> top > docs > PMC:88885 > spans > 4124-4841 > annotations

PMC:88885 / 4124-4841 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T4216 0-8 JJ denotes Physical
T4217 24-27 NN denotes map
T4218 9-12 CC denotes and
T4219 13-23 NN denotes transcript
T4220 28-30 IN denotes of
T4221 31-34 DT denotes the
T4222 47-53 NN denotes region
T4223 35-41 NN denotes Mcoln1
T4224 42-46 NN denotes gene
T4225 53-54 . denotes .
T4226 54-188 sentence denotes (A) Physical map showing a 590 kb segment of mouse chromosome 8 syntenous to human chromosome 19, anchored by the genes Insr and Nte.
T4227 55-56 -LRB- denotes (
T4228 56-57 LS denotes A
T4229 68-71 NN denotes map
T4230 57-58 -RRB- denotes )
T4231 59-67 JJ denotes Physical
T4232 72-79 VBG denotes showing
T4233 80-81 DT denotes a
T4234 89-96 NN denotes segment
T4235 82-85 CD denotes 590
T4236 86-88 NN denotes kb
T4237 97-99 IN denotes of
T4238 100-105 NN denotes mouse
T4239 106-116 NN denotes chromosome
T4240 117-118 CD denotes 8
T4241 119-128 JJ denotes syntenous
T4242 129-131 IN denotes to
T4243 132-137 JJ denotes human
T4244 138-148 NN denotes chromosome
T4245 149-151 CD denotes 19
T4246 151-153 , denotes ,
T4247 153-161 VBN denotes anchored
T4248 162-164 IN denotes by
T4249 165-168 DT denotes the
T4250 175-179 NNP denotes Insr
T4251 169-174 NNS denotes genes
T4252 180-183 CC denotes and
T4253 184-187 NNP denotes Nte
T4254 187-188 . denotes .
T4255 188-308 sentence denotes The region is covered by three BACs: RPCI-23_334D24 (AC087153), RPCI-23_312B8 (AC087150), and RPCI-23_387H4 (AC079544).
T4256 189-192 DT denotes The
T4257 193-199 NN denotes region
T4258 203-210 VBN denotes covered
T4259 200-202 VBZ denotes is
T4260 211-213 IN denotes by
T4261 214-219 CD denotes three
T4262 220-224 NNS denotes BACs
T4263 224-226 : denotes :
T4264 226-230 NN denotes RPCI
T4265 231-240 NN denotes 23_334D24
T4266 230-231 HYPH denotes -
T4267 241-242 -LRB- denotes (
T4268 242-250 NN denotes AC087153
T4269 250-251 -RRB- denotes )
T4270 251-253 , denotes ,
T4271 253-257 NN denotes RPCI
T4272 258-266 NN denotes 23_312B8
T4273 257-258 HYPH denotes -
T4274 267-268 -LRB- denotes (
T4275 268-276 NN denotes AC087150
T4276 276-277 -RRB- denotes )
T4277 277-279 , denotes ,
T4278 279-282 CC denotes and
T4279 283-287 NN denotes RPCI
T4280 288-296 NN denotes 23_387H4
T4281 287-288 HYPH denotes -
T4282 297-298 -LRB- denotes (
T4283 298-306 NN denotes AC079544
T4284 306-307 -RRB- denotes )
T4285 307-308 . denotes .
T4286 308-425 sentence denotes (B) The transcript map of Mcoln1 shows 14 exons, and the locations of the probes used in this study are illustrated.
T4287 309-310 -LRB- denotes (
T4288 310-311 LS denotes B
T4289 342-347 VBZ denotes shows
T4290 311-312 -RRB- denotes )
T4291 313-316 DT denotes The
T4292 328-331 NN denotes map
T4293 317-327 NN denotes transcript
T4294 332-334 IN denotes of
T4295 335-341 NN denotes Mcoln1
T4296 348-350 CD denotes 14
T4297 351-356 NNS denotes exons
T4298 356-358 , denotes ,
T4299 358-361 CC denotes and
T4300 362-365 DT denotes the
T4301 366-375 NNS denotes locations
T4302 413-424 VBN denotes illustrated
T4303 376-378 IN denotes of
T4304 379-382 DT denotes the
T4305 383-389 NNS denotes probes
T4306 390-394 VBN denotes used
T4307 395-397 IN denotes in
T4308 398-402 DT denotes this
T4309 403-408 NN denotes study
T4310 409-412 VBP denotes are
T4311 424-425 . denotes .
T4312 425-519 sentence denotes The map also shows the expanded exon 13 in the alternatively spliced transcript (hashed box).
