PubMed:10022909 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/10022909","sourcedb":"PubMed","sourceid":"10022909","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/10022909","text":"Mammalian staufen is a double-stranded-RNA- and tubulin-binding protein which localizes to the rough endoplasmic reticulum.\nStaufen (Stau) is a double-stranded RNA (dsRNA)-binding protein involved in mRNA transport and localization in Drosophila. To understand the molecular mechanisms of mRNA transport in mammals, we cloned human (hStau) and mouse (mStau) staufen cDNAs. In humans, four transcripts arise by differential splicing of the Stau gene and code for two proteins with different N-terminal extremities. In vitro, hStau and mStau bind dsRNA via each of two full-length dsRNA-binding domains and tubulin via a region similar to the microtubule-binding domain of MAP-1B, suggesting that Stau cross-links cytoskeletal and RNA components. Immunofluorescent double labeling of transfected mammalian cells revealed that Stau is localized to the rough endoplasmic reticulum (RER), implicating this RNA-binding protein in mRNA targeting to the RER, perhaps via a multistep process involving microtubules. These results are the first demonstration of the association of an RNA-binding protein in addition to ribosomal proteins, with the RER, implicating this class of proteins in the transport of RNA to its site of translation.","tracks":[{"project":"PMID_GLOBAL","denotations":[{"id":"T1","span":{"begin":671,"end":674},"obj":"DiseaseOrPhenotypicFeature"}],"attributes":[{"id":"A1","pred":"mondo_id","subj":"T1","obj":"0012041"},{"subj":"T1","pred":"source","obj":"PMID_GLOBAL"}]},{"project":"bionlp-st-gro-2013-development","denotations":[{"id":"T1","span":{"begin":0,"end":9},"obj":"Eukaryote"},{"id":"T2","span":{"begin":10,"end":17},"obj":"Protein"},{"id":"T3","span":{"begin":23,"end":42},"obj":"RNA"},{"id":"T6","span":{"begin":48,"end":71},"obj":"Protein"},{"id":"T8","span":{"begin":95,"end":122},"obj":"CellComponent"},{"id":"T9","span":{"begin":124,"end":131},"obj":"Protein"},{"id":"T10","span":{"begin":133,"end":137},"obj":"Protein"},{"id":"T11","span":{"begin":144,"end":163},"obj":"RNA"},{"id":"T12","span":{"begin":165,"end":170},"obj":"RNA"},{"id":"T14","span":{"begin":180,"end":187},"obj":"Protein"},{"id":"T15","span":{"begin":200,"end":204},"obj":"MessengerRNA"},{"id":"T18","span":{"begin":235,"end":245},"obj":"Eukaryote"},{"id":"T19","span":{"begin":289,"end":293},"obj":"MessengerRNA"},{"id":"T21","span":{"begin":307,"end":314},"obj":"Eukaryote"},{"id":"T22","span":{"begin":326,"end":331},"obj":"Eukaryote"},{"id":"T23","span":{"begin":333,"end":338},"obj":"Protein"},{"id":"T24","span":{"begin":344,"end":349},"obj":"Eukaryote"},{"id":"T25","span":{"begin":351,"end":356},"obj":"Protein"},{"id":"T26","span":{"begin":358,"end":365},"obj":"Protein"},{"id":"T27","span":{"begin":366,"end":371},"obj":"DNA"},{"id":"T28","span":{"begin":376,"end":382},"obj":"Eukaryote"},{"id":"T29","span":{"begin":389,"end":400},"obj":"Transcript"},{"id":"T31","span":{"begin":439,"end":448},"obj":"Gene"},{"id":"T32","span":{"begin":466,"end":474},"obj":"Protein"},{"id":"T33","span":{"begin":524,"end":529},"obj":"Protein"},{"id":"T34","span":{"begin":534,"end":539},"obj":"Protein"},{"id":"T36","span":{"begin":545,"end":550},"obj":"RNA"},{"id":"T37","span":{"begin":579,"end":584},"obj":"RNA"},{"id":"T39","span":{"begin":593,"end":600},"obj":"ProteinDomain"},{"id":"T40","span":{"begin":605,"end":612},"obj":"Protein"},{"id":"T41","span":{"begin":641,"end":652},"obj":"CellComponent"},{"id":"T43","span":{"begin":661,"end":667},"obj":"ProteinDomain"},{"id":"T44","span":{"begin":671,"end":677},"obj":"Protein"},{"id":"T45","span":{"begin":695,"end":699},"obj":"Protein"},{"id":"T46","span":{"begin":712,"end":724},"obj":"CellComponent"},{"id":"T47","span":{"begin":729,"end":743},"obj":"RNA"},{"id":"T48","span":{"begin":804,"end":809},"obj":"Cell"},{"id":"T49","span":{"begin":824,"end":828},"obj":"Protein"},{"id":"T51","span":{"begin":849,"end":876},"obj":"CellComponent"},{"id":"T52","span":{"begin":878,"end":881},"obj":"CellComponent"},{"id":"T55","span":{"begin":901,"end":920},"obj":"Protein"},{"id":"T56","span":{"begin":924,"end":928},"obj":"MessengerRNA"},{"id":"T58","span":{"begin":946,"end":949},"obj":"CellComponent"},{"id":"T59","span":{"begin":993,"end":1005},"obj":"CellComponent"},{"id":"T62","span":{"begin":1074,"end":1093},"obj":"Protein"},{"id":"T63","span":{"begin":1109,"end":1118},"obj":"CellComponent"},{"id":"T64","span":{"begin":1119,"end":1127},"obj":"Protein"},{"id":"T65","span":{"begin":1138,"end":1141},"obj":"CellComponent"},{"id":"T66","span":{"begin":1169,"end":1177},"obj":"Protein"},{"id":"T68","span":{"begin":1198,"end":1201},"obj":"RNA"},{"id":"T70","span":{"begin":745,"end":778},"obj":"ExperimentalMethod"},{"id":"T4","span":{"begin":794,"end":803},"obj":"Eukaryote"},{"id":"E2","span":{"begin":78,"end":87},"obj":"Localization"},{"id":"E3","span":{"begin":172,"end":179},"obj":"BindingToRNA"},{"id":"E4","span":{"begin":205,"end":214},"obj":"Transport"},{"id":"E5","span":{"begin":219,"end":231},"obj":"Localization"},{"id":"E6","span":{"begin":294,"end":303},"obj":"Transport"},{"id":"E7","span":{"begin":410,"end":431},"obj":"Splicing"},{"id":"E8","span":{"begin":540,"end":544},"obj":"BindingToRNA"},{"id":"E9","span":{"begin":585,"end":592},"obj":"Binding"},{"id":"E10","span":{"begin":653,"end":660},"obj":"Binding"},{"id":"E11","span":{"begin":832,"end":841},"obj":"Localization"},{"id":"E13","span":{"begin":929,"end":938},"obj":"Transport"},{"id":"E15","span":{"begin":1185,"end":1194},"obj":"Transport"},{"id":"E16","span":{"begin":1217,"end":1228},"obj":"Translation