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PMC:88885 / 8137-11598 JSONTXT

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Id Subject Object Predicate Lexical cue
T2105 0-16 NN denotes Characterization
T2106 17-19 IN denotes of
T2107 20-23 DT denotes the
T2108 50-57 NN denotes variant
T2109 24-30 NN denotes Mcoln1
T2110 31-42 JJ denotes alternative
T2111 43-49 NN denotes splice
T2112 57-237 sentence denotes In order to determine the coding sequence for the larger transcript, we searched the mouse EST database using each intron as well as the genomic sequence flanking the Mcoln1 gene.
T2113 58-60 IN denotes In
T2114 130-138 VBD denotes searched
T2115 61-66 NN denotes order
T2116 67-69 TO denotes to
T2117 70-79 VB denotes determine
T2118 80-83 DT denotes the
T2119 91-99 NN denotes sequence
T2120 84-90 VBG denotes coding
T2121 100-103 IN denotes for
T2122 104-107 DT denotes the
T2123 115-125 NN denotes transcript
T2124 108-114 JJR denotes larger
T2125 125-127 , denotes ,
T2126 127-129 PRP denotes we
T2127 139-142 DT denotes the
T2128 153-161 NN denotes database
T2129 143-148 NN denotes mouse
T2130 149-152 NN denotes EST
T2131 162-167 VBG denotes using
T2132 168-172 DT denotes each
T2133 173-179 NN denotes intron
T2134 180-182 RB denotes as
T2135 188-190 IN denotes as
T2136 183-187 RB denotes well
T2137 191-194 DT denotes the
T2138 203-211 NN denotes sequence
T2139 195-202 JJ denotes genomic
T2140 212-220 VBG denotes flanking
T2141 221-224 DT denotes the
T2142 232-236 NN denotes gene
T2143 225-231 NN denotes Mcoln1
T2144 236-237 . denotes .
T2145 237-378 sentence denotes Two ESTs were identified that contained sequence from intron 12 (GB No. AI430291 and AA874645), and the corresponding clones were sequenced.
T2146 238-241 CD denotes Two
T2147 242-246 NNS denotes ESTs
T2148 252-262 VBN denotes identified
T2149 247-251 VBD denotes were
T2150 263-267 WDT denotes that
T2151 268-277 VBD denotes contained
T2152 278-286 NN denotes sequence
T2153 287-291 IN denotes from
T2154 292-298 NN denotes intron
T2155 299-301 CD denotes 12
T2156 302-303 -LRB- denotes (
T2157 310-318 NN denotes AI430291
T2158 303-305 NN denotes GB
T2159 306-309 NN denotes No.
T2160 319-322 CC denotes and
T2161 323-331 NN denotes AA874645
T2162 331-332 -RRB- denotes )
T2163 332-334 , denotes ,
T2164 334-337 CC denotes and
T2165 338-341 DT denotes the
T2166 356-362 NNS denotes clones
T2167 342-355 JJ denotes corresponding
T2168 368-377 VBN denotes sequenced
T2169 363-367 VBD denotes were
T2170 377-378 . denotes .
T2171 378-533 sentence denotes Clone 408619 (ESTs: GB No. AI430291, AI429558) begins approximately 1.1 kb before exon 13 and continues through the exon and splices correctly to exon 14.
T2172 379-384 NN denotes Clone
T2173 426-432 VBZ denotes begins
T2174 385-391 CD denotes 408619
T2175 392-393 -LRB- denotes (
T2176 416-424 NN denotes AI429558
T2177 393-397 NNS denotes ESTs
T2178 397-399 : denotes :
T2179 399-401 NN denotes GB
T2180 402-405 NN denotes No.
T2181 406-414 NN denotes AI430291
T2182 414-416 , denotes ,
T2183 424-425 -RRB- denotes )
T2184 433-446 RB denotes approximately
T2185 447-450 CD denotes 1.1
T2186 451-453 NNS denotes kb
T2187 454-460 IN denotes before
T2188 461-465 NN denotes exon
T2189 466-468 CD denotes 13
T2190 469-472 CC denotes and
T2191 473-482 VBZ denotes continues
T2192 483-490 IN denotes through
T2193 491-494 DT denotes the
T2194 495-499 NN denotes exon
T2195 500-503 CC denotes and
T2196 504-511 VBZ denotes splices
T2197 512-521 RB denotes correctly
T2198 522-524 IN denotes to
T2199 525-529 NN denotes exon
T2200 530-532 CD denotes 14
T2201 532-533 . denotes .
T2202 533-637 sentence denotes Clone 1281641 (EST:GB No. AA874645) begins 175 bp before exon 13 and also splices correctly to exon 14.
T2203 534-539 NN denotes Clone
T2204 570-576 VBZ denotes begins
T2205 540-547 CD denotes 1281641
T2206 548-549 -LRB- denotes (
T2207 560-568 NN denotes AA874645
T2208 549-552 NN denotes EST
T2209 552-553 : denotes :
T2210 553-555 NN denotes GB
T2211 556-559 NN denotes No.
T2212 568-569 -RRB- denotes )
T2213 577-580 CD denotes 175
T2214 581-583 NNS denotes bp
T2215 584-590 IN denotes before
T2216 591-595 NN denotes exon
T2217 596-598 CD denotes 13
T2218 599-602 CC denotes and
T2219 603-607 RB denotes also
T2220 608-615 VBZ denotes splices
T2221 616-625 RB denotes correctly
T2222 626-628 IN denotes to
T2223 629-633 NN denotes exon
T2224 634-636 CD denotes 14
T2225 636-637 . denotes .
T2226 637-826 sentence denotes A mouse multiple tissue Northern was hybridized using a probe generated from the putative intron sequence in clone 408619 (Probe 2, Fig. 1B), which detected only the 4.4 kb band (Fig. 3C).
T2227 638-639 DT denotes A
T2228 662-670 NNP denotes Northern
T2229 640-645 NN denotes mouse
T2230 646-654 JJ denotes multiple
T2231 655-661 NN denotes tissue
T2232 675-685 VBN denotes hybridized
T2233 671-674 VBD denotes was
T2234 686-691 VBG denotes using
T2235 692-693 DT denotes a
T2236 694-699 NN denotes probe
T2237 700-709 VBN denotes generated
T2238 710-714 IN denotes from
T2239 715-718 DT denotes the
T2240 735-743 NN denotes sequence
T2241 719-727 JJ denotes putative
T2242 728-734 NN denotes intron
T2243 744-746 IN denotes in
T2244 747-752 NN denotes clone
T2245 753-759 CD denotes 408619
T2246 760-761 -LRB- denotes (
T2247 775-777 NN denotes 1B
T2248 761-766 NN denotes Probe
T2249 767-768 CD denotes 2
T2250 768-770 , denotes ,
T2251 770-774 NNP denotes Fig.
T2252 777-778 -RRB- denotes )
T2253 778-780 , denotes ,
T2254 780-785 WDT denotes which
T2255 786-794 VBD denotes detected
T2256 795-799 RB denotes only
T2257 811-815 NN denotes band
T2258 800-803 DT denotes the
T2259 804-807 CD denotes 4.4
T2260 808-810 NN denotes kb
T2261 816-817 -LRB- denotes (
T2262 822-824 NN denotes 3C
T2263 817-821 NN denotes Fig.
T2264 824-825 -RRB- denotes )
T2265 825-826 . denotes .
T2266 826-1048 sentence denotes In order to determine the sequence of the entire transcript, RT-PCR using primers in exons 10 and 11 paired with a primer in intron 12 was performed using BALB/c mouse brain total RNA and the resulting products sequenced.
T2267 827-829 IN denotes In
T2268 966-975 VBN denotes performed
T2269 830-835 NN denotes order
T2270 836-838 TO denotes to
T2271 839-848 VB denotes determine
T2272 849-852 DT denotes the
T2273 853-861 NN denotes sequence
T2274 862-864 IN denotes of
T2275 865-868 DT denotes the
T2276 876-886 NN denotes transcript
T2277 869-875 JJ denotes entire
T2278 886-888 , denotes ,
T2279 888-890 NN denotes RT
T2280 891-894 NN denotes PCR
T2281 890-891 HYPH denotes -
T2282 895-900 VBG denotes using
T2283 901-908 NNS denotes primers
T2284 909-911 IN denotes in
T2285 912-917 NNS denotes exons
T2286 918-920 CD denotes 10
T2287 921-924 CC denotes and
T2288 925-927 CD denotes 11
T2289 928-934 VBN denotes paired
T2290 935-939 IN denotes with
T2291 940-941 DT denotes a
T2292 942-948 NN denotes primer
T2293 949-951 IN denotes in
T2294 952-958 NN denotes intron
T2295 959-961 CD denotes 12
T2296 962-965 VBD denotes was
T2297 976-981 VBG denotes using
T2298 982-986 NN denotes BALB
T2299 987-988 NN denotes c
T2300 986-987 HYPH denotes /
T2301 989-994 NN denotes mouse
T2302 995-1000 NN denotes brain
T2303 1007-1010 NN denotes RNA
T2304 1001-1006 JJ denotes total
T2305 1011-1014 CC denotes and
T2306 1015-1018 DT denotes the
T2307 1029-1037 NNS denotes products
T2308 1019-1028 VBG denotes resulting
T2309 1038-1047 VBN denotes sequenced
T2310 1047-1048 . denotes .
T2311 1048-1170 sentence denotes These products show that the larger transcript is due to an alternative splice event that results in an expanded exon 13.
