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PubMed:10071212 JSONTXT

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Oryza-OGER

Id Subject Object Predicate Lexical cue
T1 4-7 http://purl.obolibrary.org/obo/SO_0000286 denotes LTR
T2 8-24 http://id.nlm.nih.gov/mesh/D018626 denotes retrotransposons
T3 61-66 http://id.nlm.nih.gov/mesh/D010944 denotes plant
T4 123-127 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T5 123-127 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T6 123-127 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T7 128-132 http://purl.obolibrary.org/obo/SO_0000704 denotes gene
T8 138-143 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza
T9 138-157 http://www.ncbi.nlm.nih.gov/taxonomy/4532 denotes Oryza australiensis
T10 161-164 http://www.uniprot.org/uniprot/Q41249 denotes PCR
T11 161-164 http://www.uniprot.org/uniprot/Q9SDT1 denotes PCR
T12 161-164 http://www.uniprot.org/uniprot/P15904 denotes PCR
T13 161-164 http://www.uniprot.org/uniprot/Q01289 denotes PCR
T14 161-164 http://www.uniprot.org/uniprot/Q59987 denotes PCR
T15 161-164 http://www.uniprot.org/uniprot/Q39617 denotes PCR
T16 161-164 http://www.uniprot.org/uniprot/O66148 denotes PCR
T17 161-164 http://www.uniprot.org/uniprot/O80333 denotes PCR
T18 170-185 http://purl.obolibrary.org/obo/SO_0000696 denotes oligonucleotide
T19 170-185 http://purl.obolibrary.org/obo/CHEBI_7754 denotes oligonucleotide
T20 170-193 http://id.nlm.nih.gov/mesh/D017931 denotes oligonucleotide primers
T21 170-193 http://id.nlm.nih.gov/mesh/D017931 denotes oligonucleotide primers
T22 224-232 http://purl.obolibrary.org/obo/SO_0000731 denotes fragment
T23 245-253 http://purl.obolibrary.org/obo/SO_0000001 denotes sequence
T24 270-282 http://www.uniprot.org/uniprot/P38446 denotes endonuclease
T25 270-282 http://www.uniprot.org/uniprot/P20314 denotes endonuclease
T26 270-282 http://www.uniprot.org/uniprot/P13717 denotes endonuclease
T27 288-294 http://purl.obolibrary.org/obo/SO_0000839 denotes region
T28 288-294 http://purl.obolibrary.org/obo/SO_0000001 denotes region
T29 302-307 http://www.ncbi.nlm.nih.gov/taxonomy/4577 denotes maize
T30 302-307 http://id.nlm.nih.gov/mesh/D003313 denotes maize
T31 308-331 http://purl.obolibrary.org/obo/SO_0000189 denotes non-LTR retrotransposon
T32 312-315 http://purl.obolibrary.org/obo/SO_0000286 denotes LTR
T33 312-331 http://purl.obolibrary.org/obo/SO_0000186 denotes LTR retrotransposon
T34 316-331 KARMA denotes retrotransposon
T35 316-331 http://id.nlm.nih.gov/mesh/D018626 denotes retrotransposon
T36 316-331 http://purl.obolibrary.org/obo/SO_0000180 denotes retrotransposon
T37 333-337 http://purl.obolibrary.org/obo/SO_0000194 denotes LINE
T38 339-342 http://purl.obolibrary.org/obo/PR_P39205 denotes Cin
T39 339-342 http://purl.obolibrary.org/obo/PR_P60487 denotes Cin
T40 339-342 http://purl.obolibrary.org/obo/PR_Q8VD52 denotes Cin
T41 339-343 http://purl.obolibrary.org/obo/PR_P39110 denotes Cin4
T42 339-343 http://purl.obolibrary.org/obo/PR_G5ECQ8 denotes Cin4
T43 356-359 http://purl.obolibrary.org/obo/PR_000016181 denotes out
T44 356-359 http://purl.obolibrary.org/obo/PR_Q9JLR5 denotes out
T45 379-394 http://purl.obolibrary.org/obo/SO_0000696 denotes oligonucleotide
T46 379-394 http://purl.obolibrary.org/obo/CHEBI_7754 denotes oligonucleotide
T47 379-402 http://id.nlm.nih.gov/mesh/D017931 denotes oligonucleotide primers
T48 379-402 http://id.nlm.nih.gov/mesh/D017931 denotes oligonucleotide primers
T49 439-442 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T50 439-442 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T51 531-536 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza
T52 531-543 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes Oryza sativa
T53 531-543 http://id.nlm.nih.gov/mesh/D012275 denotes Oryza sativa
T54 567-571 http://purl.obolibrary.org/obo/CHEBI_30275 denotes as O
T55 567-571 http://purl.obolibrary.org/obo/CHEBI_30276 denotes as O
T56 567-571 http://purl.obolibrary.org/obo/CHEBI_30274 denotes as O
T57 631-635 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T58 631-635 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T59 631-635 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T60 636-640 http://purl.obolibrary.org/obo/SO_0000194 denotes LINE
