PubMed:10064103
Annnotations
jnlpba-st-training
{"project":"jnlpba-st-training","denotations":[{"id":"T1","span":{"begin":0,"end":34},"obj":"cell_type"},{"id":"T2","span":{"begin":117,"end":164},"obj":"protein"},{"id":"T3","span":{"begin":165,"end":174},"obj":"protein"},{"id":"T4","span":{"begin":257,"end":266},"obj":"protein"},{"id":"T5","span":{"begin":382,"end":391},"obj":"protein"},{"id":"T6","span":{"begin":570,"end":579},"obj":"protein"},{"id":"T7","span":{"begin":602,"end":645},"obj":"cell_type"},{"id":"T8","span":{"begin":765,"end":774},"obj":"protein"},{"id":"T9","span":{"begin":888,"end":900},"obj":"protein"},{"id":"T10","span":{"begin":944,"end":953},"obj":"protein"},{"id":"T11","span":{"begin":1034,"end":1048},"obj":"protein"},{"id":"T12","span":{"begin":1367,"end":1376},"obj":"protein"},{"id":"T13","span":{"begin":1405,"end":1448},"obj":"cell_type"},{"id":"T14","span":{"begin":1490,"end":1510},"obj":"protein"},{"id":"T15","span":{"begin":1511,"end":1520},"obj":"protein"},{"id":"T16","span":{"begin":1532,"end":1575},"obj":"cell_type"},{"id":"T17","span":{"begin":1663,"end":1672},"obj":"protein"},{"id":"T18","span":{"begin":1782,"end":1791},"obj":"protein"}],"text":"Peripheral blood mononuclear cells isolated from patients with diabetic nephropathy show increased activation of the oxidative-stress sensitive transcription factor NF-kappaB.\nIncreased oxidative stress and subsequent activation of the transcription factor NF-kappaB has been linked to the development of late diabetic complications. To determine whether oxidative stress dependent NF-kappaB activation is evident in patients with diabetic nephropathy we used an Electrophoretic Mobility Shift Assay based semiquantitative detection system which enabled us to determine NF-kappaB activation in ex vivo isolated peripheral blood mononuclear cells. We examined 33 patients with diabetes mellitus (Type I and Type II). Patients with diabetic nephropathy showed higher NF-kappaB binding activity in Electrophoretic Mobility Shift Assays and stronger immunohistological staining for activated NF-kappaBp65 than patients without renal complications. NF-kappaB binding activity correlated with the degree of albuminuria (r = 0.316) and with thrombomodulin plasma concentrations (r = 0.33), indicative for albuminuria associated endothelial dysfunction. In a 3 day intervention study in which 600 mg of the antioxidant thioctic acid (alpha-lipoic acid) per day were given to nine patients with diabetic nephropathy oxidative stress in plasma samples was decreased by 48% and NF-kappaB binding activity in ex vivo isolated peripheral blood mononuclear cells by 38%. In conclusion, activation of the transcription factor NF-kappaB in ex vivo isolated peripheral blood mononuclear cells of patients with diabetes mellitus correlates with the degree of diabetic nephropathy. NF-kappaB activation is at least in part dependent on oxidative stress since thioctic acid (alpha-lipoic acid) reduced NF-kappaB binding activity."}
genia-medco-coref
{"project":"genia-medco-coref","denotations":[{"id":"C2","span":{"begin":63,"end":83},"obj":"NP"},{"id":"C1","span":{"begin":49,"end":83},"obj":"NP"},{"id":"C3","span":{"begin":113,"end":174},"obj":"NP"},{"id":"C4","span":{"begin":232,"end":266},"obj":"NP"},{"id":"C6","span":{"begin":431,"end":451},"obj":"NP"},{"id":"C5","span":{"begin":417,"end":451},"obj":"NP"},{"id":"C7","span":{"begin":460,"end":539},"obj":"NP"},{"id":"C8","span":{"begin":540,"end":545},"obj":"NP"},{"id":"C9","span":{"begin":594,"end":645},"obj":"NP"},{"id":"C10","span":{"begin":676,"end":714},"obj":"NP"},{"id":"C12","span":{"begin":730,"end":750},"obj":"NP"},{"id":"C11","span":{"begin":716,"end":750},"obj":"NP"},{"id":"C13","span":{"begin":944,"end":970},"obj":"NP"},{"id":"C14","span":{"begin":1149,"end":1175},"obj":"NP"},{"id":"C15","span":{"begin":1179,"end":1184},"obj":"NP"},{"id":"C16","span":{"begin":1286,"end":1306},"obj":"NP"},{"id":"C17","span":{"begin":1397,"end":1448},"obj":"NP"},{"id":"C18","span":{"begin":1486,"end":1520},"obj":"NP"},{"id":"C19","span":{"begin":1593,"end":1610