T2312 1049-1054 DT denotes These
T2313 1055-1063 NNS denotes products
T2314 1064-1068 VBP denotes show
T2315 1069-1073 IN denotes that
T2316 1096-1098 VBZ denotes is
T2317 1074-1077 DT denotes the
T2318 1085-1095 NN denotes transcript
T2319 1078-1084 JJR denotes larger
T2320 1099-1102 IN denotes due
T2321 1103-1105 IN denotes to
T2322 1106-1108 DT denotes an
T2323 1128-1133 NN denotes event
T2324 1109-1120 JJ denotes alternative
T2325 1121-1127 NN denotes splice
T2326 1134-1138 WDT denotes that
T2327 1139-1146 VBZ denotes results
T2328 1147-1149 IN denotes in
T2329 1150-1152 DT denotes an
T2330 1162-1166 NN denotes exon
T2331 1153-1161 VBN denotes expanded
T2332 1167-1169 CD denotes 13
T2333 1169-1170 . denotes .
T2334 1170-1292 sentence denotes Specifically, exon 12 splices at bp 436 of intron 12, creating a large 1614 bp exon 13 that splices correctly to exon 14.
T2335 1171-1183 RB denotes Specifically
T2336 1193-1200 VBZ denotes splices
T2337 1183-1185 , denotes ,
T2338 1185-1189 NN denotes exon
T2339 1190-1192 CD denotes 12
T2340 1201-1203 IN denotes at
T2341 1204-1206 NN denotes bp
T2342 1207-1210 CD denotes 436
T2343 1211-1213 IN denotes of
T2344 1214-1220 NN denotes intron
T2345 1221-1223 CD denotes 12
T2346 1223-1225 , denotes ,
T2347 1225-1233 VBG denotes creating
T2348 1234-1235 DT denotes a
T2349 1250-1254 NN denotes exon
T2350 1236-1241 JJ denotes large
T2351 1242-1246 CD denotes 1614
T2352 1247-1249 NN denotes bp
T2353 1255-1257 CD denotes 13
T2354 1258-1262 WDT denotes that
T2355 1263-1270 VBZ denotes splices
T2356 1271-1280 RB denotes correctly
T2357 1281-1283 IN denotes to
T2358 1284-1288 NN denotes exon
T2359 1289-1291 CD denotes 14
T2360 1291-1292 . denotes .
T2361 1292-1449 sentence denotes The open reading frame of this alternatively spliced transcript is 611 amino acids, 28 amino acids longer than the message encoded by the 2.4 kb transcript.
T2362 1293-1296 DT denotes The
T2363 1310-1315 NN denotes frame
T2364 1297-1301 JJ denotes open
T2365 1302-1309 NN denotes reading
T2366 1357-1359 VBZ denotes is
T2367 1316-1318 IN denotes of
T2368 1319-1323 DT denotes this
T2369 1346-1356 NN denotes transcript
T2370 1324-1337 RB denotes alternatively
T2371 1338-1345 VBN denotes spliced
T2372 1360-1363 CD denotes 611
T2373 1370-1375 NNS denotes acids
T2374 1364-1369 NN denotes amino
T2375 1375-1377 , denotes ,
T2376 1377-1379 CD denotes 28
T2377 1386-1391 NNS denotes acids
T2378 1380-1385 JJ denotes amino
T2379 1392-1398 JJR denotes longer
T2380 1399-1403 IN denotes than
T2381 1404-1407 DT denotes the
T2382 1408-1415 NN denotes message
T2383 1416-1423 VBN denotes encoded
T2384 1424-1426 IN denotes by
T2385 1427-1430 DT denotes the
T2386 1438-1448 NN denotes transcript
T2387 1431-1434 CD denotes 2.4
T2388 1435-1437 NN denotes kb
T2389 1448-1449 . denotes .
T2390 1449-1653 sentence denotes TMPred analysis predicts that isoform 2 encodes a protein identical in structure to Mcoln1, possessing 6 transmembrane domains and a channel pore, however the protein sequences diverge at amino acid 526.
T2391 1450-1456 VBN denotes TMPred
T2392 1457-1465 NN denotes analysis
T2393 1466-1474 VBZ denotes predicts
T2394 1627-1634 VBP denotes diverge
T2395 1475-1479 IN denotes that
T2396 1490-1497 VBZ denotes encodes
T2397 1480-1487 NN denotes isoform
T2398 1488-1489 CD denotes 2
T2399 1498-1499 DT denotes a
T2400 1500-1507 NN denotes protein
T2401 1508-1517 JJ denotes identical
T2402 1518-1520 IN denotes in
T2403 1521-1530 NN denotes structure
T2404 1531-1533 IN denotes to
T2405 1534-1540 NN denotes Mcoln1
T2406 1540-1542 , denotes ,
T2407 1542-1552 VBG denotes possessing
T2408 1553-1554 CD denotes 6
T2409 1569-1576 NNS denotes domains
T2410 1555-1568 NN denotes transmembrane
T2411 1577-1580 CC denotes and
T2412 1581-1582 DT denotes a
T2413 1591-1595 NN denotes pore
T2414 1583-1590 NN denotes channel
T2415 1595-1597 , denotes ,
T2416 1597-1604 RB denotes however
T2417 1605-1608 DT denotes the
T2418 1617-1626 NNS denotes sequences
T2419 1609-1616 NN denotes protein
T2420 1635-1637 IN denotes at
T2421 1638-1643 JJ denotes amino
T2422 1644-1648 NN denotes acid
T2423 1649-1652 CD denotes 526
T2424 1652-1653 . denotes .
T2425 1653-1843 sentence denotes The 55 amino acid C-terminal cytoplasmic tail encoded by the 2.4 kb transcript is completely different from the 86 amino acid tail encoded by the murine specific 4.4 kb transcript (Fig. 4).
T2426 1654-1657 DT denotes The
T2427 1695-1699 NN denotes tail
T2428 1658-1660 CD denotes 55
T2429 1667-1671 NN denotes acid
T2430 1661-1666 NN denotes amino
T2431 1672-1673 NN denotes C
T2432 1674-1682 JJ denotes terminal
T2433 1673-1674 HYPH denotes -
T2434 1683-1694 JJ denotes cytoplasmic
T2435 1733-1735 VBZ denotes is
T2436 1700-1707 VBN denotes encoded
T2437 1708-1710 IN denotes by
T2438 1711-1714 DT denotes the
T2439 1722-1732 NN denotes transcript
T2440 1715-1718 CD denotes 2.4
T2441 1719-1721 NN denotes kb
T2442 1736-1746 RB denotes completely
T2443 1747-1756 JJ denotes different
T2444 1757-1761 IN denotes from
T2445 1762-1765 DT denotes the
T2446 1780-1784 NN denotes tail
T2447 1766-1768 CD denotes 86
T2448 1775-1779 NN denotes acid
T2449 1769-1774 NN denotes amino
T2450 1785-1792 VBN denotes encoded
T2451 1793-1795 IN denotes by
T2452 1796-1799 DT denotes the
T2453 1823-1833 NN denotes transcript
T2454 1800-1806 NN denotes murine
T2455 1807-1815 JJ denotes specific
T2456 1816-1819 CD denotes 4.4
T2457 1820-1822 NN denotes kb
T2458 1834-1835 -LRB- denotes (
T2459 1835-1839 NN denotes Fig.
T2460 1840-1841 CD denotes 4
T2461 1841-1842 -RRB- denotes )
T2462 1842-1843 . denotes .
T2463 1843-2132 sentence denotes Clontech Mouse RNA Master Blots were hybridized with the exon 2 and intron 12 probes mentioned above in an attempt to determine if these two transcripts showed differences in expression patterns, however, there was no significant difference in the 22 tissues represented (data not shown).
T2464 1844-1852 NNP denotes Clontech
T2465 1870-1875 NNPS denotes Blots
T2466 1853-1858 NNP denotes Mouse
T2467 1859-1862 NNP denotes RNA
T2468 1863-1869 NNP denotes Master
T2469 1881-1891 VBN denotes hybridized
T2470 1876-1880 VBD denotes were
T2471 2055-2058 VBD denotes was
T2472 1892-1896 IN denotes with
T2473 1897-1900 DT denotes the
T2474 1922-1928 NNS denotes probes
T2475 1901-1905 NN denotes exon
T2476 1906-1907 CD denotes 2
T2477 1908-1911 CC denotes and
T2478 1912-1918 NN denotes intron
T2479 1919-1921 CD denotes 12
T2480 1929-1938 VBN denotes mentioned
T2481 1939-1944 RB denotes above
T2482 1945-1947 IN denotes in
T2483 1948-1950 DT denotes an
T2484 1951-1958 NN denotes attempt
T2485 1959-1961 TO denotes to
T2486 1962-1971 VB denotes determine
T2487 1972-1974 IN denotes if
T2488 1997-2003 VBD denotes showed
T2489 1975-1980 DT denotes these
T2490 1985-1996 NNS denotes transcripts
T2491 1981-1984 CD denotes two
T2492 2004-2015 NNS denotes differences
T2493 2016-2018 IN denotes in
T2494 2019-2029 NN denotes expression
T2495 2030-2038 NNS denotes patterns
T2496 2038-2040 , denotes ,
T2497 2040-2047 RB denotes however
T2498 2047-2049 , denotes ,
T2499 2049-2054 EX denotes there
T2500 2059-2061 DT denotes no
T2501 2074-2084 NN denotes difference
T2502 2062-2073 JJ denotes significant
T2503 2085-2087 IN denotes in
T2504 2088-2091 DT denotes the
T2505 2095-2102 NNS denotes tissues
T2506 2092-2094 CD denotes 22
T2507 2103-2114 VBN denotes represented
T2508 2115-2116 -LRB- denotes (
T2509 2125-2130 VBN denotes shown
T2510 2116-2120 NNS denotes data
T2511 2121-2124 RB denotes not
T2512 2130-2131 -RRB- denotes )
T2513 2131-2132 . denotes .
T2514 2132-2532 sentence denotes Figure 4 Peptide sequence comparison of the two alternatively spliced Mcoln1 isoforms. The green box surrounds the divergent c-terminal cytoplasmic tails. The blue lines indicate the transmembrane domains. Next, we directly compared the nucleotide and amino acid sequence of the alternatively spliced mouse transcript to the entire human MCOLN1 genomic sequence and found no significant similarity.