T61 677-680 http://web.expasy.org/cellosaurus/CVCL_2244 denotes YAC
T62 677-680 http://purl.obolibrary.org/obo/SO_0000152 denotes YAC
T63 701-705 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T64 701-705 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T65 701-705 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T66 718-724 http://purl.obolibrary.org/obo/SO_0001026 denotes genome
T67 726-729 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T68 726-729 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T69 746-755 http://purl.obolibrary.org/obo/SO_0000853 denotes homologue
T70 756-759 http://purl.obolibrary.org/obo/PR_000017371 denotes was
T71 756-759 http://purl.obolibrary.org/obo/PR_P42768 denotes was
T72 756-759 http://purl.obolibrary.org/obo/PR_P70315 denotes was
T73 756-759 http://id.nlm.nih.gov/mesh/D014923 denotes was
T74 826-830 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T75 826-830 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T76 826-830 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T77 860-863 http://purl.obolibrary.org/obo/PR_000016181 denotes out
T78 860-863 http://purl.obolibrary.org/obo/PR_Q9JLR5 denotes out
T79 864-867 http://www.uniprot.org/uniprot/Q41249 denotes PCR
T80 864-867 http://www.uniprot.org/uniprot/Q9SDT1 denotes PCR
T81 864-867 http://www.uniprot.org/uniprot/P15904 denotes PCR
T82 864-867 http://www.uniprot.org/uniprot/Q01289 denotes PCR
T83 864-867 http://www.uniprot.org/uniprot/Q59987 denotes PCR
T84 864-867 http://www.uniprot.org/uniprot/Q39617 denotes PCR
T85 864-867 http://www.uniprot.org/uniprot/O66148 denotes PCR
T86 864-867 http://www.uniprot.org/uniprot/O80333 denotes PCR
T87 885-900 http://purl.obolibrary.org/obo/SO_0000696 denotes oligonucleotide
T88 885-900 http://purl.obolibrary.org/obo/CHEBI_7754 denotes oligonucleotide
T89 885-908 http://id.nlm.nih.gov/mesh/D017931 denotes oligonucleotide primers
T90 885-908 http://id.nlm.nih.gov/mesh/D017931 denotes oligonucleotide primers
T91 933-937 http://id.nlm.nih.gov/mesh/D012275 denotes rice
T92 933-937 http://purl.bioontology.org/ontology/RXNORM/1311040 denotes rice
T93 933-937 http://www.ncbi.nlm.nih.gov/taxonomy/4530 denotes rice
T94 938-942 http://purl.obolibrary.org/obo/SO_0000194 denotes LINE
T95 954-957 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T96 954-957 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T97 958-961 http://purl.obolibrary.org/obo/PR_P39205 denotes Cin
T98 958-961 http://purl.obolibrary.org/obo/PR_P60487 denotes Cin
T99 958-961 http://purl.obolibrary.org/obo/PR_Q8VD52 denotes Cin
T100 958-962 http://purl.obolibrary.org/obo/PR_P39110 denotes Cin4
T101 958-962 http://purl.obolibrary.org/obo/PR_G5ECQ8 denotes Cin4
T102 984-988 http://purl.obolibrary.org/obo/SO_0000194 denotes LINE
T103 1000-1003 http://purl.obolibrary.org/obo/SO_0001180 denotes are
T104 1000-1003 http://purl.obolibrary.org/obo/SO_0001853 denotes are
T105 1043-1048 http://id.nlm.nih.gov/mesh/D010944 denotes plant
T106 1068-1079 http://id.nlm.nih.gov/mesh/D019684 denotes angiosperms
T107 1081-1092 http://id.nlm.nih.gov/mesh/D032462 denotes gymnosperms
T108 1094-1101 http://www.ncbi.nlm.nih.gov/taxonomy/32101 denotes bracken
T109 1103-1112 http://id.nlm.nih.gov/mesh/D020829 denotes horsetail
T110 1113-1116 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T111 1113-1116 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T112 1117-1126 http://id.nlm.nih.gov/mesh/D035926 denotes liverwort
T113 1117-1126 http://www.ncbi.nlm.nih.gov/taxonomy/3197 denotes liverwort
T114 1136-1139 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T115 1136-1139 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T116 1140-1150 http://purl.obolibrary.org/obo/CHEBI_36976 denotes nucleotide
T117 1203-1206 http://purl.obolibrary.org/obo/PR_000016181 denotes out
T118 1203-1206 http://purl.obolibrary.org/obo/PR_Q9JLR5 denotes out
T119 1213-1218 http://id.nlm.nih.gov/mesh/D010944 denotes plant
T120 1237-1241 http://purl.obolibrary.org/obo/SO_0000194 denotes LINE
T121 1340-1351 http://id.nlm.nih.gov/mesh/D017360 denotes Arabidopsis
