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PubMed:10027623 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 37-47 cell_type denotes leukocytes
T2 335-356 cell_type denotes leukocyte populations
T3 358-382 protein denotes steroid hormone receptor
T4 419-424 protein denotes bcl-2
T5 598-616 protein denotes oestrogen receptor
T6 629-634 protein denotes bcl-2
T7 666-676 cell_type denotes leukocytes
T8 854-869 cell_type denotes Apoptotic cells
T9 992-1016 protein denotes steroid hormone receptor
T10 1053-1058 protein denotes bcl-2
T11 1189-1205 cell_type denotes CD56+ CD16- eGLs
T12 1379-1383 cell_type denotes eGLs
T13 1440-1444 cell_type denotes eGLs
T14 1563-1595 cell_type denotes CD56+ CD16+ natural killer cells
T15 1597-1601 cell_type denotes eGLs
T16 1711-1724 protein denotes interleukin-2
T17 1759-1763 cell_type denotes eGLs
T18 1892-1903 cell_type denotes CD+8 T-cell
T19 1926-1944 protein denotes oestrogen receptor
T20 1949-1954 protein denotes bcl-2

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
10027623-2#135#140#gene596 419-424 gene596 denotes bcl-2
10027623-2#234#245#diseaseC0341858 518-529 diseaseC0341858 denotes adenomyosis
10027623-7#236#240#gene2214 1569-1573 gene2214 denotes CD16
10027623-7#236#240#gene2215 1569-1573 gene2215 denotes CD16
10027623-7#378#391#gene3558 1711-1724 gene3558 denotes interleukin-2
10027623-7#303#318#diseaseC0747845 1636-1651 diseaseC0747845 denotes early pregnancy
10027623-8#120#125#gene596 1949-1954 gene596 denotes bcl-2
10027623-8#204#217#diseaseC0014175 2033-2046 diseaseC0014175 denotes endometriosis
135#140#gene596234#245#diseaseC0341858 10027623-2#135#140#gene596 10027623-2#234#245#diseaseC0341858 associated_with bcl-2,adenomyosis
236#240#gene2214303#318#diseaseC0747845 10027623-7#236#240#gene2214 10027623-7#303#318#diseaseC0747845 associated_with CD16,early pregnancy
236#240#gene2215303#318#diseaseC0747845 10027623-7#236#240#gene2215 10027623-7#303#318#diseaseC0747845 associated_with CD16,early pregnancy
378#391#gene3558303#318#diseaseC0747845 10027623-7#378#391#gene3558 10027623-7#303#318#diseaseC0747845 associated_with interleukin-2,early pregnancy
120#125#gene596204#217#diseaseC0014175 10027623-8#120#125#gene596 10027623-8#204#217#diseaseC0014175 associated_with bcl-2,endometriosis

genia-medco-coref

Id Subject Object Predicate Lexical cue
C2 73-86 NP denotes endometriosis
C1 0-86 NP denotes Phenotypic and functional studies of leukocytes in human endometrium and endometriosis
C3 105-118 NP denotes endometriosis
C4 120-151 NP denotes a common and disabling disorder
C5 284-297 NP denotes These studies
C6 335-356 NP denotes leukocyte populations
C8 419-435 NP denotes bcl-2 expression
C7 358-449 NP denotes steroid hormone receptor expression, proliferative activity, bcl-2 expression and apoptosis
C9 501-514 NP denotes endometriosis
C10 553-572 NP denotes the menstrual cycle
C11 736-749 NP denotes endometriosis
C12 755-802 NP denotes CD56+ endometrial granulated lymphocytes (eGLs)
C13 940-953 NP denotes endometriosis
C14 1102-1121 NP denotes eutopic endometrium
C15 1440-1444 NP denotes eGLs
C16 1450-1474 NP denotes non-pregnant endometrium
C17 1482-1501 NP denotes the menstrual cycle
C18 1522-1527 NP denotes those
C19 1607-1631 NP denotes non-pregnant endometrium
C20 1759-1763 NP denotes eGLs
C21 1804-1827 NP denotes the eutopic endometrium
C22 1829-1834 NP denotes Their
C23 1949-1965 NP denotes bcl-2 expression
C24 2033-2046 NP denotes endometriosis
R1 C3 C2 coref-ident endometriosis,endometriosis
R2 C4 C3 coref-appos a common and disabling disorder,endometriosis
R3 C5 C1 coref-ident These studies,Phenotypic and functional studies of leukocytes in human endometrium and endometriosis
R4 C7 C6 coref-appos "steroid hormone receptor expression, proliferative activity, bcl-2 expression and apoptosis",leukocyte populations
R5 C9 C3 coref-ident endometriosis,endometriosis
R6 C11 C9 coref-ident endometriosis,endometriosis
R7 C13 C11 coref-ident endometriosis,endometriosis
R8 C15 C12 coref-ident eGLs,CD56+ endometrial granulated lymphocytes (eGLs)
R9 C17 C10 coref-ident the menstrual cycle,the menstrual cycle
R10 C18 C15 coref-pron those,eGLs
R11 C19 C16 coref-ident non-pregnant endometrium,non-pregnant endometrium
R12 C20 C18 coref-ident eGLs,those
R13 C21 C14 coref-ident the eutopic endometrium,eutopic endometrium
R14 C22 C20 coref-pron Their,eGLs
R15 C23 C8 coref-ident bcl-2 expression,bcl-2 expression
R16 C24 C13 coref-ident endometriosis,endometriosis