T2515 2340-2344 RB denotes Next
T2516 2358-2366 VBD denotes compared
T2517 2344-2346 , denotes ,
T2518 2346-2348 PRP denotes we
T2519 2349-2357 RB denotes directly
T2520 2367-2370 DT denotes the
T2521 2397-2405 NN denotes sequence
T2522 2371-2381 NN denotes nucleotide
T2523 2382-2385 CC denotes and
T2524 2386-2391 NN denotes amino
T2525 2392-2396 NN denotes acid
T2526 2406-2408 IN denotes of
T2527 2409-2412 DT denotes the
T2528 2441-2451 NN denotes transcript
T2529 2413-2426 RB denotes alternatively
T2530 2427-2434 VBN denotes spliced
T2531 2435-2440 NN denotes mouse
T2532 2452-2454 IN denotes to
T2533 2455-2458 DT denotes the
T2534 2487-2495 NN denotes sequence
T2535 2459-2465 JJ denotes entire
T2536 2466-2471 JJ denotes human
T2537 2472-2478 NN denotes MCOLN1
T2538 2479-2486 JJ denotes genomic
T2539 2496-2499 CC denotes and
T2540 2500-2505 VBD denotes found
T2541 2506-2508 DT denotes no
T2542 2521-2531 NN denotes similarity
T2543 2509-2520 JJ denotes significant
T2544 2531-2532 . denotes .
T2545 2532-2640 sentence denotes As mentioned previously, Northern blots performed with human MCOLN1 probes show only one 2.4 kb transcript.
T2546 2533-2535 IN denotes As
T2547 2536-2545 VBN denotes mentioned
T2548 2608-2612 VBP denotes show
T2549 2546-2556 RB denotes previously
T2550 2556-2558 , denotes ,
T2551 2558-2566 NNP denotes Northern
T2552 2567-2572 NNS denotes blots
T2553 2573-2582 VBN denotes performed
T2554 2583-2587 IN denotes with
T2555 2588-2593 JJ denotes human
T2556 2594-2600 NN denotes MCOLN1
T2557 2601-2607 NNS denotes probes
T2558 2613-2617 RB denotes only
T2559 2629-2639 NN denotes transcript
T2560 2618-2621 CD denotes one
T2561 2622-2625 CD denotes 2.4
T2562 2626-2628 NN denotes kb
T2563 2639-2640 . denotes .
T2564 2640-2780 sentence denotes In addition, we hybridized a human multiple tissue Northern and human Southern with a probe in human intron 12 that is adjacent to exon 13.
T2565 2641-2643 IN denotes In
T2566 2657-2667 VBD denotes hybridized
T2567 2644-2652 NN denotes addition
T2568 2652-2654 , denotes ,
T2569 2654-2656 PRP denotes we
T2570 2668-2669 DT denotes a
T2571 2692-2700 NNP denotes Northern
T2572 2670-2675 JJ denotes human
T2573 2676-2684 JJ denotes multiple
T2574 2685-2691 NN denotes tissue
T2575 2701-2704 CC denotes and
T2576 2705-2710 JJ denotes human
T2577 2711-2719 NNP denotes Southern
T2578 2720-2724 IN denotes with
T2579 2725-2726 DT denotes a
T2580 2727-2732 NN denotes probe
T2581 2733-2735 IN denotes in
T2582 2736-2741 JJ denotes human
T2583 2742-2748 NN denotes intron
T2584 2749-2751 CD denotes 12
T2585 2752-2756 WDT denotes that
T2586 2757-2759 VBZ denotes is
T2587 2760-2768 JJ denotes adjacent
T2588 2769-2771 IN denotes to
T2589 2772-2776 NN denotes exon
T2590 2777-2779 CD denotes 13
T2591 2779-2780 . denotes .
T2592 2780-2879 sentence denotes The probe was located in the region syntenic to that which encodes the alternate mouse transcript.
T2593 2781-2784 DT denotes The
T2594 2785-2790 NN denotes probe
T2595 2795-2802 VBN denotes located
T2596 2791-2794 VBD denotes was
T2597 2803-2805 IN denotes in
T2598 2806-2809 DT denotes the
T2599 2810-2816 NN denotes region
T2600 2817-2825 JJ denotes syntenic
T2601 2826-2828 IN denotes to
T2602 2829-2833 DT denotes that
T2603 2834-2839 WDT denotes which
T2604 2840-2847 VBZ denotes encodes
T2605 2848-2851 DT denotes the
T2606 2868-2878 NN denotes transcript
T2607 2852-2861 JJ denotes alternate
T2608 2862-2867 NN denotes mouse
T2609 2878-2879 . denotes .
T2610 2879-3051 sentence denotes Only the expected bands were detected on the Southern and no bands were detected on the Northern, confirming that this alternative transcript is specific to murine Mcoln1.
T2611 2880-2884 RB denotes Only
T2612 2898-2903 NNS denotes bands
T2613 2885-2888 DT denotes the
T2614 2889-2897 VBN denotes expected
T2615 2909-2917 VBN denotes detected
T2616 2904-2908 VBD denotes were
T2617 2918-2920 IN denotes on
T2618 2921-2924 DT denotes the
T2619 2925-2933 NNP denotes Southern
T2620 2934-2937 CC denotes and
T2621 2938-2940 DT denotes no
T2622 2941-2946 NNS denotes bands
T2623 2952-2960 VBN denotes detected
T2624 2947-2951 VBD denotes were
T2625 2961-2963 IN denotes on
T2626 2964-2967 DT denotes the
T2627 2968-2976 NNP denotes Northern
T2628 2976-2978 , denotes ,
T2629 2978-2988 VBG denotes confirming
T2630 2989-2993 IN denotes that
T2631 3022-3024 VBZ denotes is
T2632 2994-2998 DT denotes this
T2633 3011-3021 NN denotes transcript
T2634 2999-3010 JJ denotes alternative
T2635 3025-3033 JJ denotes specific
T2636 3034-3036 IN denotes to
T2637 3037-3043 JJ denotes murine
T2638 3044-3050 NN denotes Mcoln1
T2639 3050-3051 . denotes .
T2640 3051-3219 sentence denotes Recent BLASTP analysis of the alternate Mcoln1 transcript yields a match to a putative 145 amino acid anonymous protein (GB No. BAB25862) predicted from a RIKEN clone.
T2641 3052-3058 JJ denotes Recent
T2642 3066-3074 NN denotes analysis
T2643 3059-3065 NN denotes BLASTP
T2644 3110-3116 VBZ denotes yields
T2645 3075-3077 IN denotes of
T2646 3078-3081 DT denotes the
T2647 3099-3109 NN denotes transcript
T2648 3082-3091 JJ denotes alternate
T2649 3092-3098 NN denotes Mcoln1
T2650 3117-3118 DT denotes a
T2651 3119-3124 NN denotes match
T2652 3125-3127 IN denotes to
T2653 3128-3129 DT denotes a
T2654 3164-3171 NN denotes protein
T2655 3130-3138 JJ denotes putative
T2656 3139-3142 CD denotes 145
T2657 3149-3153 NN denotes acid
T2658 3143-3148 NN denotes amino
T2659 3154-3163 JJ denotes anonymous
T2660 3172-3173 -LRB- denotes (
T2661 3180-3188 NN denotes BAB25862
T2662 3173-3175 NN denotes GB
T2663 3176-3179 NN denotes No.
T2664 3188-3189 -RRB- denotes )
T2665 3190-3199 VBN denotes predicted
T2666 3200-3204 IN denotes from
T2667 3205-3206 DT denotes a
T2668 3213-3218 NN denotes clone
T2669 3207-3212 NN denotes RIKEN
T2670 3218-3219 . denotes .
T2671 3219-3461 sentence denotes It is obvious from our results, however, that the identification of this sequence as a full-length protein is incorrect since probes unique to the clone, as well as probes containing the Mcoln1 coding sequence, identify the same transcripts.
T2672 3220-3222 PRP denotes It
T2673 3223-3225 VBZ denotes is
T2674 3226-3233 JJ denotes obvious
T2675 3234-3238 IN denotes from
T2676 3239-3242 PRP$ denotes our
T2677 3243-3250 NNS denotes results
T2678 3250-3252 , denotes ,
T2679 3252-3259 RB denotes however
T2680 3259-3261 , denotes ,
T2681 3261-3265 IN denotes that
T2682 3327-3329 VBZ denotes is
T2683 3266-3269 DT denotes the
T2684 3270-3284 NN denotes identification
T2685 3285-3287 IN denotes of
T2686 3288-3292 DT denotes this
T2687 3293-3301 NN denotes sequence
T2688 3302-3304 IN denotes as
T2689 3305-3306 DT denotes a
T2690 3319-3326 NN denotes protein
T2691 3307-3311 JJ denotes full
T2692 3312-3318 NN denotes length
T2693 3311-3312 HYPH denotes -
T2694 3330-3339 JJ denotes incorrect
T2695 3340-3345 IN denotes since
T2696 3431-3439 VBP denotes identify
T2697 3346-3352 NNS denotes probes
T2698 3353-3359 JJ denotes unique
T2699 3360-3362 IN denotes to
T2700 3363-3366 DT denotes the
T2701 3367-3372 NN denotes clone
T2702 3372-3374 , denotes ,
T2703 3374-3376 RB denotes as
T2704 3382-3384 IN denotes as
T2705 3377-3381 RB denotes well
T2706 3385-3391 NNS denotes probes
T2707 3392-3402 VBG denotes containing
T2708 3403-3406 DT denotes the
T2709 3421-3429 NN denotes sequence
T2710 3407-3413 NN denotes Mcoln1
T2711 3414-3420 NN denotes coding
T2712 3429-3431 , denotes ,
T2713 3440-3443 DT denotes the
T2714 3449-3460 NNS denotes transcripts
T2715 3444-3448 JJ denotes same
T2716 3460-3461 . denotes .
