
PubMed:10068588
Annnotations
jnlpba-st-training
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 386-402 | cell_type | denotes | monocytoid cells |
T2 | 527-535 | protein | denotes | lysozyme |
T3 | 539-547 | protein | denotes | protease |
T4 | 611-623 | cell_line | denotes | T cell lines |
T5 | 698-716 | cell_type | denotes | HIV-infected cells |
T6 | 731-740 | protein | denotes | NF-kappaB |
genia-medco-coref
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
C1 | 14-60 | NP | denotes | human immunodeficiency virus type 1 expression |
C2 | 64-85 | NP | denotes | Gardnerella vaginalis |
C3 | 87-111 | NP | denotes | Bacterial vaginosis (BV) |
C4 | 222-243 | NP | denotes | Gardnerella vaginalis |
C6 | 305-307 | NP | denotes | BV |
C5 | 294-307 | NP | denotes | women with BV |
C7 | 309-329 | NP | denotes | G. vaginalis lysates |
C8 | 368-382 | NP | denotes | HIV expression |
C9 | 549-569 | NP | denotes | G. vaginalis lysates |
C10 | 585-599 | NP | denotes | HIV expression |
C11 | 625-645 | NP | denotes | G. vaginalis lysates |
C12 | 783-795 | NP | denotes | G. vaginalis |
C13 | 854-866 | NP | denotes | G. vaginalis |
C14 | 910-922 | NP | denotes | G. vaginalis |
C15 | 945-961 | NP | denotes | HIV transmission |
C16 | 976-990 | NP | denotes | HIV expression |
C17 | 1071-1087 | NP | denotes | HIV transmission |
C19 | 1102-1104 | NP | denotes | BV |
C18 | 1091-1104 | NP | denotes | women with BV |
R1 | C4 | C2 | coref-ident | Gardnerella vaginalis,Gardnerella vaginalis |
R2 | C6 | C3 | coref-ident | BV,Bacterial vaginosis (BV) |
R3 | C8 | C1 | coref-ident | HIV expression,human immunodeficiency virus type 1 expression |
R4 | C9 | C7 | coref-ident | G. vaginalis lysates,G. vaginalis lysates |
R5 | C10 | C8 | coref-ident | HIV expression,HIV expression |
R6 | C11 | C9 | coref-ident | G. vaginalis lysates,G. vaginalis lysates |
R7 | C12 | C4 | coref-ident | G. vaginalis,Gardnerella vaginalis |
R8 | C13 | C12 | coref-ident | G. vaginalis,G. vaginalis |
R9 | C14 | C13 | coref-ident | G. vaginalis,G. vaginalis |
R10 | C16 | C10 | coref-ident | HIV expression,HIV expression |
R11 | C17 | C15 | coref-ident | HIV transmission,HIV transmission |
R12 | C19 | C6 | coref-ident | BV,BV |
R13 | C18 | C5 | coref-ident | women with BV,women with BV |
semrep-sample
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
E1-ti-1 | 14-49 | cui:C0019704 | denotes | human immunodeficiency virus type 1 |
E2-ti-1 | 50-60 | cui:C0185117 | denotes | expression |
E3-ti-1 | 64-85 | cui:C0017098 | denotes | Gardnerella vaginalis |
E1-ab-1 | 87-106 | cui:C0085166 | denotes | Bacterial vaginosis |
E2-ab-1 | 134-143 | cui:C0205217 | denotes | increased |
E3-ab-1 | 144-148 | cui:C1521828 | denotes | rate |
E4-ab-1 | 152-171 | cui:C1519279 | denotes | sexual transmission |
E5-ab-1 | 175-216 | cui:C0019704 | denotes | human immunodeficiency virus (HIV) type 1 |
E6-ab-1 | 222-243 | cui:C0017098 | denotes | Gardnerella vaginalis |
E7-ab-1 | 247-257 | cui:C0332183 | denotes | frequently |
E8-ab-1 | 284-290 | cui:C1185740 | denotes | tracts |
E9-ab-1 | 294-299 | cui:C0043210 | denotes | women |
E10-ab-1 | 305-307 | cui:C0085166 | denotes | BV |
T1 | 267-271 | LOCATION_OF | denotes | from |
T2 | 291-293 | PART_OF | denotes | of |
T3 | 300-304 | PROCESS_OF | denotes | with |
E1-ab-2 | 312-321 | cui:C0750103 | denotes | vaginalis |
E2-ab-2 | 368-371 | cui:C0019682 | denotes | HIV |
E3-ab-2 | 372-382 | cui:C0185117 | denotes | expression |
E4-ab-2 | 386-402 | cui:C0333827 | denotes | monocytoid cells |
T4 | 383-385 | LOCATION_OF | denotes | in |
E1-ab-3 | 404-415 | cui:C1292856 | denotes | Stimulation |
