PubMed:10023084
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/10023084","sourcedb":"PubMed","sourceid":"10023084","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/10023084","text":"Molecular cloning of cDNA encoding human Rab3D whose expression is upregulated with myeloid differentiation.\nTo identify genes expressed in myeloid differentiation, we isolated a cDNA fragment by differential display using RNA prepared from HT93A cells, a human cell line capable of differentiating into neutrophil and eosinophil lineages in response to retinoic acid (RA). Evaluation of the full-length clone isolated from an HT93A cDNA library showed that it encoded a 24 kDa protein comprised of several domains conserved in the Ras superfamily. Comparison of the deduced amino acid sequence of this clone with Rab proteins revealed that it had highest homology to a small GTP-binding protein, murine Rab3D. The mRNA expression of human Rab3D was upregulated in the course of myeloid differentiation, and it was preferentially expressed in granulocytes. These results suggest that human Rab3D may play a specific role in granulocytes, for example in exocytosis of neutrophil-specific granules or in degranulation of both eosinophils and basophils.","tracks":[{"project":"bionlp-st-gro-2013-development","denotations":[{"id":"T1","span":{"begin":21,"end":25},"obj":"DNA"},{"id":"T2","span":{"begin":35,"end":40},"obj":"Eukaryote"},{"id":"T3","span":{"begin":41,"end":46},"obj":"Protein"},{"id":"T6","span":{"begin":84,"end":91},"obj":"Cell"},{"id":"T8","span":{"begin":121,"end":126},"obj":"Gene"},{"id":"T10","span":{"begin":140,"end":147},"obj":"Cell"},{"id":"T12","span":{"begin":179,"end":192},"obj":"DNA"},{"id":"T13","span":{"begin":223,"end":226},"obj":"RNA"},{"id":"T14","span":{"begin":241,"end":252},"obj":"Cell"},{"id":"T15","span":{"begin":256,"end":261},"obj":"Eukaryote"},{"id":"T16","span":{"begin":262,"end":271},"obj":"Cell"},{"id":"T18","span":{"begin":304,"end":314},"obj":"Cell"},{"id":"T19","span":{"begin":319,"end":338},"obj":"Cell"},{"id":"T20","span":{"begin":354,"end":367},"obj":"Chemical"},{"id":"T21","span":{"begin":427,"end":432},"obj":"Cell"},{"id":"T22","span":{"begin":433,"end":445},"obj":"DNA"},{"id":"T23","span":{"begin":478,"end":485},"obj":"Protein"},{"id":"T24","span":{"begin":507,"end":514},"obj":"ProteinDomain"},{"id":"T25","span":{"begin":532,"end":535},"obj":"Protein"},{"id":"T26","span":{"begin":575,"end":585},"obj":"AminoAcid"},{"id":"T27","span":{"begin":614,"end":626},"obj":"Protein"},{"id":"T28","span":{"begin":676,"end":679},"obj":"Nucleotide"},{"id":"T30","span":{"begin":688,"end":695},"obj":"Protein"},{"id":"T31","span":{"begin":697,"end":703},"obj":"Eukaryote"},{"id":"T32","span":{"begin":704,"end":709},"obj":"Protein"},{"id":"T33","span":{"begin":715,"end":719},"obj":"MessengerRNA"},{"id":"T35","span":{"begin":734,"end":739},"obj":"Eukaryote"},{"id":"T36","span":{"begin":740,"end":745},"obj":"Protein"},{"id":"T38","span":{"begin":779,"end":786},"obj":"Cell"},{"id":"T41","span":{"begin":843,"end":855},"obj":"Cell"},{"id":"T42","span":{"begin":884,"end":889},"obj":"Eukaryote"},{"id":"T43","span":{"begin":890,"end":895},"obj":"Protein"},{"id":"T44","span":{"begin":924,"end":936},"obj":"Cell"},{"id":"T46","span":{"begin":967,"end":977},"obj":"Cell"},{"id":"T47","span":{"begin":987,"end":995},"obj":"CellComponent"},{"id":"T49","span":{"begin":1024,"end":1035},"obj":"Cell"},{"id":"T50","span":{"begin":1040,"end":1049},"obj":"Cell"},{"id":"T51","span":{"begin":196,"end":216},"obj":"ExperimentalMethod"},{"id":"E1","span":{"begin":53,"end":63},"obj":"GeneExpression"},{"id":"E2","span":{"begin":67,"end":78},"obj":"PositiveRegulationOfGeneExpression"},{"id":"E3","span":{"begin":92,"end":107},"obj":"CellDifferentiation"},{"id":"E4","span":{"begin":127,"end":136},"obj":"GeneExpression"},{"id":"E5","span":{"begin":148,"end":163},"obj":"CellDifferentiation"},{"id":"E6","span":{"begin":283,"end":298},"obj":"CellDifferentiation"},{"id":"E7","span":{"begin":680,"end":687},"obj":"Binding"},{"id":"E8","span":{"begin":720,"end":730},"obj":"TranscriptionOfGene"},{"id":"E9","span":{"begin":750,"end":761},"obj":"PositiveRegulationOfTranscriptionOfGene"},{"id":"E10","span":{"begin":787,"end":802},"obj":"CellDifferentiation"},{"id":"E11","span":{"begin":830,"end":839},"obj":"GeneExpression"},{"id":"E12","span":{"begin":953,"end":963},"obj":"Transport"},{"id":"E13","span":{"