10 | 624-631 | protein | denotes | group B |
| T11 | 663-673 | cell_line | denotes | cell lines |
| T12 | 720-738 | protein | denotes | DNA-binding domain |
DisGeNET5_gene_disease
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 10072068-0#0#5#gene8625 | 0-5 | gene8625 | denotes | RFX-B |
| 10072068-0#63#87#diseaseC0242583 | 63-87 | diseaseC0242583 | denotes | bare lymphocyte syndrome |
| 10072068-0#63#87#diseaseC2931418 | 63-87 | diseaseC2931418 | denotes | bare lymphocyte syndrome |
| 10072068-1#70#73#gene3107 | 193-196 | gene3107 | denotes | MHC |
| 10072068-1#4#28#diseaseC2931418 | 127-151 | diseaseC2931418 | denotes | bare lymphocyte syndrome |
| 10072068-1#30#33#diseaseC2931418 | 153-156 | diseaseC2931418 | denotes | BLS |
| 0#5#gene862563#87#diseaseC0242583 | 10072068-0#0#5#gene8625 | 10072068-0#63#87#diseaseC0242583 | associated_with | RFX-B,bare lymphocyte syndrome |
| 0#5#gene862563#87#diseaseC2931418 | 10072068-0#0#5#gene8625 | 10072068-0#63#87#diseaseC2931418 | associated_with | RFX-B,bare lymphocyte syndrome |
| 70#73#gene31074#28#diseaseC2931418 | 10072068-1#70#73#gene3107 | 10072068-1#4#28#diseaseC2931418 | associated_with | MHC,bare lymphocyte syndrome |
| 70#73#gene310730#33#diseaseC2931418 | 10072068-1#70#73#gene3107 | 10072068-1#30#33#diseaseC2931418 | associated_with | MHC,BLS |
genia-medco-coref
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| C1 | 0-5 | NP | denotes | RFX-B |
| C2 | 59-87 | NP | denotes | the bare lymphocyte syndrome |
| C3 | 89-121 | NP | denotes | an MHC class II immunodeficiency |
| C4 | 123-157 | NP | denotes | The bare lymphocyte syndrome (BLS) |
| C5 | 438-453 | NP | denotes | the RFX complex |
| C6 | 468-471 | NP | denotes | its |
| C7 | 535-547 | NP | denotes | a novel gene |
| C8 | 556-561 | NP | denotes | RFX-B |
| C9 | 563-568 | NP | denotes | RFX-B |
| C10 | 581-632 | NP | denotes | the predominant BLS complementation group (group B) |
| C11 | 679-693 | NP | denotes | this BLS group |
| C12 | 756-777 | NP | denotes | three ankyrin repeats |
| C13 | 778-782 | NP | denotes | that |
| R1 | C3 | C2 | coref-appos | an MHC class II immunodeficiency,the bare lymphocyte syndrome |
| R2 | C4 | C2 | coref-ident | The bare lymphocyte syndrome (BLS),the bare lymphocyte syndrome |
| R3 | C6 | C5 | coref-pron | its,the RFX complex |
| R4 | C7 | C1 | coref-ident | a novel gene,RFX-B |
| R5 | C8 | C7 | coref-ident | RFX-B,a novel gene |
| R6 | C9 | C8 | coref-ident | RFX-B,RFX-B |
| R7 | C11 | C10 | coref-ident | this BLS group,the predominant BLS complementation group (group B) |
| R8 | C13 | C12 | coref-relat | that,three ankyrin repeats |
pubmed-sentences-benchmark
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| S1 | 0-122 | Sentence | denotes | RFX-B is the gene responsible for the most common cause of the bare lymphocyte syndrome, an MHC class II immunodeficiency. |
| S2 | 123-292 | Sentence | denotes | The bare lymphocyte syndrome (BLS) is characterized by the absence of MHC class II transcription and humoral- and cellular-mediated immune responses to foreign antigens. |
| S3 | 293-420 | Sentence | denotes | Three of the four BLS genetic complementation groups have defects in the activity of the MHC class II transcription factor RFX. |
| S4 | 421-487 | Sentence | denotes | We have purified the RFX complex and sequenced its three subunits. |
| S5 | 488-562 | Sentence | denotes | The sequence of the smallest subunit describes a novel gene, termed RFX-B. |
| S6 | 563-694 | Sentence | denotes | RFX-B complements the predominant BLS complementation group (group B) and was found to be mutant in cell lines from this BLS group. |
| S7 | 695-842 | Sentence | denotes | The protein has no known DNA-binding domain but does contain three ankyrin repeats that are likely to be important in protein-protein interactions. |
GENIAcorpus
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-5 | DNA_domain_or_region | denotes | RFX-B |
| T2 | 63-87 | other_name | denotes | bare lymphocyte syndrome |
| T3 | 92-104 | protein_family_or_group | denotes | MHC class II |
| T4 | 127-151 | other_name | denotes | bare lymphocyte syndrome |
| T5 | 153-156 | other_name | denotes | BLS |
| T6 | 193-205 | protein_family_or_group | denotes | MHC class II |
| T7 | 311-314 | other_name | denotes | BLS |
| T8 | 382-415 | protein_family_or_group | denotes | MHC class II transcription factor |
| T9 | 416-419 | protein_molecule | denotes | RFX |
| T10 | 442-445 | protein_molecule | denotes | RFX |
| T11 | 556-561 | DNA_domain_or_region | denotes | RFX-B |
| T12 | 563-568 | DNA_domain_or_region | denotes | RFX-B |
| T13 | 597-600 | other_name | denotes | BLS |
| T14 | 624-631 | protein_family_or_group | denotes | group B |
| T15 | 663-673 | cell_line | denotes | cell lines |
| T16 | 684-687 | other_name | denotes | BLS |
| T17 | 720-738 | protein_domain_or_region | denotes | DNA-binding domain |
| T18 | 813-841 | other_name | denotes | protein-protein interactions |
DisGeNET
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T0 | 563-568 | gene:8625 | denotes | RFX-B |
| T1 | 597-600 | disease:C0242583 | denotes | BLS |
| T2 | 563-568 | gene:8625 | denotes | RFX-B |
| T3 | 597-600 | disease:C2931418 | denotes | BLS |
| T4 | 563-568 | gene:8625 | denotes | RFX-B |
| T5 | 684-687 | disease:C0242583 | denotes | BLS |
| T6 | 563-568 | gene:8625 | denotes | RFX-B |
| T7 | 684-687 | disease:C2931418 | denotes | BLS |
| R1 | T0 | T1 | associated_with | RFX-B,BLS |
| R2 | T2 | T3 | associated_with | RFX-B,BLS |
| R3 | T4 | T5 | associated_with | RFX-B,BLS |
| R4 | T6 | T7 | associated_with | RFX-B,BLS |