E2-ab-3 | 434-440 | cui:C0205250 | denotes | higher |
E3-ab-3 | 473-482 | cui:C0439237 | denotes | degrees C |
E4-ab-3 | 489-492 | cui:C1524031 | denotes | min |
E5-ab-3 | 512-521 | cui:C0087111 | denotes | treatment |
E6-ab-3 | 527-535 | cui:C0026794 | denotes | lysozyme |
E7-ab-3 | 539-547 | cui:C1150095 | denotes | protease |
T5 | 509-511 | METHOD_OF | denotes | by |
T6 | 522-526 | USES | denotes | with |
E1-ab-4 | 552-561 | cui:C0750103 | denotes | vaginalis |
E2-ab-4 | 575-584 | cui:C1515877 | denotes | activated |
E3-ab-4 | 585-588 | cui:C0019682 | denotes | HIV |
E4-ab-4 | 589-599 | cui:C0185117 | denotes | expression |
E5-ab-4 | 603-610 | cui:C0205423 | denotes | certain |
E6-ab-4 | 613-623 | cui:C0007600 | denotes | cell lines |
T7 | 600-602 | LOCATION_OF | denotes | in |
E1-ab-5 | 628-637 | cui:C0750103 | denotes | vaginalis |
E2-ab-5 | 656-680 | cui:C0079517 | denotes | HIV long-terminal repeat |
E3-ab-5 | 681-694 | cui:C0040649 | denotes | transcription |
E4-ab-5 | 698-701 | cui:C0019682 | denotes | HIV |
E5-ab-5 | 702-710 | cui:C0439663 | denotes | infected |
E6-ab-5 | 711-716 | cui:C0007634 | denotes | cells |
E7-ab-5 | 721-730 | cui:C0205217 | denotes | increased |
E8-ab-5 | 731-740 | cui:C0079904 | denotes | NF-kappaB |
E9-ab-5 | 749-757 | cui:C0439167 | denotes | activity |
E10-ab-5 | 773-779 | cui:C1280500 | denotes | effect |
E11-ab-5 | 786-795 | cui:C0750103 | denotes | vaginalis |
E12-ab-5 | 799-802 | cui:C0019682 | denotes | HIV |
E13-ab-5 | 803-816 | cui:C0040649 | denotes | transcription |
T8 | 773-779 | INTERACTS_WITH | denotes | effect |
E1-ab-6 | 836-839 | cui:C0019682 | denotes | HIV |
E2-ab-6 | 840-850 | cui:C0033268 | denotes | production |
E3-ab-6 | 857-866 | cui:C0750103 | denotes | vaginalis |
E4-ab-6 | 889-894 | cui:C1185740 | denotes | tract |
E5-ab-6 | 881-904 | cui:C0729552 | denotes | genital tract infection |
E6-ab-6 | 913-922 | cui:C0750103 | denotes | vaginalis |
E7-ab-6 | 937-941 | cui:C0035647 | denotes | risk |
E8-ab-6 | 945-961 | cui:C1096045 | denotes | HIV transmission |
E9-ab-6 | 965-975 | cui:C0442808 | denotes | increasing |
E10-ab-6 | 976-979 | cui:C0019682 | denotes | HIV |
E11-ab-6 | 980-990 | cui:C0185117 | denotes | expression |
E12-ab-6 | 1006-1011 | cui:C1185740 | denotes | tract |
T9 | 889-904 | LOCATION_OF | denotes | tract infection |
T10 | 905-909 | PROCESS_OF | denotes | with |
T11 | 991-993 | LOCATION_OF | denotes | in |
E1-ab-7 | 1043-1047 | cui:C0449719 | denotes | part |
E2-ab-7 | 1053-1062 | cui:C0205217 | denotes | increased |
E3-ab-7 | 1063-1067 | cui:C1521828 | denotes | rate |
E4-ab-7 | 1071-1087 | cui:C1096045 | denotes | HIV transmission |
E5-ab-7 | 1091-1096 | cui:C0043210 | denotes | women |
E6-ab-7 | 1102-1104 | cui:C0085166 | denotes | BV |
T12 | 1088-1090 | PROCESS_OF | denotes | in |
T13 | 1097-1101 | PROCESS_OF | denotes | with |
R1 | E8-ab-1 | T1 | subjectOf | tracts,from |
R2 | E6-ab-1 | T1 | objectOf | Gardnerella vaginalis,from |
R3 | E8-ab-1 | T2 | subjectOf | tracts,of |
R4 | E9-ab-1 | T2 | objectOf | women,of |
R5 | E10-ab-1 | T3 | subjectOf | BV,with |
R6 | E9-ab-1 | T3 | objectOf | women,with |
R7 | E4-ab-2 | T4 | subjectOf | monocytoid cells,in |
R8 | E2-ab-2 | T4 | objectOf | HIV,in |
R9 | E5-ab-3 | T5 | subjectOf | treatment,by |
R10 | E1-ab-3 | T5 | objectOf | Stimulation,by |
R11 | E5-ab-3 | T6 | subjectOf | treatment,with |
R12 | E6-ab-3 | T6 | objectOf | lysozyme,with |
R13 | E6-ab-4 | T7 | subjectOf | cell lines,in |
R14 | E3-ab-4 | T7 | objectOf | HIV,in |
R15 | E11-ab-5 | T8 | subjectOf | vaginalis,effect |
R16 | E12-ab-5 | T8 | objectOf | HIV,effect |