T122 1340-1360 http://www.ncbi.nlm.nih.gov/taxonomy/3702 denotes Arabidopsis thaliana
T123 1340-1360 http://id.nlm.nih.gov/mesh/D017360 denotes Arabidopsis thaliana
T124 1361-1367 http://purl.obolibrary.org/obo/SO_0001026 denotes genome
T125 1407-1417 http://purl.obolibrary.org/obo/CHEBI_36976 denotes nucleotide
T126 1438-1441 http://purl.obolibrary.org/obo/UBERON_0014899 denotes all
T127 1438-1441 http://id.nlm.nih.gov/mesh/D054198 denotes all
T128 1438-1441 http://purl.obolibrary.org/obo/CHEBI_37690 denotes all
T129 1446-1450 http://purl.obolibrary.org/obo/SO_0000194 denotes LINE
T130 1501-1506 http://purl.obolibrary.org/obo/CHEBI_46882 denotes amino
T131 1501-1511 http://purl.obolibrary.org/obo/SO_0001237 denotes amino acid
T132 1501-1511 http://purl.obolibrary.org/obo/CHEBI_33709 denotes amino acid
T133 1501-1511 http://purl.obolibrary.org/obo/CHEBI_33704 denotes amino acid
T134 1507-1511 http://purl.obolibrary.org/obo/CHEBI_37527 denotes acid
T135 1532-1541 http://purl.obolibrary.org/obo/SO_0000856 denotes conserved
T136 1543-1546 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T137 1543-1546 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T138 1547-1550 http://purl.obolibrary.org/obo/UBERON_0014899 denotes all
T139 1547-1550 http://id.nlm.nih.gov/mesh/D054198 denotes all
T140 1547-1550 http://purl.obolibrary.org/obo/CHEBI_37690 denotes all
T141 1561-1574 http://purl.obolibrary.org/obo/CHEBI_18237 denotes glutamic acid
T142 1561-1574 http://purl.obolibrary.org/obo/SO_0001454 denotes glutamic acid
T143 1561-1574 http://purl.bioontology.org/ontology/RXNORM/25916 denotes glutamic acid
T144 1561-1574 http://id.nlm.nih.gov/mesh/D018698 denotes glutamic acid
T145 1561-1574 http://id.nlm.nih.gov/mesh/D018698 denotes glutamic acid
T146 1561-1574 http://purl.obolibrary.org/obo/CHEBI_16015 denotes glutamic acid
T147 1570-1574 http://purl.obolibrary.org/obo/CHEBI_37527 denotes acid
T148 1575-1578 http://purl.obolibrary.org/obo/PR_P49258 denotes and
T149 1575-1578 http://www.ncbi.nlm.nih.gov/taxonomy/1481724 denotes and
T150 1579-1587 http://id.nlm.nih.gov/mesh/D014443 denotes tyrosine
T151 1579-1587 http://purl.obolibrary.org/obo/CHEBI_18186 denotes tyrosine
T152 1579-1587 http://purl.bioontology.org/ontology/RXNORM/10962 denotes tyrosine
T153 1579-1587 http://purl.obolibrary.org/obo/CHEBI_17895 denotes tyrosine
T154 1579-1587 http://purl.obolibrary.org/obo/SO_0001446 denotes tyrosine
T155 1579-1587 http://id.nlm.nih.gov/mesh/D014443 denotes tyrosine
T156 1579-1587 http://purl.obolibrary.org/obo/CHEBI_32783 denotes tyrosine
T157 1611-1615 http://purl.obolibrary.org/obo/CHEBI_15414 denotes same
T158 1656-1660 http://purl.obolibrary.org/obo/SO_0000409 denotes site
T159 1656-1660 http://purl.obolibrary.org/obo/SO_0000839 denotes site
T160 1656-1660 http://purl.obolibrary.org/obo/SO_0000408 denotes site
T161 1699-1712 http://id.nlm.nih.gov/mesh/D004720 denotes endonucleases
T162 1736-1740 http://purl.obolibrary.org/obo/SO_0000194 denotes LINE
T163 1773-1778 http://id.nlm.nih.gov/mesh/D010944 denotes plant
T164 1844-1852 http://purl.obolibrary.org/obo/SO_0000001 denotes sequence
T165 1893-1896 http://www.uniprot.org/uniprot/Q7CZN9 denotes has
T166 1893-1896 http://www.uniprot.org/uniprot/B9JD11 denotes has
T167 1893-1896 http://purl.obolibrary.org/obo/PR_Q92839 denotes has
T168 1893-1896 http://www.uniprot.org/uniprot/B2S532 denotes has
T169 1893-1896 http://www.uniprot.org/uniprot/B7HMD0 denotes has
T170 1893-1896 http://www.uniprot.org/uniprot/Q2K9W9 denotes has
T171 1893-1896 http://www.uniprot.org/uniprot/A4ILW9 denotes has
T172 1893-1896 http://www.uniprot.org/uniprot/C0RIC2 denotes has
T173 1893-1896 http://www.uniprot.org/uniprot/A0AKG4 denotes has
T174 1893-1896 http://www.uniprot.org/uniprot/A5EKD5 denotes has
T175 1893-1896 http://www.uniprot.org/uniprot/Q2GCS4 denotes has
T176 1893-1896 http://www.uniprot.org/uniprot/C1EPW0 denotes has
T177 1893-1896 http://www.uniprot.org/uniprot/Q0AIG6 denotes has
T178 1893-1896 http://www.uniprot.org/uniprot/Q8ER78 denotes has
T179 1893-1896 http://www.uniprot.org/uniprot/B9DPV8 denotes has
T180 1893-1896 http://www.uniprot.org/uniprot/B7IVI3 denotes has