},"obj":"NP"},{"id":"C20","span":{"begin":1641,"end":1661},"obj":"NP"},{"id":"C21","span":{"begin":1782,"end":1808},"obj":"NP"}],"relations":[{"id":"R1","pred":"coref-ident","subj":"C4","obj":"C3"},{"id":"R2","pred":"coref-ident","subj":"C6","obj":"C2"},{"id":"R3","pred":"coref-ident","subj":"C5","obj":"C1"},{"id":"R4","pred":"coref-relat","subj":"C8","obj":"C7"},{"id":"R5","pred":"coref-ident","subj":"C12","obj":"C6"},{"id":"R6","pred":"coref-ident","subj":"C11","obj":"C5"},{"id":"R7","pred":"coref-relat","subj":"C15","obj":"C14"},{"id":"R8","pred":"coref-ident","subj":"C16","obj":"C12"},{"id":"R9","pred":"coref-ident","subj":"C17","obj":"C9"},{"id":"R10","pred":"coref-ident","subj":"C18","obj":"C4"},{"id":"R11","pred":"coref-ident","subj":"C19","obj":"C10"},{"id":"R12","pred":"coref-ident","subj":"C20","obj":"C16"},{"id":"R13","pred":"coref-ident","subj":"C21","obj":"C13"}],"text":"Peripheral blood mononuclear cells isolated from patients with diabetic nephropathy show increased activation of the oxidative-stress sensitive transcription factor NF-kappaB.\nIncreased oxidative stress and subsequent activation of the transcription factor NF-kappaB has been linked to the development of late diabetic complications. To determine whether oxidative stress dependent NF-kappaB activation is evident in patients with diabetic nephropathy we used an Electrophoretic Mobility Shift Assay based semiquantitative detection system which enabled us to determine NF-kappaB activation in ex vivo isolated peripheral blood mononuclear cells. We examined 33 patients with diabetes mellitus (Type I and Type II). Patients with diabetic nephropathy showed higher NF-kappaB binding activity in Electrophoretic Mobility Shift Assays and stronger immunohistological staining for activated NF-kappaBp65 than patients without renal complications. NF-kappaB binding activity correlated with the degree of albuminuria (r = 0.316) and with thrombomodulin plasma concentrations (r = 0.33), indicative for albuminuria associated endothelial dysfunction. In a 3 day intervention study in which 600 mg of the antioxidant thioctic acid (alpha-lipoic acid) per day were given to nine patients with diabetic nephropathy oxidative stress in plasma samples was decreased by 48% and NF-kappaB binding activity in ex vivo isolated peripheral blood mononuclear cells by 38%. In conclusion, activation of the transcription factor NF-kappaB in ex vivo isolated peripheral blood mononuclear cells of patients with diabetes mellitus correlates with the degree of diabetic nephropathy. NF-kappaB activation is at least in part dependent on oxidative stress since thioctic acid (alpha-lipoic acid) reduced NF-kappaB binding activity."}
semrep-sample
{"project":"semrep-sample","denotations":[{"id":"E1-ti-1","span":{"begin":0,"end":34},"obj":"cui:C1321301"},{"id":"E2-ti-1","span":{"begin":49,"end":57},"obj":"cui:C0030705"},{"id":"E3-ti-1","span":{"begin":63,"end":83},"obj":"cui:C0011881"},{"id":"E4-ti-1","span":{"begin":89,"end":98},"obj":"cui:C0205217"},{"id":"E5-ti-1","span":{"begin":117,"end":133},"obj":"cui:C0242606"},{"id":"E6-ti-1","span":{"begin":134,"end":143},"obj":"cui:C0332324"},{"id":"E7-ti-1","span":{"begin":144,"end":164},"obj":"cui:C0040648"},{"id":"E8-ti-1","span":{"begin":165,"end":174},"obj":"cui:C0079904"},{"id":"T1","span":{"begin":58,"end":62},"obj":"PROCESS_OF"},{"id":"E1-ab-1","span":{"begin":176,"end":185},"obj":"cui:C0205217"},{"id":"E2-ab-1","span":{"begin":186,"end":202},"obj":"cui:C0242606"},{"id":"E3-ab-1","span":{"begin":207,"end":217},"obj":"cui:C0750530"},{"id":"E4-ab-1","span":{"begin":236,"end":256},"obj":"cui:C0040648"},{"id":"E5-ab-1","span":{"begin":257,"end":266},"obj":"cui:C0079904"},{"id":"E6-ab-1","span":{"begin":290,"end":301},"obj":"cui:C1527148"},{"id":"E7-ab-1","span":{"begin":305,"end":309},"obj":"cui:C0205087"},{"id":"E8-ab-1","span":{"begin":310,"end":332},"obj":"cui:C0271672"},{"id":"E1-ab-2","span":{"begin":355,"end":371},"obj":"cui:C0242606"},{"id":"E2-ab-2","span":{"begin":382,"end":391},"obj":"cui:C0079904"},{"id":"E3-ab-2","span":{"begin":417,"end":