R17 | E4-ab-6 | T9 | subjectOf | tract,tract infection |
R18 | E5-ab-6 | T9 | objectOf | genital tract infection,tract infection |
R19 | E6-ab-6 | T10 | subjectOf | vaginalis,with |
R20 | E1-ab-6 | T10 | objectOf | HIV,with |
R21 | E12-ab-6 | T11 | subjectOf | tract,in |
R22 | E10-ab-6 | T11 | objectOf | HIV,in |
R23 | E4-ab-7 | T12 | subjectOf | HIV transmission,in |
R24 | E5-ab-7 | T12 | objectOf | women,in |
R25 | E6-ab-7 | T13 | subjectOf | BV,with |
R26 | E5-ab-7 | T13 | objectOf | women,with |
pubmed-sentences-benchmark
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
S1 | 0-86 | Sentence | denotes | Activation of human immunodeficiency virus type 1 expression by Gardnerella vaginalis. |
S2 | 87-308 | Sentence | denotes | Bacterial vaginosis (BV) is associated with an increased rate of sexual transmission of human immunodeficiency virus (HIV) type 1, and Gardnerella vaginalis is frequently isolated from the genital tracts of women with BV. |
S3 | 309-403 | Sentence | denotes | G. vaginalis lysates were found to significantly stimulate HIV expression in monocytoid cells. |
S4 | 404-548 | Sentence | denotes | Stimulation was significantly higher when lysates were heated at 100 degrees C for 5 min but was reduced by treatment with lysozyme or protease. |
S5 | 549-624 | Sentence | denotes | G. vaginalis lysates also activated HIV expression in certain T cell lines. |
S6 | 625-817 | Sentence | denotes | G. vaginalis lysates activated HIV long-terminal repeat transcription in HIV-infected cells and increased NF-kappaB binding activity, indicating an effect by G. vaginalis on HIV transcription. |
S7 | 818-1012 | Sentence | denotes | The activation of HIV production by G. vaginalis suggests that genital tract infection with G. vaginalis increases the risk of HIV transmission by increasing HIV expression in the genital tract. |
S8 | 1013-1105 | Sentence | denotes | This may explain, at least in part, the increased rate of HIV transmission in women with BV. |
GENIAcorpus
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 14-49 | virus | denotes | human immunodeficiency virus type 1 |
T2 | 64-85 | mono_cell | denotes | Gardnerella vaginalis |
T3 | 87-106 | other_name | denotes | Bacterial vaginosis |
T4 | 108-110 | other_name | denotes | BV |
T5 | 175-216 | tissue | denotes | human immunodeficiency virus (HIV) type 1 |
T6 | 222-243 | mono_cell | denotes | Gardnerella vaginalis |
T7 | 276-290 | body_part | denotes | genital tracts |
T8 | 294-299 | multi_cell | denotes | women |
T9 | 305-307 | other_name | denotes | BV |
T10 | 309-321 | mono_cell | denotes | G. vaginalis |
T11 | 368-371 | virus | denotes | HIV |
T12 | 386-402 | cell_type | denotes | monocytoid cells |
T13 | 527-535 | protein_family_or_group | denotes | lysozyme |
T14 | 539-547 | protein_family_or_group | denotes | protease |
T15 | 549-561 | mono_cell | denotes | G. vaginalis |
T16 | 585-588 | virus | denotes | HIV |
T17 | 611-623 | cell_line | denotes | T cell lines |
T18 | 625-637 | mono_cell | denotes | G. vaginalis |
T19 | 656-659 | virus | denotes | HIV |
T20 | 698-701 | virus | denotes | HIV |
T21 | 731-740 | protein_complex | denotes | NF-kappaB |
T22 | 783-795 | mono_cell | denotes | G. vaginalis |
T23 | 799-802 | virus | denotes | HIV |
T24 | 836-839 | virus | denotes | HIV |
T25 | 854-866 | mono_cell | denotes | G. vaginalis |
T26 | 881-904 | other_name | denotes | genital tract infection |
T27 | 910-922 | mono_cell | denotes | G. vaginalis |
T28 | 945-948 | virus | denotes | HIV |
T29 | 976-979 | virus | denotes | HIV |
T30 | 998-1011 | body_part | denotes | genital tract |