T181 1893-1896 http://www.uniprot.org/uniprot/A0RHW4 denotes has
T182 1893-1896 http://www.uniprot.org/uniprot/C3MA28 denotes has
T183 1893-1896 http://www.uniprot.org/uniprot/Q73HV8 denotes has
T184 1893-1896 http://www.uniprot.org/uniprot/Q5FG54 denotes has
T185 1893-1896 http://www.uniprot.org/uniprot/A7X127 denotes has
T186 1893-1896 http://www.uniprot.org/uniprot/A1USH8 denotes has
T187 1893-1896 http://www.uniprot.org/uniprot/Q635Y0 denotes has
T188 1893-1896 http://www.uniprot.org/uniprot/B1M282 denotes has
T189 1893-1896 http://www.uniprot.org/uniprot/Q165T0 denotes has
T190 1893-1896 http://www.uniprot.org/uniprot/B6IUZ7 denotes has
T191 1893-1896 http://www.uniprot.org/uniprot/A6X1W1 denotes has
T192 1893-1896 http://www.uniprot.org/uniprot/P94346 denotes has
T193 1893-1896 http://www.uniprot.org/uniprot/A9MAG4 denotes has
T194 1893-1896 http://www.uniprot.org/uniprot/C4L5D6 denotes has
T195 1893-1896 http://web.expasy.org/cellosaurus/CVCL_E689 denotes has
T196 1893-1896 http://www.uniprot.org/uniprot/Q1RJX8 denotes has
T197 1893-1896 http://www.uniprot.org/uniprot/A5VF68 denotes has
T198 1893-1896 http://www.uniprot.org/uniprot/B9EB26 denotes has
T199 1893-1896 http://www.uniprot.org/uniprot/B7JK34 denotes has
T200 1893-1896 http://www.uniprot.org/uniprot/A1B8C2 denotes has
T201 1893-1896 http://www.uniprot.org/uniprot/Q5PBP7 denotes has
T202 1893-1896 http://www.uniprot.org/uniprot/Q1GGZ8 denotes has
T203 1893-1896 http://www.uniprot.org/uniprot/Q71XV6 denotes has
T204 1893-1896 http://www.uniprot.org/uniprot/P12946 denotes has
T205 1893-1896 http://www.uniprot.org/uniprot/B9IW25 denotes has
T206 1893-1896 http://www.uniprot.org/uniprot/Q4FLV1 denotes has
T207 1893-1896 http://www.uniprot.org/uniprot/Q6HEL8 denotes has
T208 1893-1896 http://www.uniprot.org/uniprot/C3LI12 denotes has
T209 1893-1896 http://www.uniprot.org/uniprot/A5IS02 denotes has
T210 1893-1896 http://www.uniprot.org/uniprot/Q82X64 denotes has
T211 1893-1896 http://www.uniprot.org/uniprot/Q67L43 denotes has
T212 1893-1896 http://www.uniprot.org/uniprot/A5FA69 denotes has
T213 1893-1896 http://www.uniprot.org/uniprot/Q9ZDR8 denotes has
T214 1893-1896 http://www.uniprot.org/uniprot/Q6N660 denotes has
T215 1893-1896 http://www.uniprot.org/uniprot/A5VPX0 denotes has
T216 1893-1896 http://www.uniprot.org/uniprot/B0BWT1 denotes has
T217 1893-1896 http://www.uniprot.org/uniprot/Q07MP8 denotes has
T218 1893-1896 http://www.uniprot.org/uniprot/Q11J69 denotes has
T219 1893-1896 http://www.uniprot.org/uniprot/A8F119 denotes has
T220 1893-1896 http://www.uniprot.org/uniprot/Q6GHX0 denotes has
T221 1893-1896 http://www.uniprot.org/uniprot/Q1GWK6 denotes has
T222 1893-1896 http://www.uniprot.org/uniprot/A7HXA1 denotes has
T223 1893-1896 http://www.uniprot.org/uniprot/Q5LRS1 denotes has
T224 1893-1896 http://www.uniprot.org/uniprot/A7Z4B0 denotes has
T225 1893-1896 http://www.uniprot.org/uniprot/Q3SSR2 denotes has
T226 1893-1896 http://www.uniprot.org/uniprot/Q6G3L5 denotes has
T227 1893-1896 http://www.uniprot.org/uniprot/Q8YGI7 denotes has
T228 1893-1896 http://www.uniprot.org/uniprot/B9KHM9 denotes has
T229 1893-1896 http://www.uniprot.org/uniprot/Q2Y9R4 denotes has
T230 1893-1896 http://www.uniprot.org/uniprot/B0T0S6 denotes has
T231 1893-1896 http://www.uniprot.org/uniprot/Q6G011 denotes has
T232 1893-1896 http://www.uniprot.org/uniprot/B2IH44 denotes has
T233 1893-1896 http://www.uniprot.org/uniprot/A6U0T3 denotes has
T234 1893-1896 http://www.uniprot.org/uniprot/Q2YNB0 denotes has
T235 1893-1896 http://www.uniprot.org/uniprot/B7H6T3 denotes has
T236 1893-1896 http://www.uniprot.org/uniprot/B1HPV0 denotes has
T237 1893-1896 http://www.uniprot.org/uniprot/Q819N0 denotes has
T238 1893-1896 http://www.uniprot.org/uniprot/Q92QR8 denotes has
T239 1893-1896 http://web.expasy.org/cellosaurus/CVCL_6758 denotes has
T240 1893-1896 http://www.uniprot.org/uniprot/A7GRX4 denotes has
T241 1893-1896 http://purl.obolibrary.org/obo/PR_000008449 denotes has
T242 1893-1896 http://www.uniprot.org/uniprot/B0CLB4 denotes has
T243 1893-1896 http://www.uniprot.org/uniprot/A7ING5 denotes has
T244 1893-1896 http://www.uniprot.org/uniprot/Q5WFD1 denotes has