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-87 Sentence denotes Phenotypic and functional studies of leukocytes in human endometrium and endometriosis.
S2 88-283 Sentence denotes The aetiology of endometriosis, a common and disabling disorder, is presently unknown, although immune dysfunction could allow ectopic endometrial fragments to survive outside the uterine cavity.
S3 284-573 Sentence denotes These studies investigate the relationship between leukocyte populations, steroid hormone receptor expression, proliferative activity, bcl-2 expression and apoptosis in eutopic and ectopic endometrium from women with endometriosis or adenomyosis at different phases of the menstrual cycle.
S4 574-853 Sentence denotes Significantly increased oestrogen receptor expression, bcl-2 expression and numbers of CD8+ leukocytes were found in ectopic compared with eutopic endometrium in endometriosis, and CD56+ endometrial granulated lymphocytes (eGLs) were significantly reduced in ectopic endometrium.
S5 854-922 Sentence denotes Apoptotic cells were rarely found in control and subject endometria.
S6 923-1176 Sentence denotes In contrast with endometriosis, adenomyotic lesions showed identical steroid hormone receptor expression, proliferative activity, bcl-2 expression and leukocyte subpopulations to eutopic endometrium, indicating different aetiologies for these disorders.
S7 1177-1332 Sentence denotes The unusual CD56+ CD16- eGLs present in large numbers in late secretory phase eutopic endometrium were highly purified (>98%) by immunomagnetic separation.
S8 1333-1596 Sentence denotes Except for a negligible cytotoxic activity of eGLs from early proliferative samples, cytotoxic activity of eGLs from non-pregnant endometrium during the menstrual cycle was comparable with those in peripheral blood, predominantly CD56+ CD16+ natural killer cells.
S9 1597-1758 Sentence denotes eGLs from non-pregnant endometrium and early pregnancy showed a variable proliferative response to 5 and 100 U/ml interleukin-2 over 48-h and 120-h time courses.
S10 1759-1828 Sentence denotes eGLs are evidently functionally important in the eutopic endometrium.
S11 1829-2047 Sentence denotes Their absence in endometriotic lesions together with increased CD+8 T-cell numbers and increased oestrogen receptor and bcl-2 expression may have significant effects on the development and progression of endometriosis.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 37-47 cell_type denotes leukocytes
T2 51-68 tissue denotes human endometrium
T3 73-86 other_name denotes endometriosis
T4 105-118 other_name denotes endometriosis
T5 184-202 other_name denotes immune dysfunction
T6 215-244 tissue denotes ectopic endometrial fragments
T7 268-282 body_part denotes uterine cavity
T8 335-356 cell_type denotes leukocyte populations
T9 358-382 protein_family_or_group denotes steroid hormone receptor
T10 395-417 other_name denotes proliferative activity
T11 419-424 protein_molecule denotes bcl-2
T12 440-449 other_name denotes apoptosis
T13 490-495 multi_cell denotes women
T14 501-514 other_name denotes endometriosis
T15 518-529 other_name denotes adenomyosis
T16 557-572 other_name denotes menstrual cycle
T17 598-616 protein_family_or_group denotes oestrogen receptor
T18 629-634 protein_molecule denotes bcl-2
T19 666-676 cell_type denotes leukocytes
T20 691-698 tissue denotes ectopic
T21 713-732 tissue denotes eutopic endometrium
T22 736-749 other_name denotes endometriosis
T23 833-852 tissue denotes ectopic endometrium
T24 854-869 cell_type denotes Apoptotic cells
T25 911-921 tissue denotes endometria
T26 940-953 other_name denotes endometriosis
T27 955-974 tissue denotes adenomyotic lesions
T28 992-1016 protein_family_or_group denotes steroid hormone receptor
T29 1029-1051 other_name denotes proliferative activity
T30 1053-1058 protein_molecule denotes bcl-2
T31 1102-1121 tissue denotes eutopic endometrium
T32 1189-1205 cell_type denotes CD56+ CD16- eGLs
T33 1255-1274 tissue denotes eutopic endometrium
T34 1306-1331 other_name denotes immunomagnetic separation
T35 1346-1375 other_name denotes negligible cytotoxic activity
T36 1379-1383 cell_type denotes eGLs
T37 1418-1436 other_name denotes cytotoxic activity
T38 1440-1444 cell_type denotes eGLs
T39 1486-1501 other_name denotes menstrual cycle
T40 1563-1595 cell_type denotes CD56+ CD16+ natural killer cells
T41 1597-1601 cell_type denotes eGLs
T42 1607-1631 tissue denotes non-pregnant endometrium
T43 1661-1692 other_name denotes variable proliferative response
T44 1711-1724 protein_molecule denotes interleukin-2
T45 1759-1763 cell_type denotes eGLs
T46 1808-1827 tissue denotes eutopic endometrium
T47 1846-1867 tissue denotes endometriotic lesions
T48 1892-1903 cell_type denotes CD+8 T-cell
T49 1926-1944 protein_family_or_group denotes oestrogen receptor
T50 1949-1954 protein_molecule denotes bcl-2
T51 2033-2046 other_name denotes endometriosis

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 105-118 HP_0030127 denotes endometriosis
T2 501-514 HP_0030127 denotes endometriosis
T3 736-749 HP_0030127 denotes endometriosis
T4 940-953 HP_0030127 denotes endometriosis
T5 2033-2046 HP_0030127 denotes endometriosis

DisGeNET

Id Subject Object Predicate Lexical cue
T0 1949-1954 gene:596 denotes bcl-2
T1 2033-2046 disease:C0014175 denotes endometriosis
R1 T0 T1 associated_with bcl-2,endometriosis