425},"obj":"cui:C0030705"},{"id":"E4-ab-2","span":{"begin":431,"end":451},"obj":"cui:C0011881"},{"id":"E5-ab-2","span":{"begin":463,"end":499},"obj":"cui:C0949632"},{"id":"E6-ab-2","span":{"begin":506,"end":522},"obj":"cui:C0522525"},{"id":"E7-ab-2","span":{"begin":523,"end":532},"obj":"cui:C1511790"},{"id":"E8-ab-2","span":{"begin":533,"end":539},"obj":"cui:C0449913"},{"id":"E9-ab-2","span":{"begin":570,"end":579},"obj":"cui:C0079904"},{"id":"E10-ab-2","span":{"begin":611,"end":645},"obj":"cui:C1321301"},{"id":"T2","span":{"begin":426,"end":430},"obj":"PROCESS_OF"},{"id":"E1-ab-3","span":{"begin":662,"end":670},"obj":"cui:C0030705"},{"id":"E2-ab-3","span":{"begin":676,"end":693},"obj":"cui:C0011849"},{"id":"E3-ab-3","span":{"begin":695,"end":699},"obj":"cui:C1547052"},{"id":"E4-ab-3","span":{"begin":706,"end":713},"obj":"cui:C0441730"},{"id":"T3","span":{"begin":671,"end":675},"obj":"PROCESS_OF"},{"id":"E1-ab-4","span":{"begin":716,"end":724},"obj":"cui:C0030705"},{"id":"E2-ab-4","span":{"begin":730,"end":750},"obj":"cui:C0011881"},{"id":"E3-ab-4","span":{"begin":758,"end":764},"obj":"cui:C0205250"},{"id":"E4-ab-4","span":{"begin":765,"end":774},"obj":"cui:C0079904"},{"id":"E5-ab-4","span":{"begin":783,"end":791},"obj":"cui:C0439167"},{"id":"E6-ab-4","span":{"begin":795,"end":832},"obj":"cui:C0949632"},{"id":"E7-ab-4","span":{"begin":837,"end":845},"obj":"cui:C0442821"},{"id":"E8-ab-4","span":{"begin":878,"end":887},"obj":"cui:C1515877"},{"id":"E9-ab-4","span":{"begin":906,"end":914},"obj":"cui:C0030705"},{"id":"E10-ab-4","span":{"begin":923,"end":928},"obj":"cui:C0022646"},{"id":"E11-ab-4","span":{"begin":929,"end":942},"obj":"cui:C0009566"},{"id":"T4","span":{"begin":725,"end":729},"obj":"PROCESS_OF"},{"id":"T5","span":{"begin":923,"end":942},"obj":"LOCATION_OF"},{"id":"E1-ab-5","span":{"begin":944,"end":953},"obj":"cui:C0079904"},{"id":"E2-ab-5","span":{"begin":962,"end":970},"obj":"cui:C0439167"},{"id":"E3-ab-5","span":{"begin":1001,"end":1012},"obj":"cui:C0001925"},{"id":"E4-ab-5","span":{"begin":1034,"end":1048},"obj":"cui:C0145779"},{"id":"E5-ab-5","span":{"begin":1049,"end":1070},"obj":"cui:C0683150"},{"id":"E6-ab-5","span":{"begin":1098,"end":1109},"obj":"cui:C0001925"},{"id":"E7-ab-5","span":{"begin":1121,"end":1144},"obj":"cui:C0856169"},{"id":"T6","span":{"begin":1110,"end":1120},"obj":"ASSOCIATED_WITH"},{"id":"E1-ab-6","span":{"begin":1151,"end":1156},"obj":"cui:C1442459"},{"id":"E2-ab-6","span":{"begin":1157,"end":1175},"obj":"cui:C0021810"},{"id":"E3-ab-6","span":{"begin":1199,"end":1210},"obj":"cui:C0003402"},{"id":"E4-ab-6","span":{"begin":1211,"end":1224},"obj":"cui:C0023791"},{"id":"E5-ab-6","span":{"begin":1226,"end":1243},"obj":"cui:C0023791"},{"id":"E6-ab-6","span":{"begin":1249,"end":1252},"obj":"cui:C0439228"},{"id":"E7-ab-6","span":{"begin":1267,"end":1271},"obj":"cui:C0205455"},{"id":"E8-ab-6","span":{"begin":1272,"end":1280},"obj":"cui:C0030705"},{"id":"E9-ab-6","span":{"begin":1286,"end":1306},"obj":"cui:C0011881"},{"id":"E10-ab-6","span":{"begin":1307,"end":1323},"obj":"cui:C0242606"},{"id":"E11-ab-6","span":{"begin":1327,"end":1341},"obj":"cui:C0444263"},{"id":"E12-ab-6","span":{"begin":1367,"end":1376},"obj":"cui:C0214222"},{"id":"E13-ab-6","span":{"begin":1385,"end":1393},"obj":"cui:C0439167"},{"id":"E14-ab-6","span":{"begin":1414,"end":1448},"obj":"cui:C1321301"},{"id":"T7","span":{"begin":1199,"end":1224},"obj":"ISA"},{"id":"T8","span":{"begin":1281,"end":1285},"obj":"PROCESS_OF"},{"id":"E1-ab-7","span":{"begin":1490,"end":1510},"obj":"cui:C0040648"},{"id":"E2-ab-7","span":{"begin":1511,"end":1520},"obj":"cui:C0079904"},{"id":"E3-ab-7","span":{"begin":1541,"end":1575},"obj":"cui:C1321301"},{"id":"E4-ab-7","span":{"begin":1579,"end":1587},"obj":"cui:C0030705"},{"id":"E5-ab-7","span":{"begin":1593,"end":1610},"obj":"cui:C0011849"},{"id":"E6-ab-7","span":{"begin":1641,"end":1661},"obj":"cui:C0011881"},{"id":"T9","span":{"begin":1576,"end":1578},"obj":"PART_OF"},{"id":"T10","span":{"begin":1588,"end":1592},"obj":"PROCESS_OF"},{"id":"E1-ab-8","span":{"begin":1663,"end":1672},"obj":"cui:C0214222"},{