T245 1893-1896 http://www.uniprot.org/uniprot/Q89KD9 denotes has
T246 1893-1896 http://www.uniprot.org/uniprot/B1ZGD8 denotes has
T247 1893-1896 http://www.uniprot.org/uniprot/A8EY08 denotes has
T248 1893-1896 http://www.uniprot.org/uniprot/Q04443 denotes has
T249 1893-1896 http://www.uniprot.org/uniprot/Q0APH6 denotes has
T250 1893-1896 http://www.uniprot.org/uniprot/A8LK55 denotes has
T251 1893-1896 http://www.uniprot.org/uniprot/B1YIW6 denotes has
T252 1893-1896 http://www.uniprot.org/uniprot/Q92IS7 denotes has
T253 1893-1896 http://www.uniprot.org/uniprot/Q81MT7 denotes has
T254 1893-1896 http://www.uniprot.org/uniprot/Q2FHW5 denotes has
T255 1893-1896 http://www.uniprot.org/uniprot/B8DH71 denotes has
T256 1893-1896 http://www.uniprot.org/uniprot/Q2N6M9 denotes has
T257 1893-1896 http://www.uniprot.org/uniprot/B0UR12 denotes has
T258 1893-1896 http://www.uniprot.org/uniprot/Q2GLK1 denotes has
T259 1893-1896 http://www.uniprot.org/uniprot/Q0BZT0 denotes has
T260 1893-1896 http://www.uniprot.org/uniprot/Q8Y5K2 denotes has
T261 1893-1896 http://www.uniprot.org/uniprot/Q2GHG8 denotes has
T262 1893-1896 http://www.uniprot.org/uniprot/A8Z1Q0 denotes has
T263 1893-1896 http://www.uniprot.org/uniprot/B8ISP2 denotes has
T264 1893-1896 http://www.uniprot.org/uniprot/Q57DW5 denotes has
T265 1893-1896 http://www.uniprot.org/uniprot/Q5HQ52 denotes has
T266 1893-1896 http://www.uniprot.org/uniprot/Q3YRB4 denotes has
T267 1893-1896 http://www.uniprot.org/uniprot/Q4L5C9 denotes has
T268 1893-1896 http://www.uniprot.org/uniprot/B3CRU7 denotes has
T269 1893-1896 http://www.uniprot.org/uniprot/B9JVB6 denotes has
T270 1893-1896 http://www.uniprot.org/uniprot/A9W350 denotes has
T271 1893-1896 http://www.uniprot.org/uniprot/Q7A160 denotes has
T272 1893-1896 http://www.uniprot.org/uniprot/Q5GSI0 denotes has
T273 1893-1896 http://www.uniprot.org/uniprot/A4YVQ0 denotes has
T274 1893-1896 http://www.uniprot.org/uniprot/Q0BQ20 denotes has
T275 1893-1896 http://www.uniprot.org/uniprot/A8FCU5 denotes has
T276 1893-1896 http://www.uniprot.org/uniprot/A9VUA7 denotes has
T277 1893-1896 http://www.uniprot.org/uniprot/A6H039 denotes has
T278 1893-1896 http://www.uniprot.org/uniprot/Q5L115 denotes has
T279 1893-1896 http://www.uniprot.org/uniprot/Q2G350 denotes has
T280 1893-1896 http://www.uniprot.org/uniprot/B8H551 denotes has
T281 1893-1896 http://www.uniprot.org/uniprot/B3PVH0 denotes has
T282 1893-1896 http://www.uniprot.org/uniprot/Q3IXW9 denotes has
T283 1893-1896 http://www.uniprot.org/uniprot/Q2W552 denotes has
T284 1893-1896 http://www.uniprot.org/uniprot/B3CLF8 denotes has
T285 1893-1896 http://www.uniprot.org/uniprot/Q8CPM2 denotes has
T286 1893-1896 http://www.uniprot.org/uniprot/C0R5T8 denotes has
T287 1893-1896 http://www.uniprot.org/uniprot/B7KV80 denotes has
T288 1893-1896 http://www.uniprot.org/uniprot/Q5HAH7 denotes has
T289 1893-1896 http://www.uniprot.org/uniprot/Q2G2C0 denotes has
T290 1893-1896 http://www.uniprot.org/uniprot/Q7A2S8 denotes has
T291 1893-1896 http://www.uniprot.org/uniprot/C3P6V3 denotes has
T292 1893-1896 http://www.uniprot.org/uniprot/A8I7Y5 denotes has
T293 1893-1896 http://www.uniprot.org/uniprot/A3PQK0 denotes has
T294 1893-1896 http://www.uniprot.org/uniprot/B9KW13 denotes has
T295 1893-1896 http://www.uniprot.org/uniprot/Q929V9 denotes has
T296 1893-1896 http://www.uniprot.org/uniprot/A8GMQ9 denotes has
T297 1893-1896 http://www.uniprot.org/uniprot/A9HEV3 denotes has
T298 1893-1896 http://www.uniprot.org/uniprot/A5CF77 denotes has
T299 1893-1896 http://www.uniprot.org/uniprot/A9IVC8 denotes has
T300 1893-1896 http://www.uniprot.org/uniprot/Q5HGW9 denotes has
T301 1893-1896 http://purl.obolibrary.org/obo/PR_Q61647 denotes has
T302 1893-1896 http://www.uniprot.org/uniprot/Q1MIP9 denotes has
T303 1893-1896 http://www.uniprot.org/uniprot/A4WZ55 denotes has
T304 1893-1896 http://www.uniprot.org/uniprot/Q9K9M8 denotes has
T305 1893-1896 http://www.uniprot.org/uniprot/Q65K14 denotes has
T306 1893-1896 http://www.uniprot.org/uniprot/Q49WP0 denotes has
T307 1893-1896 http://www.uniprot.org/uniprot/Q28PL3 denotes has
T308 1893-1896 http://www.uniprot.org/uniprot/A8GRD0 denotes has
T309 1893-1896 http://www.uniprot.org/uniprot/Q8G1D1 denotes has