"}],"relations":[{"id":"R1","pred":"fromSpecies","subj":"T2","obj":"T1"},{"id":"R2","pred":"fromSpecies","subj":"E5","obj":"T18"},{"id":"R3","pred":"fromSpecies","subj":"E6","obj":"T21"},{"id":"R8","pred":"hasPart","subj":"T33","obj":"T39"},{"id":"R9","pred":"hasPart","subj":"T34","obj":"T39"},{"id":"R10","pred":"hasPart","subj":"T44","obj":"T43"},{"id":"R11","pred":"locatedIn","subj":"E11","obj":"T51"},{"id":"R4","pred":"fromSpecies","subj":"T23","obj":"T22"},{"id":"R5","pred":"fromSpecies","subj":"T25","obj":"T24"},{"id":"R12","pred":"encodes","subj":"T31","obj":"T32"},{"id":"R6","pred":"fromSpecies","subj":"T29","obj":"T28"},{"id":"R7","pred":"locatedIn","subj":"T64","obj":"T63"},{"id":"R13","pred":"fromSpecies","subj":"T48","obj":"T4"},{"id":"R15","pred":"hasPatient","subj":"T11","obj":"E3"},{"id":"R16","pred":"hasPatient","subj":"T9","obj":"E3"},{"id":"R17","pred":"hasPatient","subj":"T15","obj":"E4"},{"id":"R18","pred":"hasPatient","subj":"T15","obj":"E5"},{"id":"R19","pred":"hasPatient","subj":"T19","obj":"E6"},{"id":"R20","pred":"hasPatient","subj":"T29","obj":"E7"},{"id":"R21","pred":"hasPatient","subj":"T36","obj":"E8"},{"id":"R22","pred":"hasPatient","subj":"T40","obj":"E8"},{"id":"R23","pred":"hasPatient","subj":"T34","obj":"E8"},{"id":"R24","pred":"hasPatient","subj":"T33","obj":"E8"},{"id":"R25","pred":"hasAgent","subj":"T39","obj":"E9"},{"id":"R26","pred":"hasPatient","subj":"T37","obj":"E9"},{"id":"R27","pred":"hasAgent","subj":"T43","obj":"E10"},{"id":"R28","pred":"hasPatient","subj":"T41","obj":"E10"},{"id":"R29","pred":"hasPatient","subj":"T49","obj":"E11"},{"id":"R30","pred":"hasPatient","subj":"T56","obj":"E13"},{"id":"R31","pred":"hasPatient","subj":"T68","obj":"E15"}],"attributes":[{"subj":"T1","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T2","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T3","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T6","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T8","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T9","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T10","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T11","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T12","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T14","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T15","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T18","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T19","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T21","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T22","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T23","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T24","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T25","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T26","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T27","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T28","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T29","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T31","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T32","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T33","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T34","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T36","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T37","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T39","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T40","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T41","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T43","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T44","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T45","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T46","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T47","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T48","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T49","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T51","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T52","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T55","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T56","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T58","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T59","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T62","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T63","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T64","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T65","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T66","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T68","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T70","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T4","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E2","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E3","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E4","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E5","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E6","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E7","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E8","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E9","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E10","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E11","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E13","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E15","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E16","pred":"source","obj":"bionlp-st-gro-2013-development"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"PMID_GLOBAL","color":"#ec93d5","default":true},{"id":"bionlp-st-gro-2013-development","color":"#93ece8"}]}]}}