T4313 426-429 DT denotes The
T4314 430-433 NN denotes map
T4315 439-444 VBZ denotes shows
T4316 434-438 RB denotes also
T4317 445-448 DT denotes the
T4318 458-462 NN denotes exon
T4319 449-457 VBN denotes expanded
T4320 463-465 CD denotes 13
T4321 466-468 IN denotes in
T4322 469-472 DT denotes the
T4323 495-505 NN denotes transcript
T4324 473-486 RB denotes alternatively
T4325 487-494 VBN denotes spliced
T4326 506-507 -LRB- denotes (
T4327 514-517 NN denotes box
T4328 507-513 VBN denotes hashed
T4329 517-518 -RRB- denotes )
T4330 518-519 . denotes .
T4331 519-603 sentence denotes UniGene cluster Mm.39099 is the homologue of the human zinc finger gene (AC001252).
T4332 520-527 NN denotes UniGene
T4333 536-544 NN denotes Mm.39099
T4334 528-535 NN denotes cluster
T4335 545-547 VBZ denotes is
T4336 548-551 DT denotes the
T4337 552-561 NN denotes homologue
T4338 562-564 IN denotes of
T4339 565-568 DT denotes the
T4340 587-591 NN denotes gene
T4341 569-574 JJ denotes human
T4342 575-579 NN denotes zinc
T4343 580-586 NN denotes finger
T4344 592-593 -LRB- denotes (
T4345 593-601 NN denotes AC001252
T4346 601-602 -RRB- denotes )
T4347 602-603 . denotes .
T4348 603-717 sentence denotes It should be noted that the scale of the transcript map is in reference to the 201 kb scale of BAC RPCI-23_387H4.
T4349 604-606 PRP denotes It
T4350 617-622 VBN denotes noted
T4351 607-613 MD denotes should
T4352 614-616 VB denotes be
T4353 623-627 IN denotes that
T4354 660-662 VBZ denotes is
T4355 628-631 DT denotes the
T4356 632-637 NN denotes scale
T4357 638-640 IN denotes of
T4358 641-644 DT denotes the
T4359 656-659 NN denotes map
T4360 645-655 NN denotes transcript
T4361 663-665 IN denotes in
T4362 666-675 NN denotes reference
T4363 676-678 IN denotes to
T4364 679-682 DT denotes the
T4365 690-695 NN denotes scale
T4366 683-686 CD denotes 201
T4367 687-689 NN denotes kb
T4368 696-698 IN denotes of
T4369 699-702 NN denotes BAC
T4370 708-716 NN denotes 23_387H4
T4371 703-707 NN denotes RPCI
T4372 707-708 HYPH denotes -
T4373 716-717 . denotes .
R2613 T4216 T4217 amod Physical,map
R2614 T4218 T4216 cc and,Physical
R2615 T4219 T4216 conj transcript,Physical
R2616 T4220 T4217 prep of,map
R2617 T4221 T4222 det the,region
R2618 T4222 T4220 pobj region,of
R2619 T4223 T4224 compound Mcoln1,gene
R2620 T4224 T4222 compound gene,region
R2621 T4225 T4217 punct .,map
R2622 T4227 T4228 punct (,A
R2623 T4228 T4229 meta A,map
R2624 T4230 T4228 punct ),A
R2625 T4231 T4229 amod Physical,map
R2626 T4232 T4229 amod showing,map
R2627 T4233 T4234 det a,segment
R2628 T4234 T4229 appos segment,map
R2629 T4235 T4236 nummod 590,kb
R2630 T4236 T4234 compound kb,segment
R2631 T4237 T4234 prep of,segment
R2632 T4238 T4239 compound mouse,chromosome
R2633 T4239 T4237 pobj chromosome,of
R2634 T4240 T4239 nummod 8,chromosome
R2635 T4241 T4234 amod syntenous,segment
R2636 T4242 T4241 prep to,syntenous
R2637 T4243 T4244 amod human,chromosome
R2638 T4244 T4242 pobj chromosome,to
R2639 T4245 T4244 nummod 19,chromosome
R2640 T4246 T4234 punct ", ",segment
R2641 T4247 T4234 acl anchored,segment
R2642 T4248 T4247 agent by,anchored
R2643 T4249 T4250 det the,Insr
R2644 T4250 T4248 pobj Insr,by
R2645 T4251 T4250 compound genes,Insr
R2646 T4252 T4250 cc and,Insr
R2647 T4253 T4250 conj Nte,Insr