T310 1893-1896 http://www.uniprot.org/uniprot/A6QFX0 denotes has
T311 1893-1896 http://www.uniprot.org/uniprot/Q2YX60 denotes has
T312 1893-1896 http://www.uniprot.org/uniprot/Q2IWP3 denotes has
T313 1893-1896 http://www.uniprot.org/uniprot/Q214F0 denotes has
T314 1893-1896 http://www.uniprot.org/uniprot/Q982X5 denotes has
T315 1893-1896 http://www.uniprot.org/uniprot/B3QKF4 denotes has
T316 1893-1896 http://www.uniprot.org/uniprot/Q732C1 denotes has
T317 1893-1896 http://purl.obolibrary.org/obo/CHEBI_73878 denotes has
T318 1893-1896 http://www.uniprot.org/uniprot/Q6GA99 denotes has
T319 1893-1896 http://www.uniprot.org/uniprot/Q4UKQ2 denotes has
T320 1893-1896 http://www.uniprot.org/uniprot/A8GXM1 denotes has
T321 1893-1896 http://www.uniprot.org/uniprot/B5ZXY9 denotes has
T322 1893-1896 http://www.uniprot.org/uniprot/Q136Q9 denotes has
T323 1893-1896 http://www.uniprot.org/uniprot/A6U7T3 denotes has
T324 1893-1896 http://www.uniprot.org/uniprot/Q9A8H9 denotes has
T325 1893-1896 http://www.uniprot.org/uniprot/Q7A665 denotes has
T326 1893-1896 http://www.uniprot.org/uniprot/C3PMV5 denotes has
T327 1893-1896 http://www.uniprot.org/uniprot/C1KX11 denotes has
T328 1893-1896 http://www.uniprot.org/uniprot/Q1QKJ7 denotes has
T329 1942-1947 http://id.nlm.nih.gov/mesh/D010944 denotes plant

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 316-331 http://identifiers.org/oryzabase.gene/2983 denotes retrotransposon

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 531-546 hunflair:NA:Species denotes Oryza sativa cv
M_1 1561-1574 hunflair:NA:Chemical denotes glutamic acid
M_2 1340-1360 hunflair:NA:Species denotes Arabidopsis thaliana
M_3 1117-1126 hunflair:NA:Species denotes liverwort
M_4 270-282 hunflair:NA:Gene denotes endonuclease
M_5 548-558 hunflair:NA:Species denotes Nipponbare
M_6 1103-1112 hunflair:NA:Species denotes horsetail
M_7 1501-1511 hunflair:NA:Chemical denotes amino acid
M_8 123-127 hunflair:NA:Species denotes rice
M_9 631-635 hunflair:NA:Species denotes rice
M_10 701-705 hunflair:NA:Species denotes rice
M_11 826-830 hunflair:NA:Species denotes rice
M_12 933-937 hunflair:NA:Species denotes rice
M_13 138-157 hunflair:NA:Species denotes Oryza australiensis
M_14 1068-1079 hunflair:NA:Species denotes angiosperms
M_15 707-716 hunflair:NA:Species denotes O. sativa
M_16 339-343 hunflair:NA:Gene denotes Cin4
M_17 958-962 hunflair:NA:Gene denotes Cin4
M_18 302-307 hunflair:NA:Species denotes maize
M_19 570-586 hunflair:NA:Species denotes O. australiensis
M_20 1579-1587 hunflair:NA:Chemical denotes tyrosine
M_21 1081-1092 hunflair:NA:Species denotes gymnosperms
M_22 284-286 hunflair:NA:Gene denotes EN
M_23 514-516 hunflair:NA:Gene denotes EN
M_24 1322-1324 hunflair:NA:Gene denotes EN
M_25 1718-1720 hunflair:NA:Gene denotes EN
M_26 1094-1101 hunflair:NA:Species denotes bracken

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 316-331 http://identifiers.org/oryzabase.gene/2983 denotes retrotransposon
T2 544-546 http://identifiers.org/oryzabase.gene/22146 denotes cv
T90531 339-343 http://identifiers.org/ricegap/LOC_Os03g52560 denotes Cin4
T11136 339-343 http://identifiers.org/ricegap/LOC_Os01g73580 denotes Cin4
T3 544-546 http://identifiers.org/ricegap/LOC_Os05g49940 denotes cv
T4 958-962 http://identifiers.org/ricegap/LOC_Os03g52560 denotes Cin4
T5 958-962 http://identifiers.org/ricegap/LOC_Os01g73580 denotes Cin4
T9588 339-343 http://identifiers.org/rapdb.locus/Os03g0735800 denotes Cin4
T34323 339-343 http://identifiers.org/rapdb.locus/Os01g0966700 denotes Cin4
T64309 544-546 http://identifiers.org/rapdb.locus/Os05g0575000 denotes cv
T17776 958-962 http://identifiers.org/rapdb.locus/Os03g0735800 denotes Cin4
T16213 958-962 http://identifiers.org/rapdb.locus/Os01g0966700 denotes Cin4
M_0 531-546 hunflair:NA:Species denotes Oryza sativa cv
M_1 1561-1574 hunflair:NA:Chemical denotes glutamic acid
M_2 1340-1360 hunflair:NA:Species denotes Arabidopsis thaliana
M_3 1117-1126 hunflair:NA:Species denotes liverwort
M_4 270-282 hunflair:NA:Gene denotes endonuclease
M_5 548-558 hunflair:NA:Species denotes Nipponbare
M_6 1103-1112 hunflair:NA:Species denotes horsetail
M_7 1501-1511 hunflair:NA:Chemical denotes amino acid