"id":"E2-ab-8","span":{"begin":1699,"end":1703},"obj":"cui:C0449719"},{"id":"E3-ab-8","span":{"begin":1717,"end":1733},"obj":"cui:C0242606"},{"id":"E4-ab-8","span":{"begin":1740,"end":1753},"obj":"cui:C0023791"},{"id":"E5-ab-8","span":{"begin":1755,"end":1772},"obj":"cui:C0023791"},{"id":"E6-ab-8","span":{"begin":1774,"end":1781},"obj":"cui:C0392756"},{"id":"E7-ab-8","span":{"begin":1782,"end":1791},"obj":"cui:C0214222"},{"id":"E8-ab-8","span":{"begin":1800,"end":1808},"obj":"cui:C0439167"},{"id":"T11","span":{"begin":1673,"end":1683},"obj":"STIMULATES"}],"relations":[{"id":"R1","pred":"subjectOf","subj":"E3-ti-1","obj":"T1"},{"id":"R2","pred":"objectOf","subj":"E2-ti-1","obj":"T1"},{"id":"R3","pred":"subjectOf","subj":"E4-ab-2","obj":"T2"},{"id":"R4","pred":"objectOf","subj":"E3-ab-2","obj":"T2"},{"id":"R5","pred":"subjectOf","subj":"E2-ab-3","obj":"T3"},{"id":"R6","pred":"objectOf","subj":"E1-ab-3","obj":"T3"},{"id":"R7","pred":"subjectOf","subj":"E2-ab-4","obj":"T4"},{"id":"R8","pred":"objectOf","subj":"E1-ab-4","obj":"T4"},{"id":"R9","pred":"subjectOf","subj":"E10-ab-4","obj":"T5"},{"id":"R10","pred":"objectOf","subj":"E11-ab-4","obj":"T5"},{"id":"R11","pred":"subjectOf","subj":"E4-ab-5","obj":"T6"},{"id":"R12","pred":"objectOf","subj":"E7-ab-5","obj":"T6"},{"id":"R13","pred":"subjectOf","subj":"E4-ab-6","obj":"T7"},{"id":"R14","pred":"objectOf","subj":"E3-ab-6","obj":"T7"},{"id":"R15","pred":"subjectOf","subj":"E10-ab-6","obj":"T8"},{"id":"R16","pred":"objectOf","subj":"E8-ab-6","obj":"T8"},{"id":"R17","pred":"subjectOf","subj":"E3-ab-7","obj":"T9"},{"id":"R18","pred":"objectOf","subj":"E4-ab-7","obj":"T9"},{"id":"R19","pred":"subjectOf","subj":"E5-ab-7","obj":"T10"},{"id":"R20","pred":"objectOf","subj":"E4-ab-7","obj":"T10"},{"id":"R21","pred":"subjectOf","subj":"E4-ab-8","obj":"T11"},{"id":"R22","pred":"objectOf","subj":"E1-ab-8","obj":"T11"}],"text":"Peripheral blood mononuclear cells isolated from patients with diabetic nephropathy show increased activation of the oxidative-stress sensitive transcription factor NF-kappaB.\nIncreased oxidative stress and subsequent activation of the transcription factor NF-kappaB has been linked to the development of late diabetic complications. To determine whether oxidative stress dependent NF-kappaB activation is evident in patients with diabetic nephropathy we used an Electrophoretic Mobility Shift Assay based semiquantitative detection system which enabled us to determine NF-kappaB activation in ex vivo isolated peripheral blood mononuclear cells. We examined 33 patients with diabetes mellitus (Type I and Type II). Patients with diabetic nephropathy showed higher NF-kappaB binding activity in Electrophoretic Mobility Shift Assays and stronger immunohistological staining for activated NF-kappaBp65 than patients without renal complications. NF-kappaB binding activity correlated with the degree of albuminuria (r = 0.316) and with thrombomodulin plasma concentrations (r = 0.33), indicative for albuminuria associated endothelial dysfunction. In a 3 day intervention study in which 600 mg of the antioxidant thioctic acid (alpha-lipoic acid) per day were given to nine patients with diabetic nephropathy oxidative stress in plasma samples was decreased by 48% and NF-kappaB binding activity in ex vivo isolated peripheral blood mononuclear cells by 38%. In conclusion, activation of the transcription factor NF-kappaB in ex vivo isolated peripheral blood mononuclear cells of patients with diabetes mellitus correlates with the degree of diabetic nephropathy. NF-kappaB activation is at least in part dependent on oxidative stress since thioctic acid (alpha-lipoic acid) reduced NF-kappaB binding activity."}
pubmed-sentences-benchmark