T4631 2143-2150 NN denotes Peptide
T4632 2151-2159 NN denotes sequence
T4633 2160-2170 NN denotes comparison
T4634 2171-2173 IN denotes of
T4635 2174-2177 DT denotes the
T4636 2211-2219 NNS denotes isoforms
T4637 2178-2181 CD denotes two
T4638 2182-2195 RB denotes alternatively
T4639 2196-2203 VBN denotes spliced
T4640 2204-2210 NN denotes Mcoln1
T4641 2219-2220 . denotes .
T4642 2220-2288 sentence denotes The green box surrounds the divergent c-terminal cytoplasmic tails.
T4643 2221-2224 DT denotes The
T4644 2231-2234 NN denotes box
T4645 2225-2230 JJ denotes green
T4646 2235-2244 VBZ denotes surrounds
T4647 2245-2248 DT denotes the
T4648 2282-2287 NNS denotes tails
T4649 2249-2258 JJ denotes divergent
T4650 2259-2260 NN denotes c
T4651 2261-2269 JJ denotes terminal
T4652 2260-2261 HYPH denotes -
T4653 2270-2281 JJ denotes cytoplasmic
T4654 2287-2288 . denotes .
T4655 2288-2339 sentence denotes The blue lines indicate the transmembrane domains.
T4656 2289-2292 DT denotes The
T4657 2298-2303 NNS denotes lines
T4658 2293-2297 JJ denotes blue
T4659 2304-2312 VBP denotes indicate
T4660 2313-2316 DT denotes the
T4661 2331-2338 NNS denotes domains
T4662 2317-2330 NN denotes transmembrane
T4663 2338-2339 . denotes .
R1200 T2106 T2105 prep of,Characterization
R1201 T2107 T2108 det the,variant
R1202 T2108 T2106 pobj variant,of
R1203 T2109 T2108 nmod Mcoln1,variant
R1204 T2110 T2111 amod alternative,splice
R1205 T2111 T2108 compound splice,variant
R1206 T2113 T2114 prep In,searched
R1207 T2115 T2113 pobj order,In
R1208 T2116 T2117 aux to,determine
R1209 T2117 T2115 acl determine,order
R1210 T2118 T2119 det the,sequence
R1211 T2119 T2117 dobj sequence,determine
R1212 T2120 T2119 amod coding,sequence
R1213 T2121 T2119 prep for,sequence
R1214 T2122 T2123 det the,transcript
R1215 T2123 T2121 pobj transcript,for
R1216 T2124 T2123 amod larger,transcript
R1217 T2125 T2114 punct ", ",searched
R1218 T2126 T2114 nsubj we,searched
R1219 T2127 T2128 det the,database
R1220 T2128 T2114 dobj database,searched
R1221 T2129 T2130 compound mouse,EST
R1222 T2130 T2128 compound EST,database
R1223 T2131 T2114 advcl using,searched
R1224 T2132 T2133 det each,intron
R1225 T2133 T2131 dobj intron,using
R1226 T2134 T2135 advmod as,as
R1227 T2135 T2133 cc as,intron
R1228 T2136 T2135 advmod well,as
R1229 T2137 T2138 det the,sequence
R1230 T2138 T2133 conj sequence,intron
R1231 T2139 T2138 amod genomic,sequence
R1232 T2140 T2138 acl flanking,sequence
R1233 T2141 T2142 det the,gene
R1234 T2142 T2140 dobj gene,flanking
R1235 T2143 T2142 compound Mcoln1,gene
R1236 T2144 T2114 punct .,searched
R1237 T2146 T2147 nummod Two,ESTs
R1238 T2147 T2148 nsubjpass ESTs,identified
R1239 T2149 T2148 auxpass were,identified
R1240 T2150 T2151 dep that,contained
R1241 T2151 T2148 ccomp contained,identified
R1242 T2152 T2151 dobj sequence,contained
R1243 T2153 T2152 prep from,sequence
R1244 T2154 T2153 pobj intron,from
R1245 T2155 T2154 nummod 12,intron
R1246 T2156 T2157 punct (,AI430291
R1247 T2157 T2148 parataxis AI430291,identified
R1248 T2158 T2157 compound GB,AI430291
R1249 T2159 T2157 compound No.,AI430291
R1250 T2160 T2157 cc and,AI430291
R1251 T2161 T2157 conj AA874645,AI430291
R1252 T2162 T2157 punct ),AI430291
R1253 T2163 T2148 punct ", ",identified
R1254 T2164 T2148 cc and,identified
R1255 T2165 T2166 det the,clones
R1256 T2166 T2168 nsubjpass clones,sequenced
R1257 T2167 T2166 amod corresponding,clones
R1258 T2168 T2148 conj sequenced,identified
R1259 T2169 T2168 auxpass were,sequenced
R1260 T2170 T2168 punct .,sequenced
R1261 T2172 T2173 nsubj Clone,begins
R1262 T2174 T2172 nummod 408619,Clone
R1263 T2175 T2176 punct (,AI429558
R1264 T2176 T2172 parataxis AI429558,Clone
R1265 T2177 T2176 dep ESTs,AI429558
R1266 T2178 T2176 punct : ,AI429558
R1267 T2179 T2176 nmod GB,AI429558
R1268 T2180 T2176 nmod No.,AI429558
R1269 T2181 T2176 nmod AI430291,AI429558
R1270 T2182 T2176 punct ", ",AI429558
R1271 T2183 T2176 punct ),AI429558
R1272 T2184 T2185 advmod approximately,1.1
R1273 T2185 T2186 nummod 1.1,kb
R1274 T2186 T2187 npadvmod kb,before
R1275 T2187 T2173 prep before,begins
R1276 T2188 T2187 pobj exon,before
R1277 T2189 T2188 nummod 13,exon
R1278 T2190 T2173 cc and,begins
R1279 T2191 T2173 conj continues,begins
R1280 T2192 T2191 prep through,continues
R1281 T2193 T2194 det the,exon
R1282 T2194 T2192 pobj exon,through
R1283 T2195 T2191 cc and,continues
R1284 T2196 T2191 conj splices,continues
R1285 T2197 T2196 advmod correctly,splices
R1286 T2198 T2196 prep to,splices
R1287 T2199 T2198 pobj exon,to
R1288 T2200 T2199 nummod 14,exon
R1289 T2201 T2173 punct .,begins
R1290 T2203 T2204 nsubj Clone,begins
R1291 T2205 T2203 nummod 1281641,Clone
R1292 T2206 T2207 punct (,AA874645
R1293 T2207 T2203 parataxis AA874645,Clone
R1294 T2208 T2207 dep EST,AA874645
R1295 T2209 T2207 punct :,AA874645
R1296 T2210 T2207 compound GB,AA874645
R1297 T2211 T2207 compound No.,AA874645
R1298 T2212 T2207 punct ),AA874645
R1299 T2213 T2214 nummod 175,bp
R1300 T2214 T2215 npadvmod bp,before
R1301 T2215 T2204 prep before,begins
R1302 T2216 T2215 pobj exon,before
R1303 T2217 T2216 nummod 13,exon
R1304 T2218 T2204 cc and,begins
R1305 T2219 T2220 advmod also,splices
R1306 T2220 T2204 conj splices,begins
R1307 T2221 T2220 advmod correctly,splices
R1308 T2222 T2220 prep to,splices
R1309 T2223 T2222 pobj exon,to
R1310 T2224 T2223 nummod 14,exon
R1311 T2225 T2204 punct .,begins
R1312 T2227 T2228 det A,Northern
R1313 T2228 T2232 nsubjpass Northern,hybridized
R1314 T2229 T2228 nmod mouse,Northern
R1315 T2230 T2231 amod multiple,tissue
R1316 T2231 T2228 compound tissue,Northern
R1317 T2233 T2232 auxpass was,hybridized
R1318 T2234 T2232 advcl using,hybridized
R1319 T2235 T2236 det a,probe
R1320 T2236 T2234 dobj probe,using
R1321 T2237 T2236 acl generated,probe
R1322 T2238 T2237 prep from,generated
R1323 T2239 T2240 det the,sequence
R1324 T2240 T2238 pobj sequence,from
R1325 T2241 T2240 amod putative,sequence
R1326 T2242 T2240 compound intron,sequence
R1327 T2243 T2240 prep in,sequence
R1328 T2244 T2243 pobj clone,in
R1329 T2245 T2244 nummod 408619,clone
R1330 T2246 T2247 punct (,1B
R1331 T2247 T2236 parataxis 1B,probe
R1332 T2248 T2247 dep Probe,1B
R1333 T2249 T2248 nummod 2,Probe
R1334 T2250 T2247 punct ", ",1B
R1335 T2251 T2247 compound Fig.,1B
R1336 T2252 T2247 punct ),1B
R1337 T2253 T2236 punct ", ",probe
R1338 T2254 T2255 dep which,detected
R1339 T2255 T2236 relcl detected,probe
R1340 T2256 T2257 advmod only,band
R1341 T2257 T2255 dobj band,detected
R1342 T2258 T2257 det the,band
R1343 T2259 T2260 nummod 4.4,kb
R1344 T2260 T2257 compound kb,band
R1345 T2261 T2262 punct (,3C
R1346 T2262 T2255 parataxis 3C,detected