M_8 123-127 hunflair:NA:Species denotes rice
M_9 631-635 hunflair:NA:Species denotes rice
M_10 701-705 hunflair:NA:Species denotes rice
M_11 826-830 hunflair:NA:Species denotes rice
M_12 933-937 hunflair:NA:Species denotes rice
M_13 138-157 hunflair:NA:Species denotes Oryza australiensis
M_14 1068-1079 hunflair:NA:Species denotes angiosperms
M_15 707-716 hunflair:NA:Species denotes O. sativa
M_16 339-343 hunflair:NA:Gene denotes Cin4
M_17 958-962 hunflair:NA:Gene denotes Cin4
M_18 302-307 hunflair:NA:Species denotes maize
M_19 570-586 hunflair:NA:Species denotes O. australiensis
M_20 1579-1587 hunflair:NA:Chemical denotes tyrosine
M_21 1081-1092 hunflair:NA:Species denotes gymnosperms
M_22 284-286 hunflair:NA:Gene denotes EN
M_23 514-516 hunflair:NA:Gene denotes EN
M_24 1322-1324 hunflair:NA:Gene denotes EN
M_25 1718-1720 hunflair:NA:Gene denotes EN
M_26 1094-1101 hunflair:NA:Species denotes bracken

FSU-PRGE

Id Subject Object Predicate Lexical cue
T1 270-282 protein denotes endonuclease
T2 284-286 protein denotes EN
T3 514-516 protein denotes EN
T4 1322-1324 protein denotes EN
T5 1672-1712 protein denotes AP (apurinic/apyrimidinic)-endonucleases
T6 1718-1720 protein denotes EN

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-75 Sentence denotes Non-LTR retrotransposons (LINEs) as ubiquitous components of plant genomes.
T2 76-344 Sentence denotes During the course of work aimed at isolating a rice gene from Oryza australiensis by PCR, the oligonucleotide primers used were found to generate a fragment that showed sequence homology to the endonuclease (EN) region of the maize non-LTR retrotransposon (LINE) Cin4.
T3 345-547 Sentence denotes We carried out further PCRs using oligonucleotide primers that hybridized to these sequences, and found that they amplified several fragments, each with homology to the EN regions, from Oryza sativa cv.
T4 548-587 Sentence denotes Nipponbare as well as O. australiensis.
T5 588-843 Sentence denotes We mapped the approximate locations of two rice LINE homologues by screening clones in a YAC library made from a rice (O. sativa) genome, and found that each homologue was present in a low copy number apparently at nonspecific regions on rice chromosomes.
T6 844-1127 Sentence denotes We then carried out PCR using degenerate oligonucleotide primers which hybridized to the rice LINE homologues and Cin4 to ascertain whether LINE homologues are present in a variety of members of the plant kingdom, including angiosperms, gymnosperms, bracken, horsetail and liverwort.
T7 1128-1253 Sentence denotes Cloning and nucleotide sequencing revealed that 53 clones obtained from 27 out of 33 plant species contained LINE homologues.
T8 1254-1402 Sentence denotes In addition to these homologues, we identified four homologues with EN regions in the Arabidopsis thaliana genome by a computer search of databases.
T9 1403-1713 Sentence denotes The nucleotide sequences of almost all the LINE homologues were greatly diverged, but the derived amino acid sequences were well conserved, and all contained glutamic acid and tyrosine residues at almost the same relative positions as in the the active site regions of AP (apurinic/apyrimidinic)-endonucleases.
T10 1714-1954 Sentence denotes The EN regions in the LINE homologues from closely related plant species show a closer phylogenetic relationship, indicating that sequence divergence during vertical transmission has been a major influence upon the evolution of plant LINEs.
T1 0-75 Sentence denotes Non-LTR retrotransposons (LINEs) as ubiquitous components of plant genomes.
T2 76-344 Sentence denotes During the course of work aimed at isolating a rice gene from Oryza australiensis by PCR, the oligonucleotide primers used were found to generate a fragment that showed sequence homology to the endonuclease (EN) region of the maize non-LTR retrotransposon (LINE) Cin4.
T3 345-547 Sentence denotes We carried out further PCRs using oligonucleotide primers that hybridized to these sequences, and found that they amplified several fragments, each with homology to the EN regions, from Oryza sativa cv.
T4 548-587 Sentence denotes Nipponbare as well as O. australiensis.