R2648 T4254 T4229 punct .,map
R2649 T4256 T4257 det The,region
R2650 T4257 T4258 nsubjpass region,covered
R2651 T4259 T4258 auxpass is,covered
R2652 T4260 T4258 agent by,covered
R2653 T4261 T4262 nummod three,BACs
R2654 T4262 T4260 pobj BACs,by
R2655 T4263 T4262 punct : ,BACs
R2656 T4264 T4265 compound RPCI,23_334D24
R2657 T4265 T4262 appos 23_334D24,BACs
R2658 T4266 T4265 punct -,23_334D24
R2659 T4267 T4268 punct (,AC087153
R2660 T4268 T4265 parataxis AC087153,23_334D24
R2661 T4269 T4268 punct ),AC087153
R2662 T4270 T4265 punct ", ",23_334D24
R2663 T4271 T4272 compound RPCI,23_312B8
R2664 T4272 T4265 conj 23_312B8,23_334D24
R2665 T4273 T4272 punct -,23_312B8
R2666 T4274 T4275 punct (,AC087150
R2667 T4275 T4272 parataxis AC087150,23_312B8
R2668 T4276 T4275 punct ),AC087150
R2669 T4277 T4272 punct ", ",23_312B8
R2670 T4278 T4272 cc and,23_312B8
R2671 T4279 T4280 compound RPCI,23_387H4
R2672 T4280 T4272 conj 23_387H4,23_312B8
R2673 T4281 T4280 punct -,23_387H4
R2674 T4282 T4283 punct (,AC079544
R2675 T4283 T4280 parataxis AC079544,23_387H4
R2676 T4284 T4283 punct ),AC079544
R2677 T4285 T4258 punct .,covered
R2678 T4287 T4288 punct (,B
R2679 T4288 T4289 meta B,shows
R2680 T4290 T4288 punct ),B
R2681 T4291 T4292 det The,map
R2682 T4292 T4289 nsubj map,shows
R2683 T4293 T4292 compound transcript,map
R2684 T4294 T4292 prep of,map
R2685 T4295 T4294 pobj Mcoln1,of
R2686 T4296 T4297 nummod 14,exons
R2687 T4297 T4289 dobj exons,shows
R2688 T4298 T4289 punct ", ",shows
R2689 T4299 T4289 cc and,shows
R2690 T4300 T4301 det the,locations
R2691 T4301 T4302 nsubjpass locations,illustrated
R2692 T4302 T4289 conj illustrated,shows
R2693 T4303 T4301 prep of,locations
R2694 T4304 T4305 det the,probes
R2695 T4305 T4303 pobj probes,of
R2696 T4306 T4305 acl used,probes
R2697 T4307 T4306 prep in,used
R2698 T4308 T4309 det this,study
R2699 T4309 T4307 pobj study,in
R2700 T4310 T4302 auxpass are,illustrated
R2701 T4311 T4302 punct .,illustrated
R2702 T4313 T4314 det The,map
R2703 T4314 T4315 nsubj map,shows
R2704 T4316 T4315 advmod also,shows
R2705 T4317 T4318 det the,exon
R2706 T4318 T4315 dobj exon,shows
R2707 T4319 T4318 amod expanded,exon
R2708 T4320 T4318 nummod 13,exon
R2709 T4321 T4315 prep in,shows
R2710 T4322 T4323 det the,transcript
R2711 T4323 T4321 pobj transcript,in
R2712 T4324 T4325 advmod alternatively,spliced
R2713 T4325 T4323 amod spliced,transcript
R2714 T4326 T4327 punct (,box
R2715 T4327 T4315 parataxis box,shows
R2716 T4328 T4327 amod hashed,box
R2717 T4329 T4327 punct ),box
R2718 T4330 T4315 punct .,shows
R2719 T4332 T4333 compound UniGene,Mm.39099
R2720 T4333 T4335 nsubj Mm.39099,is
R2721 T4334 T4333 compound cluster,Mm.39099
R2722 T4336 T4337 det the,homologue
R2723 T4337 T4335 attr homologue,is
R2724 T4338 T4337 prep of,homologue
R2725 T4339 T4340 det the,gene
R2726 T4340 T4338 pobj gene,of
R2727 T4341 T4340 amod human,gene
R2728 T4342 T4340 compound zinc,gene
R2729 T4343 T4340 compound finger,gene
R2730 T4344 T4345 punct (,AC001252
R2731 T4345 T4335 parataxis AC001252,is
R2732 T4346 T4345 punct ),AC001252
R2733 T4347 T4335 punct .,is
R2734 T4349 T4350 nsubjpass It,noted
R2735 T4351 T4350 aux should,noted
R2736 T4352 T4350 auxpass be,noted
R2737 T4353 T4354 mark that,is
R2738 T4354 T4350 ccomp is,noted
R2739 T4355 T4356 det the,scale