begin":1002,"end":1015},"obj":"CellularProcess"},{"id":"E14","span":{"begin":283,"end":298},"obj":"CellDifferentiation"}],"relations":[{"id":"R1","pred":"encodes","subj":"T1","obj":"T3"},{"id":"R2","pred":"fromSpecies","subj":"T3","obj":"T2"},{"id":"R3","pred":"locatedIn","subj":"E4","obj":"T10"},{"id":"R4","pred":"locatedIn","subj":"T13","obj":"T14"},{"id":"R5","pred":"fromSpecies","subj":"T16","obj":"T15"},{"id":"R6","pred":"locatedIn","subj":"T22","obj":"T21"},{"id":"R7","pred":"hasPart","subj":"T23","obj":"T24"},{"id":"R9","pred":"fromSpecies","subj":"T32","obj":"T31"},{"id":"R10","pred":"encodes","subj":"T33","obj":"T36"},{"id":"R11","pred":"fromSpecies","subj":"T36","obj":"T35"},{"id":"R12","pred":"locatedIn","subj":"E11","obj":"T41"},{"id":"R13","pred":"locatedIn","subj":"T43","obj":"T44"},{"id":"R14","pred":"fromSpecies","subj":"T43","obj":"T42"},{"id":"R15","pred":"locatedIn","subj":"T47","obj":"T46"},{"id":"R16","pred":"locatedIn","subj":"E13","obj":"T49"},{"id":"R17","pred":"locatedIn","subj":"E13","obj":"T50"},{"id":"R19","pred":"hasPatient","subj":"T3","obj":"E1"},{"id":"R20","pred":"hasAgent","subj":"E3","obj":"E2"},{"id":"R21","pred":"hasPatient","subj":"E1","obj":"E2"},{"id":"R22","pred":"hasPatient","subj":"T6","obj":"E3"},{"id":"R23","pred":"hasPatient","subj":"T8","obj":"E4"},{"id":"R24","pred":"hasPatient","subj":"T10","obj":"E5"},{"id":"R25","pred":"hasAgent","subj":"T20","obj":"E6"},{"id":"R26","pred":"hasPatient","subj":"T18","obj":"E6"},{"id":"R27","pred":"hasPatient","subj":"T28","obj":"E7"},{"id":"R28","pred":"hasPatient","subj":"T33","obj":"E8"},{"id":"R29","pred":"hasPatient","subj":"E8","obj":"E9"},{"id":"R30","pred":"hasPatient","subj":"T38","obj":"E10"},{"id":"R31","pred":"hasPatient","subj":"T36","obj":"E11"},{"id":"R32","pred":"hasPatient","subj":"T47","obj":"E12"},{"id":"R33","pred":"hasAgent","subj":"T20","obj":"E14"},{"id":"R34","pred":"hasPatient","subj":"T19","obj":"E14"}],"attributes":[{"subj":"T1","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T2","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T3","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T6","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T8","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T10","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T12","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T13","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T14","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T15","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T16","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T18","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T19","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T20","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T21","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T22","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T23","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T24","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T25","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T26","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T27","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T28","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T30","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T31","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T32","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T33","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T35","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T36","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T38","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T41","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T42","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T43","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T44","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T46","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T47","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T49","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T50","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T51","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E1","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E2","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E3","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E4","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E5","