R1347 T2263 T2262 compound Fig.,3C
R1348 T2264 T2262 punct ),3C
R1349 T2265 T2232 punct .,hybridized
R1350 T2267 T2268 prep In,performed
R1351 T2269 T2267 pobj order,In
R1352 T2270 T2271 aux to,determine
R1353 T2271 T2269 acl determine,order
R1354 T2272 T2273 det the,sequence
R1355 T2273 T2271 dobj sequence,determine
R1356 T2274 T2273 prep of,sequence
R1357 T2275 T2276 det the,transcript
R1358 T2276 T2274 pobj transcript,of
R1359 T2277 T2276 amod entire,transcript
R1360 T2278 T2268 punct ", ",performed
R1361 T2279 T2280 compound RT,PCR
R1362 T2280 T2268 nsubjpass PCR,performed
R1363 T2281 T2280 punct -,PCR
R1364 T2282 T2280 acl using,PCR
R1365 T2283 T2282 dobj primers,using
R1366 T2284 T2283 prep in,primers
R1367 T2285 T2286 nmod exons,10
R1368 T2286 T2284 pobj 10,in
R1369 T2287 T2286 cc and,10
R1370 T2288 T2286 conj 11,10
R1371 T2289 T2283 acl paired,primers
R1372 T2290 T2289 prep with,paired
R1373 T2291 T2292 det a,primer
R1374 T2292 T2290 pobj primer,with
R1375 T2293 T2292 prep in,primer
R1376 T2294 T2293 pobj intron,in
R1377 T2295 T2294 nummod 12,intron
R1378 T2296 T2268 auxpass was,performed
R1379 T2297 T2268 advcl using,performed
R1380 T2298 T2299 nmod BALB,c
R1381 T2299 T2301 nmod c,mouse
R1382 T2300 T2299 punct /,c
R1383 T2301 T2302 nmod mouse,brain
R1384 T2302 T2303 nmod brain,RNA
R1385 T2303 T2297 dobj RNA,using
R1386 T2304 T2303 amod total,RNA
R1387 T2305 T2268 cc and,performed
R1388 T2306 T2307 det the,products
R1389 T2307 T2309 nsubj products,sequenced
R1390 T2308 T2307 amod resulting,products
R1391 T2309 T2268 conj sequenced,performed
R1392 T2310 T2268 punct .,performed
R1393 T2312 T2313 det These,products
R1394 T2313 T2314 nsubj products,show
R1395 T2315 T2316 mark that,is
R1396 T2316 T2314 ccomp is,show
R1397 T2317 T2318 det the,transcript
R1398 T2318 T2316 nsubj transcript,is
R1399 T2319 T2318 amod larger,transcript
R1400 T2320 T2316 prep due,is
R1401 T2321 T2320 pcomp to,due
R1402 T2322 T2323 det an,event
R1403 T2323 T2320 pobj event,due
R1404 T2324 T2323 amod alternative,event
R1405 T2325 T2323 compound splice,event
R1406 T2326 T2327 dep that,results
R1407 T2327 T2323 relcl results,event
R1408 T2328 T2327 prep in,results
R1409 T2329 T2330 det an,exon
R1410 T2330 T2328 pobj exon,in
R1411 T2331 T2330 amod expanded,exon
R1412 T2332 T2330 nummod 13,exon
R1413 T2333 T2314 punct .,show
R1414 T2335 T2336 advmod Specifically,splices
R1415 T2337 T2336 punct ", ",splices
R1416 T2338 T2336 nsubj exon,splices
R1417 T2339 T2338 nummod 12,exon
R1418 T2340 T2336 prep at,splices
R1419 T2341 T2340 pobj bp,at
R1420 T2342 T2341 nummod 436,bp
R1421 T2343 T2341 prep of,bp
R1422 T2344 T2343 pobj intron,of
R1423 T2345 T2344 nummod 12,intron
R1424 T2346 T2336 punct ", ",splices
R1425 T2347 T2336 advcl creating,splices
R1426 T2348 T2349 det a,exon
R1427 T2349 T2347 dobj exon,creating
R1428 T2350 T2349 amod large,exon
R1429 T2351 T2352 nummod 1614,bp
R1430 T2352 T2349 compound bp,exon
R1431 T2353 T2349 nummod 13,exon
R1432 T2354 T2355 dep that,splices
R1433 T2355 T2349 relcl splices,exon
R1434 T2356 T2355 advmod correctly,splices
R1435 T2357 T2355 prep to,splices
R1436 T2358 T2357 pobj exon,to
R1437 T2359 T2358 nummod 14,exon
R1438 T2360 T2336 punct .,splices
R1439 T2362 T2363 det The,frame
R1440 T2363 T2366 nsubj frame,is
R1441 T2364 T2363 amod open,frame
R1442 T2365 T2363 compound reading,frame
R1443 T2367 T2363 prep of,frame
R1444 T2368 T2369 det this,transcript
R1445 T2369 T2367 pobj transcript,of
R1446 T2370 T2371 advmod alternatively,spliced
R1447 T2371 T2369 amod spliced,transcript
R1448 T2372 T2373 nummod 611,acids
R1449 T2373 T2366 attr acids,is
R1450 T2374 T2373 compound amino,acids
R1451 T2375 T2373 punct ", ",acids
R1452 T2376 T2377 nummod 28,acids
R1453 T2377 T2379 npadvmod acids,longer
R1454 T2378 T2377 amod amino,acids
R1455 T2379 T2373 amod longer,acids
R1456 T2380 T2379 prep than,longer
R1457 T2381 T2382 det the,message
R1458 T2382 T2380 pobj message,than
R1459 T2383 T2382 acl encoded,message
R1460 T2384 T2383 agent by,encoded
R1461 T2385 T2386 det the,transcript
R1462 T2386 T2384 pobj transcript,by
R1463 T2387 T2388 nummod 2.4,kb
R1464 T2388 T2386 compound kb,transcript
R1465 T2389 T2366 punct .,is
R1466 T2391 T2392 amod TMPred,analysis
R1467 T2392 T2393 nsubj analysis,predicts
R1468 T2393 T2394 ccomp predicts,diverge
R1469 T2395 T2396 mark that,encodes
R1470 T2396 T2393 ccomp encodes,predicts
R1471 T2397 T2396 nsubj isoform,encodes
R1472 T2398 T2397 nummod 2,isoform
R1473 T2399 T2400 det a,protein
R1474 T2400 T2396 dobj protein,encodes
R1475 T2401 T2400 amod identical,protein
R1476 T2402 T2401 prep in,identical
R1477 T2403 T2402 pobj structure,in
R1478 T2404 T2401 prep to,identical
R1479 T2405 T2404 pobj Mcoln1,to
R1480 T2406 T2400 punct ", ",protein
R1481 T2407 T2400 acl possessing,protein
R1482 T2408 T2409 nummod 6,domains
R1483 T2409 T2407 dobj domains,possessing
R1484 T2410 T2409 compound transmembrane,domains
R1485 T2411 T2409 cc and,domains
R1486 T2412 T2413 det a,pore
R1487 T2413 T2409 conj pore,domains
R1488 T2414 T2413 compound channel,pore
R1489 T2415 T2394 punct ", ",diverge
R1490 T2416 T2394 advmod however,diverge
R1491 T2417 T2418 det the,sequences
R1492 T2418 T2394 nsubj sequences,diverge
R1493 T2419 T2418 compound protein,sequences
R1494 T2420 T2394 prep at,diverge
R1495 T2421 T2422 amod amino,acid
R1496 T2422 T2420 pobj acid,at
R1497 T2423 T2422 nummod 526,acid
R1498 T2424 T2394 punct .,diverge
R1499 T2426 T2427 det The,tail
R1500 T2427 T2435 nsubj tail,is
R1501 T2428 T2429 nummod 55,acid
R1502 T2429 T2427 nmod acid,tail
R1503 T2430 T2429 nmod amino,acid
R1504 T2431 T2432 npadvmod C,terminal
R1505 T2432 T2427 amod terminal,tail
R1506 T2433 T2432 punct -,terminal
R1507 T2434 T2427 amod cytoplasmic,tail
R1508 T2436 T2427 acl encoded,tail
R1509 T2437 T2436 agent by,encoded
R1510 T2438 T2439 det the,transcript
R1511 T2439 T2437 pobj transcript,by
R1512 T2440 T2441 nummod 2.4,kb
R1513 T2441 T2439 compound kb,transcript
R1514 T2442 T2443 advmod completely,different
R1515 T2443 T2435 acomp different,is
R1516 T2444 T2443 prep from,different
R1517 T2445 T2446 det the,tail
R1518 T2446 T2444 pobj tail,from
R1519 T2447 T2448 nummod 86,acid
R1520 T2448 T2446 compound acid,tail
R1521 T2449 T2448 compound amino,acid
R1522 T2450 T2446 acl encoded,tail
R1523 T2451 T2450 agent by,encoded
R1524 T2452 T2453 det the,transcript
R1525 T2453 T2451 pobj transcript,by
R1526 T2454 T2455 npadvmod murine,specific
R1527 T2455 T2453 amod specific,transcript
R1528 T2456 T2457 nummod 4.4,kb
R1529 T2457 T2453 compound kb,transcript
R1530 T2458 T2459 punct (,Fig.
R1531 T2459 T2435 parataxis Fig.,is
R1532 T2460 T2459 nummod 4,Fig.
R1533 T2461 T2459 punct ),Fig.