R2740 T4356 T4354 nsubj scale,is
R2741 T4357 T4356 prep of,scale
R2742 T4358 T4359 det the,map
R2743 T4359 T4357 pobj map,of
R2744 T4360 T4359 compound transcript,map
R2745 T4361 T4354 prep in,is
R2746 T4362 T4361 pobj reference,in
R2747 T4363 T4362 prep to,reference
R2748 T4364 T4365 det the,scale
R2749 T4365 T4363 pobj scale,to
R2750 T4366 T4367 nummod 201,kb
R2751 T4367 T4365 compound kb,scale
R2752 T4368 T4365 prep of,scale
R2753 T4369 T4370 compound BAC,23_387H4
R2754 T4370 T4368 pobj 23_387H4,of
R2755 T4371 T4370 compound RPCI,23_387H4
R2756 T4372 T4370 punct -,23_387H4
R2757 T4373 T4350 punct .,noted

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4193 0-8 _FRAGMENT denotes Physical
T4194 24-27 SO:0001249 denotes map
T4195 13-23 SO:0000673 denotes transcript
T4196 35-41 PR:000010252 denotes Mcoln1
T4197 42-46 SO:0000704 denotes gene
T4198 59-71 SO:0001249 denotes Physical map
T4199 100-105 NCBITaxon:10088 denotes mouse
T4200 119-128 SO:0000860 denotes syntenous
T4201 132-137 NCBITaxon:9606 denotes human
T4202 169-174 SO:0000704 denotes genes
T4203 184-187 PR:000012946 denotes Nte
T4204 220-224 SO:0000153 denotes BACs
T4205 317-327 SO:0000673 denotes transcript
T4206 335-341 PR:000010252 denotes Mcoln1
T4207 351-356 SO:0000147 denotes exons
T4208 458-462 SO:0000147 denotes exon
T4209 473-494 GO:0000380 denotes alternatively spliced
T4210 473-505 SO:1001187 denotes alternatively spliced transcript
T4211 552-561 SO:0000853 denotes homologue
T4212 569-574 NCBITaxon:9606 denotes human
T4213 587-591 SO:0000704 denotes gene
T4214 645-655 SO:0000673 denotes transcript
T4215 699-702 SO:0000153 denotes BAC
R2612 T4194 T4193 _lexicallyChainedTo map,Physical

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4374 0-8 _FRAGMENT denotes Physical
T4375 24-27 SO_EXT:0001249 denotes map
T4376 13-23 SO_EXT:0000673 denotes transcript
T4377 35-41 PR_EXT:000010252 denotes Mcoln1
T4378 42-46 SO_EXT:0000704 denotes gene
T4379 59-71 SO_EXT:0001249 denotes Physical map
T4380 87-88 CHEBI_SO_EXT:base denotes b
T4381 89-99 _FRAGMENT denotes segment of
T4382 106-116 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosome
T4383 100-105 NCBITaxon:10088 denotes mouse
T4384 119-128 SO:0000860 denotes syntenous
T4385 132-137 NCBITaxon:9606 denotes human
T4386 138-148 GO_SO_EXT:chromosome denotes chromosome
T4387 169-174 SO_EXT:0000704 denotes genes
T4388 175-179 GO_PR_EXT:insulin_receptor denotes Insr
T4389 184-187 PR_EXT:000012946 denotes Nte
T4390 220-224 SO_EXT:0000153 denotes BACs
T4391 317-327 SO_EXT:0000673 denotes transcript
T4392 335-341 PR_EXT:000010252 denotes Mcoln1
T4393 351-356 SO_EXT:0000147 denotes exons
T4394 383-389 CHEBI_SO_EXT:molecular_probe denotes probes
T4395 458-462 SO_EXT:0000147 denotes exon
T4396 473-494 GO:0000380 denotes alternatively spliced
T4397 473-505 SO_EXT:1001187 denotes alternatively spliced transcript
T4398 552-561 SO_EXT:0000853 denotes homologue
T4399 569-574 NCBITaxon:9606 denotes human
T4400 575-579 CHEBI_EXT:zinc denotes zinc
T4401 587-591 SO_EXT:0000704 denotes gene
T4402 645-655 SO_EXT:0000673 denotes transcript
T4403 688-689 CHEBI_SO_EXT:base denotes b
T4404 699-702 SO_EXT:0000153 denotes BAC
R2758 T4375 T4374 _lexicallyChainedTo map,Physical
R2759 T4382 T4381 _lexicallyChainedTo chromosome,segment of