{"project":"pubmed-sentences-benchmark","denotations":[{"id":"S1","span":{"begin":0,"end":175},"obj":"Sentence"},{"id":"S2","span":{"begin":176,"end":333},"obj":"Sentence"},{"id":"S3","span":{"begin":334,"end":646},"obj":"Sentence"},{"id":"S4","span":{"begin":647,"end":715},"obj":"Sentence"},{"id":"S5","span":{"begin":716,"end":943},"obj":"Sentence"},{"id":"S6","span":{"begin":944,"end":1145},"obj":"Sentence"},{"id":"S7","span":{"begin":1146,"end":1456},"obj":"Sentence"},{"id":"S8","span":{"begin":1457,"end":1662},"obj":"Sentence"},{"id":"S9","span":{"begin":1663,"end":1809},"obj":"Sentence"}],"text":"Peripheral blood mononuclear cells isolated from patients with diabetic nephropathy show increased activation of the oxidative-stress sensitive transcription factor NF-kappaB.\nIncreased oxidative stress and subsequent activation of the transcription factor NF-kappaB has been linked to the development of late diabetic complications. To determine whether oxidative stress dependent NF-kappaB activation is evident in patients with diabetic nephropathy we used an Electrophoretic Mobility Shift Assay based semiquantitative detection system which enabled us to determine NF-kappaB activation in ex vivo isolated peripheral blood mononuclear cells. We examined 33 patients with diabetes mellitus (Type I and Type II). Patients with diabetic nephropathy showed higher NF-kappaB binding activity in Electrophoretic Mobility Shift Assays and stronger immunohistological staining for activated NF-kappaBp65 than patients without renal complications. NF-kappaB binding activity correlated with the degree of albuminuria (r = 0.316) and with thrombomodulin plasma concentrations (r = 0.33), indicative for albuminuria associated endothelial dysfunction. In a 3 day intervention study in which 600 mg of the antioxidant thioctic acid (alpha-lipoic acid) per day were given to nine patients with diabetic nephropathy oxidative stress in plasma samples was decreased by 48% and NF-kappaB binding activity in ex vivo isolated peripheral blood mononuclear cells by 38%. In conclusion, activation of the transcription factor NF-kappaB in ex vivo isolated peripheral blood mononuclear cells of patients with diabetes mellitus correlates with the degree of diabetic nephropathy. NF-kappaB activation is at least in part dependent on oxidative stress since thioctic acid (alpha-lipoic acid) reduced NF-kappaB binding activity."}
GENIAcorpus
{"project":"GENIAcorpus","denotations":[{"id":"T1","span":{"begin":0,"end":34},"obj":"cell_type"},{"id":"T2","span":{"begin":49,"end":57},"obj":"multi_cell"},{"id":"T3","span":{"begin":63,"end":83},"obj":"other_name"},{"id":"T4","span":{"begin":117,"end":164},"obj":"protein_family_or_group"},{"id":"T5","span":{"begin":165,"end":174},"obj":"protein_complex"},{"id":"T6","span":{"begin":186,"end":202},"obj":"other_name"},{"id":"T7","span":{"begin":257,"end":266},"obj":"protein_complex"},{"id":"T8","span":{"begin":310,"end":332},"obj":"other_name"},{"id":"T9","span":{"begin":355,"end":371},"obj":"other_name"},{"id":"T10","span":{"begin":382,"end":391},"obj":"protein_complex"},{"id":"T11","span":{"begin":417,"end":425},"obj":"multi_cell"},{"id":"T12","span":{"begin":431,"end":451},"obj":"other_name"},{"id":"T13","span":{"begin":463,"end":499},"obj":"other_name"},{"id":"T14","span":{"begin":570,"end":579},"obj":"protein_complex"},{"id":"T15","span":{"begin":602,"end":645},"obj":"cell_type"},{"id":"T16","span":{"begin":662,"end":670},"obj":"multi_cell"},{"id":"T17","span":{"begin":676,"end":693},"obj":"other_name"},{"id":"T18","span":{"begin":730,"end":750},"obj":"other_name"},{"id":"T19","span":{"begin":765,"end":774},"obj":"protein_complex"},{"id":"T20","span":{"begin":795,"end":832},"obj":"other_name"},{"id":"T21","span":{"begin":888,"end":900},"obj":"protein_subunit"},{"id":"T22","span":{"begin":906,"end":914},"obj":"multi_cell"},{"id":"T23","span":{"begin":923,"end":942},"obj":"other_name"},{"id":"T24","span":{"begin":944,"end":953},"obj":"protein_complex"},{"id":"T25","span":{"begin":1001,"end":1012},"obj":"other_name"},{"id":"T26","span":{"begin":1034,"end":1048},"obj":"protein_molecule"},{"id":"T27","span":{"begin":1098,"end":1109},"obj":"other_name"},{"id":"T28","span":{"begin":1211,"end":1224},"obj":"other_organic_compound"},{"id":"T29","span":{"begin":1226,"end":1243},"obj":"other_organic_compound"},{"id":"T30","span":{"begin":1272,"end":1280},"obj":"multi_cell"},{"id":"T31","span":{"begin":1286,"end