R1534 T2462 T2435 punct .,is
R1535 T2464 T2465 compound Clontech,Blots
R1536 T2465 T2469 nsubjpass Blots,hybridized
R1537 T2466 T2467 compound Mouse,RNA
R1538 T2467 T2465 compound RNA,Blots
R1539 T2468 T2465 compound Master,Blots
R1540 T2469 T2471 ccomp hybridized,was
R1541 T2470 T2469 auxpass were,hybridized
R1542 T2472 T2469 prep with,hybridized
R1543 T2473 T2474 det the,probes
R1544 T2474 T2472 pobj probes,with
R1545 T2475 T2474 nmod exon,probes
R1546 T2476 T2475 nummod 2,exon
R1547 T2477 T2475 cc and,exon
R1548 T2478 T2475 conj intron,exon
R1549 T2479 T2478 nummod 12,intron
R1579 T2509 T2471 parataxis shown,was
R1580 T2510 T2509 nsubj data,shown
R1581 T2511 T2509 neg not,shown
R1582 T2512 T2509 punct ),shown
R1583 T2513 T2471 punct .,was
R1584 T2515 T2516 advmod Next,compared
R1585 T2517 T2516 punct ", ",compared
R1586 T2518 T2516 nsubj we,compared
R1587 T2519 T2516 advmod directly,compared
R1588 T2520 T2521 det the,sequence
R1589 T2521 T2516 dobj sequence,compared
R1590 T2522 T2521 nmod nucleotide,sequence
R1591 T2523 T2522 cc and,nucleotide
R1592 T2524 T2525 compound amino,acid
R1593 T2525 T2522 conj acid,nucleotide
R1594 T2526 T2521 prep of,sequence
R1595 T2527 T2528 det the,transcript
R1596 T2528 T2526 pobj transcript,of
R1597 T2529 T2530 advmod alternatively,spliced
R1598 T2530 T2528 amod spliced,transcript
R1599 T2531 T2528 compound mouse,transcript
R1600 T2532 T2516 prep to,compared
R1601 T2533 T2534 det the,sequence
R1602 T2534 T2532 pobj sequence,to
R1603 T2535 T2534 amod entire,sequence
R1604 T2536 T2537 amod human,MCOLN1
R1605 T2537 T2534 nmod MCOLN1,sequence
R1606 T2538 T2534 amod genomic,sequence
R1607 T2539 T2516 cc and,compared
R1608 T2540 T2516 conj found,compared
R1609 T2541 T2542 det no,similarity
R1610 T2542 T2540 dobj similarity,found
R1611 T2543 T2542 amod significant,similarity
R1612 T2544 T2516 punct .,compared
R1613 T2546 T2547 mark As,mentioned
R1614 T2547 T2548 advcl mentioned,show
R1615 T2549 T2547 advmod previously,mentioned
R1616 T2550 T2548 punct ", ",show
R1617 T2551 T2552 compound Northern,blots
R1618 T2552 T2548 nsubj blots,show
R1619 T2553 T2552 acl performed,blots
R1620 T2554 T2553 prep with,performed
R1621 T2555 T2556 amod human,MCOLN1
R1622 T2556 T2557 compound MCOLN1,probes
R1623 T2557 T2554 pobj probes,with
R1624 T2558 T2559 advmod only,transcript
R1625 T2559 T2548 dobj transcript,show
R1626 T2560 T2559 nummod one,transcript
R1627 T2561 T2562 nummod 2.4,kb
R1628 T2562 T2559 compound kb,transcript
R1629 T2563 T2548 punct .,show
R1630 T2565 T2566 prep In,hybridized
R1631 T2567 T2565 pobj addition,In
R1632 T2568 T2566 punct ", ",hybridized
R1633 T2569 T2566 nsubj we,hybridized
R1634 T2570 T2571 det a,Northern
R1635 T2571 T2566 dobj Northern,hybridized
R1636 T2572 T2571 amod human,Northern
R1637 T2573 T2574 amod multiple,tissue
R1638 T2574 T2571 compound tissue,Northern
R1639 T2575 T2571 cc and,Northern
R1640 T2576 T2577 amod human,Southern
R1641 T2577 T2571 conj Southern,Northern
R1642 T2578 T2566 prep with,hybridized
R1643 T2579 T2580 det a,probe
R1644 T2580 T2578 pobj probe,with
R1645 T2581 T2580 prep in,probe
R1646 T2582 T2583 amod human,intron
R1647 T2583 T2581 pobj intron,in
R1648 T2584 T2583 nummod 12,intron
R1649 T2585 T2586 dep that,is
R1650 T2586 T2580 relcl is,probe
R1651 T2587 T2586 acomp adjacent,is
R1652 T2588 T2587 prep to,adjacent
R1653 T2589 T2588 pobj exon,to
R1654 T2590 T2589 nummod 13,exon
R1655 T2591 T2566 punct .,hybridized
R1656 T2593 T2594 det The,probe
R1657 T2594 T2595 nsubjpass probe,located
R1658 T2596 T2595 auxpass was,located
R1659 T2597 T2595 prep in,located
R1660 T2598 T2599 det the,region
R1661 T2599 T2597 pobj region,in
R1662 T2600 T2599 amod syntenic,region
R1663 T2601 T2600 prep to,syntenic
R1664 T2602 T2601 pobj that,to
R1665 T2603 T2604 dep which,encodes
R1666 T2604 T2602 relcl encodes,that
R1667 T2605 T2606 det the,transcript
R1668 T2606 T2604 dobj transcript,encodes
R1669 T2607 T2606 amod alternate,transcript
R1670 T2608 T2606 compound mouse,transcript
R1671 T2609 T2595 punct .,located
R1672 T2611 T2612 advmod Only,bands
R1673 T2612 T2615 nsubjpass bands,detected
R1674 T2613 T2612 det the,bands
R1675 T2614 T2612 amod expected,bands
R1676 T2616 T2615 auxpass were,detected
R1677 T2617 T2615 prep on,detected
R1678 T2618 T2619 det the,Southern
R1679 T2619 T2617 pobj Southern,on
R1680 T2620 T2615 cc and,detected
R1681 T2621 T2622 det no,bands
R1682 T2622 T2623 nsubjpass bands,detected
R1683 T2623 T2615 conj detected,detected
R1684 T2624 T2623 auxpass were,detected
R1685 T2625 T2623 prep on,detected
R1686 T2626 T2627 det the,Northern
R1687 T2627 T2625 pobj Northern,on
R1688 T2628 T2615 punct ", ",detected
R1689 T2629 T2615 advcl confirming,detected
R1690 T2630 T2631 mark that,is
R1691 T2631 T2629 ccomp is,confirming
R1692 T2632 T2633 det this,transcript
R1693 T2633 T2631 nsubj transcript,is
R1694 T2634 T2633 amod alternative,transcript
R1695 T2635 T2631 acomp specific,is
R1696 T2636 T2635 prep to,specific
R1697 T2637 T2638 amod murine,Mcoln1
R1698 T2638 T2636 pobj Mcoln1,to
R1699 T2639 T2615 punct .,detected
R1700 T2641 T2642 amod Recent,analysis
R1701 T2642 T2644 nsubj analysis,yields
R1702 T2643 T2642 compound BLASTP,analysis
R1703 T2645 T2642 prep of,analysis
R1704 T2646 T2647 det the,transcript
R1705 T2647 T2645 pobj transcript,of
R1706 T2648 T2647 amod alternate,transcript
R1707 T2649 T2647 compound Mcoln1,transcript
R1708 T2650 T2651 det a,match
R1709 T2651 T2644 dobj match,yields
R1710 T2652 T2651 prep to,match
R1711 T2653 T2654 det a,protein
R1712 T2654 T2652 pobj protein,to
R1713 T2655 T2654 amod putative,protein
R1714 T2656 T2657 nummod 145,acid
R1715 T2657 T2654 nmod acid,protein
R1716 T2658 T2657 nmod amino,acid
R1717 T2659 T2654 amod anonymous,protein
R1718 T2660 T2661 punct (,BAB25862
R1719 T2661 T2654 parataxis BAB25862,protein
R1720 T2662 T2661 compound GB,BAB25862
R1721 T2663 T2661 compound No.,BAB25862
R1722 T2664 T2661 punct ),BAB25862
R1723 T2665 T2654 acl predicted,protein
R1724 T2666 T2665 prep from,predicted
R1725 T2667 T2668 det a,clone
R1726 T2668 T2666 pobj clone,from
R1727 T2669 T2668 compound RIKEN,clone
R1728 T2670 T2644 punct .,yields
R1729 T2672 T2673 nsubj It,is
R1730 T2674 T2673 acomp obvious,is
R1731 T2675 T2673 prep from,is
R1732 T2676 T2677 poss our,results
R1733 T2677 T2675 pobj results,from
R1734 T2678 T2673 punct ", ",is
R1735 T2679 T2673 advmod however,is
R1736 T2680 T2673 punct ", ",is
R1737 T2681 T2682 mark that,is
R1738 T2682 T2673 ccomp is,is
R1739 T2683 T2684 det the,identification
R1740 T2684 T2682 nsubj identification,is
R1741 T2685 T2684 prep of,identification
R1742 T2686 T2687 det this,sequence
R1743 T2687 T2685 pobj sequence,of
R1744 T2688 T2684 prep as,identification
R1745 T2689 T2690 det a,protein
R1746 T2690 T2688 pobj protein,as
R1747 T2691 T2692 amod full,length
R1748 T2692 T2690 compound length,protein
R1749 T2693 T2692 punct -,length
R1750 T2694 T2682 acomp incorrect,is
R1751 T2695 T2696 mark since,identify
R1753 T2697 T2696 nsubj probes,identify
R1754 T2698 T2697 amod unique,probes
R1755 T2699 T2698 prep to,unique
R1756 T2700 T2701 det the,clone
R1757 T2701 T2699 pobj clone,to
R1758 T2702 T2697 punct ", ",probes
R1759 T2703 T2704 advmod as,as
R1760 T2704 T2697 cc as,probes
R1761 T2705 T2704 advmod well,as
R1762 T2706 T2697 conj probes,probes
R1763 T2707 T2706 acl containing,probes
R1764 T2708 T2709 det the,sequence
R2884 T4631 T4632 compound Peptide,sequence
R2885 T4632 T4633 compound sequence,comparison
R2886 T4634 T4633 prep of,comparison
R2887 T4635 T4636 det the,isoforms
R2888 T4636 T4634 pobj isoforms,of