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E6","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E7","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E8","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E9","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E10","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E11","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E12","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E13","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E14","pred":"source","obj":"bionlp-st-gro-2013-development"}]},{"project":"NCBITAXON","denotations":[{"id":"T1","span":{"begin":35,"end":40},"obj":"OrganismTaxon"},{"id":"T2","span":{"begin":256,"end":261},"obj":"OrganismTaxon"},{"id":"T3","span":{"begin":734,"end":739},"obj":"OrganismTaxon"},{"id":"T4","span":{"begin":884,"end":889},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"9606"},{"id":"A2","pred":"db_id","subj":"T2","obj":"9606"},{"id":"A3","pred":"db_id","subj":"T3","obj":"9606"},{"id":"A4","pred":"db_id","subj":"T4","obj":"9606"},{"subj":"T1","pred":"source","obj":"NCBITAXON"},{"subj":"T2","pred":"source","obj":"NCBITAXON"},{"subj":"T3","pred":"source","obj":"NCBITAXON"},{"subj":"T4","pred":"source","obj":"NCBITAXON"}]},{"project":"Anatomy-UBERON","denotations":[{"id":"T1","span":{"begin":304,"end":314},"obj":"Body_part"},{"id":"T2","span":{"begin":319,"end":329},"obj":"Body_part"},{"id":"T3","span":{"begin":843,"end":855},"obj":"Body_part"},{"id":"T4","span":{"begin":924,"end":936},"obj":"Body_part"},{"id":"T5","span":{"begin":967,"end":977},"obj":"Body_part"},{"id":"T6","span":{"begin":1024,"end":1035},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL_0000775"},{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CL_0017502"},{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CL_0000094"},{"id":"A4","pred":"uberon_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CL_0000094"},{"id":"A5","pred":"uberon_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CL_0000775"},{"id":"A6","pred":"uberon_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/CL_0017502"},{"subj":"T1","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T2","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T3","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T4","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T5","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T6","pred":"source","obj":"Anatomy-UBERON"}]},{"project":"HP-phenotype","denotations":[{"id":"T1","span":{"begin":369,"end":371},"obj":"Phenotype"}],"attributes":[{"id":"A1","pred":"hp_id","subj":"T1","obj":"HP:0001370"},{"subj":"T1","pred":"source","obj":"HP-phenotype"}],"namespaces":[{"prefix":"HP","uri":"http://purl.obolibrary.org/obo/HP_"}]},{"project":"CL-cell","denotations":[{"id":"T1","span":{"begin":304,"end":314},"obj":"Cell"},{"id":"T2","span":{"begin":319,"end":329},"obj":"Cell"},{"id":"T3","span":{"begin":843,"end":855},"obj":"Cell"},{"id":"T4","span":{"begin":924,"end":936},"obj":"Cell"},{"id":"T5","span":{"begin":967,"end":977},"obj":"Cell"},{"id":"T6","span":{"begin":1024,"end":1035},"obj":"Cell"},{"id":"T7","span":{"begin":1040,"end":1049},"obj":"Cell"}],"attributes":[{"id":"A1","pred":"cl_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL:0000775"},{"id":"A2","pred":"cl_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CL:0000771"},{"id":"A3","pred":"cl_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CL:0000094"},{"id":"A4","pred":"cl_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CL:0000094"},{"id":"A5","pred":"cl_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CL:0000775"},{"id":"A6","pred":"cl_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/CL:0000771"},{"id":"A7","pred":"cl_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/CL:0000767"},{"subj":"T1","pred":"source","obj":"CL-cell"},{"subj":"T2","pred":"source","obj":"CL-cell"},{"subj":"T3","pred":"source","obj":"CL-cell"},{"subj":"T4","pred":"source","obj":"CL-cell"},{"subj":"T5","pred":"source","obj":"CL-cell"},{"subj":"T6","pred":"source","obj":"CL-cell"},{"subj":"T7","pred":"source","obj":"CL-cell"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"bionlp-st-gro-2013-development","color":"#a893ec","default":true},{"id":"NCBITAXON","color":"#97ec93"},{"id":"Anatomy-UBERON","color":"#ec93b1"},{"id":"HP-phenotype","color":"#93cbec"},{"id":"CL-cell","color":"#e5ec93"}]}]}}