":1306},"obj":"other_name"},{"id":"T32","span":{"begin":1307,"end":1323},"obj":"other_name"},{"id":"T33","span":{"begin":1367,"end":1376},"obj":"protein_complex"},{"id":"T34","span":{"begin":1405,"end":1448},"obj":"cell_type"},{"id":"T35","span":{"begin":1490,"end":1510},"obj":"protein_family_or_group"},{"id":"T36","span":{"begin":1511,"end":1520},"obj":"protein_complex"},{"id":"T37","span":{"begin":1532,"end":1575},"obj":"cell_type"},{"id":"T38","span":{"begin":1579,"end":1587},"obj":"multi_cell"},{"id":"T39","span":{"begin":1593,"end":1610},"obj":"other_name"},{"id":"T40","span":{"begin":1641,"end":1661},"obj":"other_name"},{"id":"T41","span":{"begin":1663,"end":1672},"obj":"protein_complex"},{"id":"T42","span":{"begin":1717,"end":1733},"obj":"other_name"},{"id":"T43","span":{"begin":1740,"end":1753},"obj":"other_organic_compound"},{"id":"T44","span":{"begin":1755,"end":1772},"obj":"other_organic_compound"},{"id":"T45","span":{"begin":1782,"end":1791},"obj":"protein_complex"}],"text":"Peripheral blood mononuclear cells isolated from patients with diabetic nephropathy show increased activation of the oxidative-stress sensitive transcription factor NF-kappaB.\nIncreased oxidative stress and subsequent activation of the transcription factor NF-kappaB has been linked to the development of late diabetic complications. To determine whether oxidative stress dependent NF-kappaB activation is evident in patients with diabetic nephropathy we used an Electrophoretic Mobility Shift Assay based semiquantitative detection system which enabled us to determine NF-kappaB activation in ex vivo isolated peripheral blood mononuclear cells. We examined 33 patients with diabetes mellitus (Type I and Type II). Patients with diabetic nephropathy showed higher NF-kappaB binding activity in Electrophoretic Mobility Shift Assays and stronger immunohistological staining for activated NF-kappaBp65 than patients without renal complications. NF-kappaB binding activity correlated with the degree of albuminuria (r = 0.316) and with thrombomodulin plasma concentrations (r = 0.33), indicative for albuminuria associated endothelial dysfunction. In a 3 day intervention study in which 600 mg of the antioxidant thioctic acid (alpha-lipoic acid) per day were given to nine patients with diabetic nephropathy oxidative stress in plasma samples was decreased by 48% and NF-kappaB binding activity in ex vivo isolated peripheral blood mononuclear cells by 38%. In conclusion, activation of the transcription factor NF-kappaB in ex vivo isolated peripheral blood mononuclear cells of patients with diabetes mellitus correlates with the degree of diabetic nephropathy. NF-kappaB activation is at least in part dependent on oxidative stress since thioctic acid (alpha-lipoic acid) reduced NF-kappaB binding activity."}
metamap-sample
{"project":"metamap-sample","denotations":[{"id":"T1","span":{"begin":1308,"end":1324},"obj":"C0242606"},{"id":"T2","span":{"begin":356,"end":372},"obj":"C0242606"},{"id":"T3","span":{"begin":187,"end":203},"obj":"C0242606"},{"id":"T4","span":{"begin":118,"end":134},"obj":"C0242606"},{"id":"T5","span":{"begin":1580,"end":1588},"obj":"C0030705"},{"id":"T6","span":{"begin":1273,"end":1281},"obj":"C0030705"},{"id":"T7","span":{"begin":717,"end":725},"obj":"C0030705"},{"id":"T8","span":{"begin":907,"end":915},"obj":"C0030705"},{"id":"T9","span":{"begin":663,"end":671},"obj":"C0030705"},{"id":"T10","span":{"begin":418,"end":426},"obj":"C0030705"},{"id":"T11","span":{"begin":50,"end":58},"obj":"C0030705"},{"id":"T12","span":{"begin":752,"end":758},"obj":"C1547282"},{"id":"T13","span":{"begin":85,"end":89},"obj":"C1547282"},{"id":"T14","span":{"begin":1533,"end":1541},"obj":"C0205409"},{"id":"T15","span":{"begin":1406,"end":1414},"obj":"C0205409"},{"id":"T16","span":{"begin":603,"end":611},"obj":"C0205409"},{"id":"T17","span":{"begin":36,"end":44},"obj":"C0205409"},{"id":"T18","span":{"begin":1542,"end":1576},"obj":"C1321301"},{"id":"T19","span":{"begin":612,"end":646},"obj":"C1321301"},{"id":"T20","span":{"begin":1,"end":35},"obj":"C1321301"},{"id":"T21","span