R2889 T4637 T4636 nummod two,isoforms
R2890 T4638 T4639 advmod alternatively,spliced
R2891 T4639 T4636 amod spliced,isoforms
R2892 T4640 T4636 compound Mcoln1,isoforms
R2893 T4641 T4633 punct .,comparison
R2894 T4643 T4644 det The,box
R2895 T4644 T4646 nsubj box,surrounds
R2896 T4645 T4644 amod green,box
R2897 T4647 T4648 det the,tails
R2898 T4648 T4646 dobj tails,surrounds
R2899 T4649 T4648 amod divergent,tails
R2900 T4650 T4651 npadvmod c,terminal
R2901 T4651 T4648 amod terminal,tails
R2902 T4652 T4651 punct -,terminal
R2903 T4653 T4648 amod cytoplasmic,tails
R2904 T4654 T4646 punct .,surrounds
R2905 T4656 T4657 det The,lines
R2906 T4657 T4659 nsubj lines,indicate
R2907 T4658 T4657 amod blue,lines
R2908 T4660 T4661 det the,domains
R2909 T4661 T4659 dobj domains,indicate
R2910 T4662 T4661 compound transmembrane,domains
R2911 T4663 T4659 punct .,indicate
R1772 T2716 T2673 punct .,is
R1550 T2480 T2474 acl mentioned,probes
R1551 T2481 T2480 advmod above,mentioned
R1552 T2482 T2469 prep in,hybridized
R1553 T2483 T2484 det an,attempt
R1554 T2484 T2482 pobj attempt,in
R1555 T2485 T2486 aux to,determine
R1556 T2486 T2484 acl determine,attempt
R1557 T2487 T2488 mark if,showed
R1558 T2488 T2486 ccomp showed,determine
R1559 T2489 T2490 det these,transcripts
R1560 T2490 T2488 nsubj transcripts,showed
R1561 T2491 T2490 nummod two,transcripts
R1562 T2492 T2488 dobj differences,showed
R1563 T2493 T2492 prep in,differences
R1564 T2494 T2495 compound expression,patterns
R1565 T2495 T2493 pobj patterns,in
R1566 T2496 T2471 punct ", ",was
R1567 T2497 T2471 advmod however,was
R1568 T2498 T2471 punct ", ",was
R1569 T2499 T2471 expl there,was
R1570 T2500 T2501 det no,difference
R1571 T2501 T2471 attr difference,was
R1572 T2502 T2501 amod significant,difference
R1573 T2503 T2471 prep in,was
R1574 T2504 T2505 det the,tissues
R1575 T2505 T2503 pobj tissues,in
R1576 T2506 T2505 nummod 22,tissues
R1577 T2507 T2505 acl represented,tissues
R1578 T2508 T2509 punct (,shown
R1752 T2696 T2682 advcl identify,is
R1765 T2709 T2707 dobj sequence,containing
R1766 T2710 T2709 compound Mcoln1,sequence
R1767 T2711 T2709 compound coding,sequence
R1768 T2712 T2696 punct ", ",identify
R1769 T2713 T2714 det the,transcripts
R1770 T2714 T2696 dobj transcripts,identify
R1771 T2715 T2714 amod same,transcripts

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2012 24-30 PR:000010252 denotes Mcoln1
T2013 31-49 GO:0000380 denotes alternative splice
T2014 115-125 SO:0000673 denotes transcript
T2015 143-148 NCBITaxon:10088 denotes mouse
T2016 149-152 SO:0000345 denotes EST
T2017 173-179 SO:0000188 denotes intron
T2018 195-202 SO:0001026 denotes genomic
T2019 212-220 SO:0000357 denotes flanking
T2020 225-231 PR:000010252 denotes Mcoln1
T2021 232-236 SO:0000704 denotes gene
T2022 242-246 SO:0000345 denotes ESTs
T2023 292-298 SO:0000188 denotes intron
T2024 393-397 SO:0000345 denotes ESTs
T2025 461-465 SO:0000147 denotes exon
T2026 495-499 SO:0000147 denotes exon
T2027 504-511 GO:0008380 denotes splices
T2028 525-529 SO:0000147 denotes exon
T2029 549-552 SO:0000345 denotes EST
T2030 581-583 SO:0000028 denotes bp
T2031 591-595 SO:0000147 denotes exon
T2032 608-615 GO:0008380 denotes splices
T2033 629-633 SO:0000147 denotes exon
T2034 640-645 NCBITaxon:10088 denotes mouse
T2035 655-661 UBERON:0000479 denotes tissue
T2036 675-685 GO:0097617 denotes hybridized
T2037 728-734 SO:0000188 denotes intron
T2038 876-886 SO:0000673 denotes transcript
T2039 901-908 SO:0000112 denotes primers
T2040 912-917 SO:0000147 denotes exons
T2041 942-948 SO:0000112 denotes primer
T2042 952-958 SO:0000188 denotes intron
T2043 989-994 NCBITaxon:10088 denotes mouse
T2044 995-1000 UBERON:0000955 denotes brain
T2045 1085-1095 SO:0000673 denotes transcript
T2046 1109-1127 GO:0000380 denotes alternative splice
T2047 1162-1166 SO:0000147 denotes exon
T2048 1185-1189 SO:0000147 denotes exon
T2049 1193-1200 GO:0008380 denotes splices
T2050 1204-1206 SO:0000028 denotes bp
T2051 1214-1220 SO:0000188 denotes intron
T2052 1247-1249 SO:0000028 denotes bp
T2053 1250-1254 SO:0000147 denotes exon
T2054 1263-1270 GO:0008380 denotes splices
T2055 1284-1288 SO:0000147 denotes exon
T2056 1297-1315 SO:0000236 denotes open reading frame
T2057 1324-1345 GO:0000380 denotes alternatively spliced
T2058 1324-1356 SO:1001187 denotes alternatively spliced transcript
T2059 1408-1415 CHEBI:33695 denotes message
T2060 1438-1448 SO:0000673 denotes transcript
T2061 1480-1487 SO:0001060 denotes isoform
T2062 1534-1540 PR:000010252 denotes Mcoln1
T2063 1560-1568 GO:0016020 denotes membrane
T2064 1569-1576 SO:0000417 denotes domains
T2065 1683-1694 GO:0005737 denotes cytoplasmic
T2066 1722-1732 SO:0000673 denotes transcript
T2067 1800-1806 NCBITaxon:39107 denotes murine
T2068 1823-1833 SO:0000673 denotes transcript
T2069 1853-1858 NCBITaxon:10088 denotes Mouse
T2070 1881-1891 GO:0097617 denotes hybridized
T2071 1901-1905 SO:0000147 denotes exon
T2072 1912-1918 SO:0000188 denotes intron
T2073 1985-1996 SO:0000673 denotes transcripts
T2074 2019-2029 GO:0010467 denotes expression
T2075 2095-2102 UBERON:0000479 denotes tissues
T2076 2413-2434 GO:0000380 denotes alternatively spliced
T2077 2413-2434 _FRAGMENT denotes alternatively spliced
T2078 2441-2451 SO:1001187 denotes transcript
T2079 2435-2440 NCBITaxon:10088 denotes mouse
T2080 2466-2471 NCBITaxon:9606 denotes human
T2081 2472-2478 PR:000010252 denotes MCOLN1
T2082 2479-2486 SO:0001026 denotes genomic
T2083 2588-2593 NCBITaxon:9606 denotes human
T2084 2594-2600 PR:000010252 denotes MCOLN1
T2085 2629-2639 SO:0000673 denotes transcript
T2086 2657-2667 GO:0097617 denotes hybridized
T2087 2670-2675 NCBITaxon:9606 denotes human
T2088 2685-2691 UBERON:0000479 denotes tissue
T2089 2705-2710 NCBITaxon:9606 denotes human
T2090 2736-2741 NCBITaxon:9606 denotes human
T2091 2742-2748 SO:0000188 denotes intron
T2092 2772-2776 SO:0000147 denotes exon
T2093 2817-2825 SO:0000860 denotes syntenic
T2094 2852-2861 _FRAGMENT denotes alternate
T2095 2868-2878 SO:1001187 denotes transcript
T2096 2862-2867 NCBITaxon:10088 denotes mouse
T2097 2999-3021 SO:1001187 denotes alternative transcript
T2098 3037-3043 NCBITaxon:39107 denotes murine
T2099 3044-3050 PR:000010252 denotes Mcoln1
T2100 3082-3091 _FRAGMENT denotes alternate
T2101 3099-3109 SO:1001187 denotes transcript
T2102 3092-3098 PR:000010252 denotes Mcoln1
T2103 3407-3413 PR:000010252 denotes Mcoln1
T2104 3449-3460 SO:0000673 denotes transcripts
T4626 2182-2203 GO:0000380 denotes alternatively spliced
T4627 2204-2210 PR:000010252 denotes Mcoln1
T4628 2270-2281 GO:0005737 denotes cytoplasmic
T4629 2322-2330 GO:0016020 denotes membrane
T4630 2331-2338 SO:0000417 denotes domains
R1197 T2078 T2077 _lexicallyChainedTo transcript,alternatively spliced
R1198 T2095 T2094 _lexicallyChainedTo transcript,alternate
R1199 T2101 T2100 _lexicallyChainedTo transcript,alternate

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2717 24-30 PR_EXT:000010252 denotes Mcoln1
T2718 31-49 GO:0000380 denotes alternative splice
T2719 31-57 SO_EXT:alternative_splice_variant denotes alternative splice variant
T2720 84-99 SO_EXT:coding_sequence denotes coding sequence
T2721 115-125 SO_EXT:0000673 denotes transcript
T2722 143-148 NCBITaxon:10088 denotes mouse
T2723 149-152 SO_EXT:0000345 denotes EST
T2724 173-179 SO_EXT:0000188 denotes intron
T2725 195-202 SO_EXT:0001026 denotes genomic
T2726 203-211 SO_EXT:biological_sequence denotes sequence
T2727 212-220 SO:0000357 denotes flanking
T2728 225-231 PR_EXT:000010252 denotes Mcoln1
T2729 232-236 SO_EXT:0000704 denotes gene
T2730 242-246 SO_EXT:0000345 denotes ESTs