T5 588-843 Sentence denotes We mapped the approximate locations of two rice LINE homologues by screening clones in a YAC library made from a rice (O. sativa) genome, and found that each homologue was present in a low copy number apparently at nonspecific regions on rice chromosomes.
T6 844-1127 Sentence denotes We then carried out PCR using degenerate oligonucleotide primers which hybridized to the rice LINE homologues and Cin4 to ascertain whether LINE homologues are present in a variety of members of the plant kingdom, including angiosperms, gymnosperms, bracken, horsetail and liverwort.
T7 1128-1253 Sentence denotes Cloning and nucleotide sequencing revealed that 53 clones obtained from 27 out of 33 plant species contained LINE homologues.
T8 1254-1402 Sentence denotes In addition to these homologues, we identified four homologues with EN regions in the Arabidopsis thaliana genome by a computer search of databases.
T9 1403-1713 Sentence denotes The nucleotide sequences of almost all the LINE homologues were greatly diverged, but the derived amino acid sequences were well conserved, and all contained glutamic acid and tyrosine residues at almost the same relative positions as in the the active site regions of AP (apurinic/apyrimidinic)-endonucleases.
T10 1714-1954 Sentence denotes The EN regions in the LINE homologues from closely related plant species show a closer phylogenetic relationship, indicating that sequence divergence during vertical transmission has been a major influence upon the evolution of plant LINEs.
T1 0-75 Sentence denotes Non-LTR retrotransposons (LINEs) as ubiquitous components of plant genomes.
T2 76-344 Sentence denotes During the course of work aimed at isolating a rice gene from Oryza australiensis by PCR, the oligonucleotide primers used were found to generate a fragment that showed sequence homology to the endonuclease (EN) region of the maize non-LTR retrotransposon (LINE) Cin4.
T3 345-547 Sentence denotes We carried out further PCRs using oligonucleotide primers that hybridized to these sequences, and found that they amplified several fragments, each with homology to the EN regions, from Oryza sativa cv.
T4 548-587 Sentence denotes Nipponbare as well as O. australiensis.
T5 588-843 Sentence denotes We mapped the approximate locations of two rice LINE homologues by screening clones in a YAC library made from a rice (O. sativa) genome, and found that each homologue was present in a low copy number apparently at nonspecific regions on rice chromosomes.
T6 844-1127 Sentence denotes We then carried out PCR using degenerate oligonucleotide primers which hybridized to the rice LINE homologues and Cin4 to ascertain whether LINE homologues are present in a variety of members of the plant kingdom, including angiosperms, gymnosperms, bracken, horsetail and liverwort.
T7 1128-1253 Sentence denotes Cloning and nucleotide sequencing revealed that 53 clones obtained from 27 out of 33 plant species contained LINE homologues.
T8 1254-1402 Sentence denotes In addition to these homologues, we identified four homologues with EN regions in the Arabidopsis thaliana genome by a computer search of databases.
T9 1403-1713 Sentence denotes The nucleotide sequences of almost all the LINE homologues were greatly diverged, but the derived amino acid sequences were well conserved, and all contained glutamic acid and tyrosine residues at almost the same relative positions as in the the active site regions of AP (apurinic/apyrimidinic)-endonucleases.
T10 1714-1954 Sentence denotes The EN regions in the LINE homologues from closely related plant species show a closer phylogenetic relationship, indicating that sequence divergence during vertical transmission has been a major influence upon the evolution of plant LINEs.
T1 0-75 Sentence denotes Non-LTR retrotransposons (LINEs) as ubiquitous components of plant genomes.
T2 76-344 Sentence denotes During the course of work aimed at isolating a rice gene from Oryza australiensis by PCR, the oligonucleotide primers used were found to generate a fragment that showed sequence homology to the endonuclease (EN) region of the maize non-LTR retrotransposon (LINE) Cin4.
T3 345-547 Sentence denotes We carried out further PCRs using oligonucleotide primers that hybridized to these sequences, and found that they amplified several fragments, each with homology to the EN regions, from Oryza sativa cv.
T4 548-587 Sentence denotes Nipponbare as well as O. australiensis.
T5 588-843 Sentence denotes We mapped the approximate locations of two rice LINE homologues by screening clones in a YAC library made from a rice (O. sativa) genome, and found that each homologue was present in a low copy number apparently at nonspecific regions on rice chromosomes.
T6 844-1127 Sentence denotes We then carried out PCR using degenerate oligonucleotide primers which hybridized to the rice LINE homologues and Cin4 to ascertain whether LINE homologues are present in a variety of members of the plant kingdom, including angiosperms, gymnosperms, bracken, horsetail and liverwort.
T7 1128-1253 Sentence denotes Cloning and nucleotide sequencing revealed that 53 clones obtained from 27 out of 33 plant species contained LINE homologues.
T8 1254-1402 Sentence denotes In addition to these homologues, we identified four homologues with EN regions in the Arabidopsis thaliana genome by a computer search of databases.
T9 1403-1713 Sentence denotes The nucleotide sequences of almost all the LINE homologues were greatly diverged, but the derived amino acid sequences were well conserved, and all contained glutamic acid and tyrosine residues at almost the same relative positions as in the the active site regions of AP (apurinic/apyrimidinic)-endonucleases.
T10 1714-1954 Sentence denotes The EN regions in the LINE homologues from closely related plant species show a closer phylogenetic relationship, indicating that sequence divergence during vertical transmission has been a major influence upon the evolution of plant LINEs.