":{"begin":1664,"end":1684},"obj":"C1523116"},{"id":"T22","span":{"begin":1287,"end":1307},"obj":"C1442864"},{"id":"T23","span":{"begin":731,"end":751},"obj":"C1442864"},{"id":"T24","span":{"begin":432,"end":452},"obj":"C1442864"},{"id":"T25","span":{"begin":177,"end":186},"obj":"C0205217"},{"id":"T26","span":{"begin":90,"end":99},"obj":"C0205217"},{"id":"T27","span":{"begin":135,"end":143},"obj":"C1550474"},{"id":"T28","span":{"begin":1756,"end":1773},"obj":"C0023791"},{"id":"T29","span":{"begin":1741,"end":1754},"obj":"C0023791"},{"id":"T30","span":{"begin":1227,"end":1244},"obj":"C0023791"},{"id":"T31","span":{"begin":1212,"end":1225},"obj":"C0023791"},{"id":"T32","span":{"begin":1158,"end":1176},"obj":"C0021810"},{"id":"T33","span":{"begin":1200,"end":1211},"obj":"C0003402"},{"id":"T34","span":{"begin":1594,"end":1611},"obj":"C0011849"},{"id":"T35","span":{"begin":766,"end":775},"obj":"C0079904"},{"id":"T36","span":{"begin":1783,"end":1799},"obj":"C1523084"},{"id":"T37","span":{"begin":1368,"end":1385},"obj":"C1523084"},{"id":"T38","span":{"begin":945,"end":961},"obj":"C1523084"},{"id":"T39","span":{"begin":1265,"end":1267},"obj":"C1883351"},{"id":"T40","span":{"begin":335,"end":336},"obj":"C1883351"},{"id":"T41","span":{"begin":558,"end":560},"obj":"C1883351"},{"id":"T42","span":{"begin":1525,"end":1532},"obj":"C2348480"},{"id":"T43","span":{"begin":1398,"end":1405},"obj":"C2348480"},{"id":"T44","span":{"begin":595,"end":602},"obj":"C2348480"},{"id":"T45","span":{"begin":311,"end":333},"obj":"C0342257"},{"id":"T46","span":{"begin":924,"end":929},"obj":"C0022646"},{"id":"T47","span":{"begin":1386,"end":1394},"obj":"C1561536"},{"id":"T48","span":{"begin":963,"end":971},"obj":"C1561536"},{"id":"T49","span":{"begin":1632,"end":1638},"obj":"C0449286"},{"id":"T50","span":{"begin":992,"end":998},"obj":"C0449286"},{"id":"T51","span":{"begin":1705,"end":1714},"obj":"C0851827"},{"id":"T52","span":{"begin":373,"end":382},"obj":"C0851827"},{"id":"T53","span":{"begin":1111,"end":1121},"obj":"C0332281"},{"id":"T54","span":{"begin":501,"end":506},"obj":"C1705938"},{"id":"T55","span":{"begin":1461,"end":1471},"obj":"C1707478"},{"id":"T56","span":{"begin":547,"end":554},"obj":"C0562342"},{"id":"T57","span":{"begin":651,"end":659},"obj":"C0332128"},{"id":"T58","span":{"begin":1259,"end":1264},"obj":"C1442162"},{"id":"T59","span":{"begin":1700,"end":1704},"obj":"C0449719"},{"id":"T60","span":{"begin":707,"end":714},"obj":"C0441730"},{"id":"T61","span":{"begin":456,"end":460},"obj":"C1273517"},{"id":"T62","span":{"begin":1122,"end":1145},"obj":"C0856169"},{"id":"T63","span":{"begin":1328,"end":1342},"obj":"C0444263"},{"id":"T64","span":{"begin":930,"end":943},"obj":"C0009566"},{"id":"T65","span":{"begin":1190,"end":1191},"obj":"C2346927"},{"id":"T66","span":{"begin":187,"end":196},"obj":"C0311404"},{"id":"T67","span":{"begin":534,"end":540},"obj":"C0449913"},{"id":"T68","span":{"begin":1050,"end":1071},"obj":"C0683150"},{"id":"T69","span":{"begin":1347,"end":1356},"obj":"C0205216"},{"id":"T70","span":{"begin":1026,"end":1029},"obj":"C1515981"},{"id":"T71","span":{"begin":776,"end":792},"obj":"C2266866"},{"id":"T72","span":{"begin":1035,"end":1049},"obj":"C1420720"},{"id":"T73","span":{"begin":972,"end":982},"obj":"C1707520"},{"id":"T74","span":{"begin":866,"end":874},"obj":"C0487602"},{"id":"T75","span":{"begin":291,"end":302},"obj":"C0678723"},{"id":"T76","span":{"begin":306,"end":310},"obj":"C0205087"},{"id":"T77","span":{"begin":407,"end":414},"obj":"C0332120"},{"id":"T78","span":{"begin":277,"end":283},"obj":"C1517892"},{"id":"T79","span":{"begin":524,"end":533},"obj":"C1511790"},{"id":"T80","span":{"begin":1152,"end":1153},"obj":"C0439086"},{"id":"T81","span":{"begin":879,"end":887},"obj":"C1879547"},{"id":"T82","span":{"begin":208,"end":218},"obj":"C0332282"},{"id":"T83","span":{"begin":1268,"end":1271},"obj":"C0205455"},{"id":"T84","span":{"begin":838,"end":846},"obj":"C0442821"},{"id":"T85","span":{"begin":759,"end":765},"obj":"C0205250"}],"text":"Peripheral blood mononuclear cells isolated from patients with diabetic nephropathy show increased activation of the oxidative-stress sensitive transcription factor NF-kappaB.