T2731 278-286 SO_EXT:biological_sequence denotes sequence
T2732 292-298 SO_EXT:0000188 denotes intron
T2733 356-362 SO_EXT:sequence_cloned_entity denotes clones
T2734 379-384 SO_EXT:sequence_cloned_entity denotes Clone
T2735 393-397 SO_EXT:0000345 denotes ESTs
T2736 452-453 CHEBI_SO_EXT:base denotes b
T2737 461-465 SO_EXT:0000147 denotes exon
T2738 495-499 SO_EXT:0000147 denotes exon
T2739 504-511 GO:0008380 denotes splices
T2740 525-529 SO_EXT:0000147 denotes exon
T2741 534-539 SO_EXT:sequence_cloned_entity denotes Clone
T2742 549-552 SO_EXT:0000345 denotes EST
T2743 581-583 SO_EXT:0000028 denotes bp
T2744 591-595 SO_EXT:0000147 denotes exon
T2745 608-615 GO:0008380 denotes splices
T2746 629-633 SO_EXT:0000147 denotes exon
T2747 640-645 NCBITaxon:10088 denotes mouse
T2748 655-661 UBERON:0000479 denotes tissue
T2749 675-685 GO:0097617 denotes hybridized
T2750 694-699 CHEBI_SO_EXT:molecular_probe denotes probe
T2751 728-734 SO_EXT:0000188 denotes intron
T2752 735-743 SO_EXT:biological_sequence denotes sequence
T2753 747-752 SO_EXT:sequence_cloned_entity denotes clone
T2754 761-766 CHEBI_SO_EXT:molecular_probe denotes Probe
T2755 809-810 CHEBI_SO_EXT:base denotes b
T2756 853-861 SO_EXT:biological_sequence denotes sequence
T2757 876-886 SO_EXT:0000673 denotes transcript
T2758 888-890 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T2759 901-908 SO_EXT:0000112 denotes primers
T2760 912-917 SO_EXT:0000147 denotes exons
T2761 942-948 SO_EXT:0000112 denotes primer
T2762 952-958 SO_EXT:0000188 denotes intron
T2763 989-994 NCBITaxon:10088 denotes mouse
T2764 995-1000 UBERON:0000955 denotes brain
T2765 1007-1010 CHEBI_SO_EXT:RNA denotes RNA
T2766 1085-1095 SO_EXT:0000673 denotes transcript
T2767 1109-1127 GO:0000380 denotes alternative splice
T2768 1162-1166 SO_EXT:0000147 denotes exon
T2769 1185-1189 SO_EXT:0000147 denotes exon
T2770 1193-1200 GO:0008380 denotes splices
T2771 1204-1206 SO_EXT:0000028 denotes bp
T2772 1214-1220 SO_EXT:0000188 denotes intron
T2773 1247-1249 SO_EXT:0000028 denotes bp
T2774 1250-1254 SO_EXT:0000147 denotes exon
T2775 1263-1270 GO:0008380 denotes splices
T2776 1284-1288 SO_EXT:0000147 denotes exon
T2777 1297-1315 SO_EXT:0000236 denotes open reading frame
T2778 1324-1345 GO:0000380 denotes alternatively spliced
T2779 1324-1356 SO_EXT:1001187 denotes alternatively spliced transcript
T2780 1364-1375 CHEBI_SO_EXT:amino_acid denotes amino acids
T2781 1380-1391 CHEBI_SO_EXT:amino_acid denotes amino acids
T2782 1408-1415 CHEBI_SO_EXT:mRNA denotes message
T2783 1408-1415 CHEBI:33695 denotes message
T2784 1416-1423 SO_EXT:sequence_coding_function denotes encoded
T2785 1436-1437 CHEBI_SO_EXT:base denotes b
T2786 1438-1448 SO_EXT:0000673 denotes transcript
T2787 1480-1487 SO_EXT:0001060 denotes isoform
T2788 1490-1497 SO_EXT:sequence_coding_function denotes encodes
T2789 1500-1507 CHEBI_PR_EXT:protein denotes protein
T2790 1534-1540 PR_EXT:000010252 denotes Mcoln1
T2791 1560-1568 GO:0016020 denotes membrane
T2792 1569-1576 SO_EXT:0000417 denotes domains
T2793 1583-1595 GO_EXT:0015267 denotes channel pore
T2794 1609-1616 CHEBI_PR_EXT:protein denotes protein
T2795 1617-1626 SO_EXT:biological_sequence denotes sequences
T2796 1638-1648 CHEBI_SO_EXT:amino_acid denotes amino acid
T2807 1823-1833 SO_EXT:0000673 denotes transcript
T2808 1853-1858 NCBITaxon:10088 denotes Mouse
T2809 1859-1862 CHEBI_SO_EXT:RNA denotes RNA
T2810 1881-1891 GO:0097617 denotes hybridized
T2811 1901-1905 SO_EXT:0000147 denotes exon
T2812 1912-1918 SO_EXT:0000188 denotes intron
T2813 1922-1928 CHEBI_SO_EXT:molecular_probe denotes probes
T2814 1985-1996 SO_EXT:0000673 denotes transcripts
T2815 2019-2029 GO:0010467 denotes expression
T2816 2095-2102 UBERON:0000479 denotes tissues
T2817 2371-2381 CHEBI_SO_EXT:nucleotide denotes nucleotide
T2818 2386-2396 CHEBI_SO_EXT:amino_acid denotes amino acid
T2819 2397-2405 SO_EXT:biological_sequence denotes sequence
T2820 2413-2434 GO:0000380 denotes alternatively spliced
T2821 2413-2434 _FRAGMENT denotes alternatively spliced
T2822 2441-2451 SO_EXT:1001187 denotes transcript
T2823 2435-2440 NCBITaxon:10088 denotes mouse
T2824 2466-2471 NCBITaxon:9606 denotes human
T2825 2472-2478 PR_EXT:000010252 denotes MCOLN1
T2826 2479-2486 SO_EXT:0001026 denotes genomic
T2827 2487-2495 SO_EXT:biological_sequence denotes sequence
T2828 2588-2593 NCBITaxon:9606 denotes human
T2829 2594-2600 PR_EXT:000010252 denotes MCOLN1
T2830 2601-2607 CHEBI_SO_EXT:molecular_probe denotes probes
T2831 2627-2628 CHEBI_SO_EXT:base denotes b
T2832 2629-2639 SO_EXT:0000673 denotes transcript
T2833 2657-2667 GO:0097617 denotes hybridized
T2834 2670-2675 NCBITaxon:9606 denotes human
T2835 2685-2691 UBERON:0000479 denotes tissue
T2836 2705-2710 NCBITaxon:9606 denotes human
T2837 2727-2732 CHEBI_SO_EXT:molecular_probe denotes probe
T2838 2736-2741 NCBITaxon:9606 denotes human
T2839 2742-2748 SO_EXT:0000188 denotes intron
T2840 2772-2776 SO_EXT:0000147 denotes exon
T2841 2785-2790 CHEBI_SO_EXT:molecular_probe denotes probe
T2842 2817-2825 SO:0000860 denotes syntenic
T2843 2840-2847 SO_EXT:sequence_coding_function denotes encodes
T2844 2852-2861 _FRAGMENT denotes alternate
T2845 2868-2878 SO_EXT:1001187 denotes transcript
T2846 2862-2867 NCBITaxon:10088 denotes mouse
T2847 2999-3021 SO_EXT:1001187 denotes alternative transcript
T2848 3037-3043 NCBITaxon:39107 denotes murine
T2849 3044-3050 PR_EXT:000010252 denotes Mcoln1
T2850 3082-3091 _FRAGMENT denotes alternate
T2851 3099-3109 SO_EXT:1001187 denotes transcript
T2852 3092-3098 PR_EXT:000010252 denotes Mcoln1
T2853 3143-3153 CHEBI_SO_EXT:amino_acid denotes amino acid
T2854 3164-3171 CHEBI_PR_EXT:protein denotes protein
T2855 3213-3218 SO_EXT:sequence_cloned_entity denotes clone
T2856 3293-3301 SO_EXT:biological_sequence denotes sequence
T2857 3319-3326 CHEBI_PR_EXT:protein denotes protein
T2858 3346-3352 CHEBI_SO_EXT:molecular_probe denotes probes
T2859 3367-3372 SO_EXT:sequence_cloned_entity denotes clone
T2860 3385-3391 CHEBI_SO_EXT:molecular_probe denotes probes
T2861 3407-3413 PR_EXT:000010252 denotes Mcoln1
T2862 3414-3429 SO_EXT:coding_sequence denotes coding sequence
T2863 3449-3460 SO_EXT:0000673 denotes transcripts
T4664 2143-2150 CHEBI_SO_EXT:peptide_or_peptide_region denotes Peptide
T4665 2151-2159 SO_EXT:biological_sequence denotes sequence
T4666 2182-2203 GO:0000380 denotes alternatively spliced
T4667 2182-2203 _FRAGMENT denotes alternatively spliced
T4668 2211-2219 SO_EXT:alternative_splice_variant denotes isoforms
T4669 2204-2210 PR_EXT:000010252 denotes Mcoln1
T4670 2259-2269 CHEBI_SO_EXT:C_terminus_or_C_terminal_region denotes c-terminal
T4671 2270-2281 GO:0005737 denotes cytoplasmic
T4672 2322-2330 GO:0016020 denotes membrane
T4673 2331-2338 SO_EXT:0000417 denotes domains
T2797 1661-1671 CHEBI_SO_EXT:amino_acid denotes amino acid
T2798 1672-1682 CHEBI_SO_EXT:C_terminus_or_C_terminal_region denotes C-terminal
T2799 1683-1694 GO:0005737 denotes cytoplasmic
T2800 1700-1707 SO_EXT:sequence_coding_function denotes encoded
T2801 1720-1721 CHEBI_SO_EXT:base denotes b
T2802 1722-1732 SO_EXT:0000673 denotes transcript
T2803 1769-1779 CHEBI_SO_EXT:amino_acid denotes amino acid
T2804 1785-1792 SO_EXT:sequence_coding_function denotes encoded
T2805 1800-1806 NCBITaxon:39107 denotes murine
T2806 1821-1822 CHEBI_SO_EXT:base denotes b
R2912 T4668 T4667 _lexicallyChainedTo isoforms,alternatively spliced
R1773 T2822 T2821 _lexicallyChainedTo transcript,alternatively spliced
R1774 T2845 T2844 _lexicallyChainedTo transcript,alternate
R1775 T2851 T2850 _lexicallyChainedTo transcript,alternate