T31 | 1071-1074 | virus | denotes | HIV |
T32 | 1091-1096 | multi_cell | denotes | women |
T33 | 1102-1104 | other_name | denotes | BV |
metamap-sample
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 15-50 | C0019704 | denotes | uman immunodeficiency virus type 1 |
T2 | 586-589 | C0019682 | denotes | IV |
T3 | 369-372 | C0019682 | denotes | IV |
T4 | 823-833 | C1879547 | denotes | ctivation |
T5 | 647-656 | C1879547 | denotes | ctivated |
T6 | 576-585 | C1879547 | denotes | ctivated |
T7 | 1-11 | C1879547 | denotes | ctivation |
T8 | 981-991 | C0185117 | denotes | xpression |
T9 | 590-600 | C0185117 | denotes | xpression |
T10 | 373-383 | C0185117 | denotes | xpression |
T11 | 51-61 | C0185117 | denotes | xpression |
T12 | 1103-1105 | C0085166 | denotes | V. |
T13 | 306-308 | C0085166 | denotes | V. |
T14 | 88-107 | C0085166 | denotes | acterial vaginosis |
T15 | 1072-1075 | C0086418 | denotes | IV |
T16 | 946-949 | C0086418 | denotes | IV |
T17 | 612-617 | C0039194 | denotes | cell |
T18 | 513-522 | C0039798 | denotes | reatment |
T19 | 657-681 | C0079517 | denotes | IV long-terminal repeat |
T20 | 553-562 | C0750103 | denotes | aginalis |
T21 | 313-322 | C0750103 | denotes | aginalis |
T22 | 550-551 | C0439267 | denotes | . |
T23 | 310-311 | C0439267 | denotes | . |
T24 | 938-942 | C0035647 | denotes | isk |
T25 | 540-548 | C0030946 | denotes | rotease. |
T26 | 528-536 | C0026794 | denotes | ysozyme |
T27 | 639-646 | C1881488 | denotes | ysates |
T28 | 563-570 | C1881488 | denotes | ysates |
T29 | 447-454 | C1881488 | denotes | ysates |
T30 | 323-330 | C1881488 | denotes | ysates |
T31 | 1092-1096 | C0043210 | denotes | omen |
T32 | 295-300 | C0043210 | denotes | omen |
T33 | 1072-1075 | C0021051 | denotes | IV |
T34 | 946-949 | C0021051 | denotes | IV |
T35 | 882-905 | C2314882 | denotes | enital tract infection |
T36 | 1007-1012 | C1185740 | denotes | ract. |
T37 | 285-291 | C1185740 | denotes | racts |
T38 | 1064-1068 | C0871208 | denotes | ate |
T39 | 145-149 | C0871208 | denotes | ate |
T40 | 999-1006 | C0559522 | denotes | enital |
T41 | 277-284 | C0559522 | denotes | enital |
T42 | 1054-1063 | C0205217 | denotes | ncreased |
T43 | 135-144 | C0205217 | denotes | ncreased |
T44 | 1069-1088 | C1160716 | denotes | f HIV transmission |
T45 | 943-962 | C1160716 | denotes | f HIV transmission |
T46 | 248-258 | C0332183 | denotes | requently |
T47 | 924-933 | C0442805 | denotes | ncreases |
T48 | 1044-1048 | C0449719 | denotes | art, |
T49 | 336-341 | C0150312 | denotes | ound |
T50 | 405-416 | C1948023 | denotes | timulation |
T51 | 868-876 | C1705535 | denotes | uggests |
T52 | 1035-1040 | C0547044 | denotes | east |
T53 | 732-749 | C1523084 | denotes | F-kappaB binding |
T54 | 490-493 | C0702093 | denotes | in |
T55 | 342-344 | C1883351 | denotes | o |
T56 | 435-441 | C0205250 | denotes | igher |
T57 | 619-624 | C0205132 | denotes | ines. |
T58 | 474-483 | C0439237 | denotes | egrees C |
T59 | 712-717 | C0007634 | denotes | ells |
T60 | 502-509 | C0392756 | denotes | educed |
T61 | 116-131 | C0332281 | denotes | ssociated with |
T62 | 774-779 | C1280500 | denotes | ffect |
T63 | 259-267 | C0205409 | denotes | solated |
T64 | 460-465 | C0018837 | denotes | eated |
T65 | 488-489 | C0439084 | denotes | |
T66 | 604-611 | C1704787 | denotes | ertain |
T67 | 966-976 | C0442808 | denotes | ncreasing |
T68 | 703-711 | C0439663 | denotes | nfected |
T69 | 387-403 | C0333827 | denotes | onocytoid cells. |
T70 | 841-851 | C0033268 | denotes | roduction |
PubmedHPO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 181-197 | HP_0002721 | denotes | immunodeficiency |