\nIncreased oxidative stress and subsequent activation of the transcription factor NF-kappaB has been linked to the development of late diabetic complications. To determine whether oxidative stress dependent NF-kappaB activation is evident in patients with diabetic nephropathy we used an Electrophoretic Mobility Shift Assay based semiquantitative detection system which enabled us to determine NF-kappaB activation in ex vivo isolated peripheral blood mononuclear cells. We examined 33 patients with diabetes mellitus (Type I and Type II). Patients with diabetic nephropathy showed higher NF-kappaB binding activity in Electrophoretic Mobility Shift Assays and stronger immunohistological staining for activated NF-kappaBp65 than patients without renal complications. NF-kappaB binding activity correlated with the degree of albuminuria (r = 0.316) and with thrombomodulin plasma concentrations (r = 0.33), indicative for albuminuria associated endothelial dysfunction. In a 3 day intervention study in which 600 mg of the antioxidant thioctic acid (alpha-lipoic acid) per day were given to nine patients with diabetic nephropathy oxidative stress in plasma samples was decreased by 48% and NF-kappaB binding activity in ex vivo isolated peripheral blood mononuclear cells by 38%. In conclusion, activation of the transcription factor NF-kappaB in ex vivo isolated peripheral blood mononuclear cells of patients with diabetes mellitus correlates with the degree of diabetic nephropathy. NF-kappaB activation is at least in part dependent on oxidative stress since thioctic acid (alpha-lipoic acid) reduced NF-kappaB binding activity."}
PubmedHPO
{"project":"PubmedHPO","denotations":[{"id":"T1","span":{"begin":440,"end":451},"obj":"HP_0000112"},{"id":"T2","span":{"begin":676,"end":693},"obj":"HP_0000819"},{"id":"T3","span":{"begin":739,"end":750},"obj":"HP_0000112"},{"id":"T4","span":{"begin":1001,"end":1012},"obj":"HP_0012592"},{"id":"T5","span":{"begin":1098,"end":1109},"obj":"HP_0012592"},{"id":"T6","span":{"begin":1295,"end":1306},"obj":"HP_0000112"},{"id":"T7","span":{"begin":1593,"end":1610},"obj":"HP_0000819"},{"id":"T8","span":{"begin":1650,"end":1661},"obj":"HP_0000112"}],"text":"Peripheral blood mononuclear cells isolated from patients with diabetic nephropathy show increased activation of the oxidative-stress sensitive transcription factor NF-kappaB.\nIncreased oxidative stress and subsequent activation of the transcription factor NF-kappaB has been linked to the development of late diabetic complications. To determine whether oxidative stress dependent NF-kappaB activation is evident in patients with diabetic nephropathy we used an Electrophoretic Mobility Shift Assay based semiquantitative detection system which enabled us to determine NF-kappaB activation in ex vivo isolated peripheral blood mononuclear cells. We examined 33 patients with diabetes mellitus (Type I and Type II). Patients with diabetic nephropathy showed higher NF-kappaB binding activity in Electrophoretic Mobility Shift Assays and stronger immunohistological staining for activated NF-kappaBp65 than patients without renal complications. NF-kappaB binding activity correlated with the degree of albuminuria (r = 0.316) and with thrombomodulin plasma concentrations (r = 0.33), indicative for albuminuria associated endothelial dysfunction. In a 3 day intervention study in which 600 mg of the antioxidant thioctic acid (alpha-lipoic acid) per day were given to nine patients with diabetic nephropathy oxidative stress in plasma samples was decreased by 48% and NF-kappaB binding activity in ex vivo isolated peripheral blood mononuclear cells by 38%. In conclusion, activation of the transcription factor NF-kappaB in ex vivo isolated peripheral blood mononuclear cells of patients with diabetes mellitus correlates with the degree of diabetic nephropathy. NF-kappaB activation is at least in part dependent on oxidative stress since thioctic acid (alpha-lipoic acid) reduced NF-kappaB binding activity."}