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PMC:88885 / 10477-11598 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T2515 0-4 RB denotes Next
T2516 18-26 VBD denotes compared
T2517 4-6 , denotes ,
T2518 6-8 PRP denotes we
T2519 9-17 RB denotes directly
T2520 27-30 DT denotes the
T2521 57-65 NN denotes sequence
T2522 31-41 NN denotes nucleotide
T2523 42-45 CC denotes and
T2524 46-51 NN denotes amino
T2525 52-56 NN denotes acid
T2526 66-68 IN denotes of
T2527 69-72 DT denotes the
T2528 101-111 NN denotes transcript
T2529 73-86 RB denotes alternatively
T2530 87-94 VBN denotes spliced
T2531 95-100 NN denotes mouse
T2532 112-114 IN denotes to
T2533 115-118 DT denotes the
T2534 147-155 NN denotes sequence
T2535 119-125 JJ denotes entire
T2536 126-131 JJ denotes human
T2537 132-138 NN denotes MCOLN1
T2538 139-146 JJ denotes genomic
T2539 156-159 CC denotes and
T2540 160-165 VBD denotes found
T2541 166-168 DT denotes no
T2542 181-191 NN denotes similarity
T2543 169-180 JJ denotes significant
T2544 191-192 . denotes .
T2545 192-300 sentence denotes As mentioned previously, Northern blots performed with human MCOLN1 probes show only one 2.4 kb transcript.
T2546 193-195 IN denotes As
T2547 196-205 VBN denotes mentioned
T2548 268-272 VBP denotes show
T2549 206-216 RB denotes previously
T2550 216-218 , denotes ,
T2551 218-226 NNP denotes Northern
T2552 227-232 NNS denotes blots
T2553 233-242 VBN denotes performed
T2554 243-247 IN denotes with
T2555 248-253 JJ denotes human
T2556 254-260 NN denotes MCOLN1
T2557 261-267 NNS denotes probes
T2558 273-277 RB denotes only
T2559 289-299 NN denotes transcript
T2560 278-281 CD denotes one
T2561 282-285 CD denotes 2.4
T2562 286-288 NN denotes kb
T2563 299-300 . denotes .
T2564 300-440 sentence denotes In addition, we hybridized a human multiple tissue Northern and human Southern with a probe in human intron 12 that is adjacent to exon 13.
T2565 301-303 IN denotes In
T2566 317-327 VBD denotes hybridized
T2567 304-312 NN denotes addition
T2568 312-314 , denotes ,
T2569 314-316 PRP denotes we
T2570 328-329 DT denotes a
T2571 352-360 NNP denotes Northern
T2572 330-335 JJ denotes human
T2573 336-344 JJ denotes multiple
T2574 345-351 NN denotes tissue
T2575 361-364 CC denotes and
T2576 365-370 JJ denotes human
T2577 371-379 NNP denotes Southern
T2578 380-384 IN denotes with
T2579 385-386 DT denotes a
T2580 387-392 NN denotes probe
T2581 393-395 IN denotes in
T2582 396-401 JJ denotes human
T2583 402-408 NN denotes intron
T2584 409-411 CD denotes 12
T2585 412-416 WDT denotes that
T2586 417-419 VBZ denotes is
T2587 420-428 JJ denotes adjacent
T2588 429-431 IN denotes to
T2589 432-436 NN denotes exon
T2590 437-439 CD denotes 13
T2591 439-440 . denotes .
T2592 440-539 sentence denotes The probe was located in the region syntenic to that which encodes the alternate mouse transcript.
T2593 441-444 DT denotes The
T2594 445-450 NN denotes probe
T2595 455-462 VBN denotes located
T2596 451-454 VBD denotes was
T2597 463-465 IN denotes in
T2598 466-469 DT denotes the
T2599 470-476 NN denotes region
T2600 477-485 JJ denotes syntenic
T2601 486-488 IN denotes to
T2602 489-493 DT denotes that
T2603 494-499 WDT denotes which
T2604 500-507 VBZ denotes encodes
T2605 508-511 DT denotes the
T2606 528-538 NN denotes transcript
T2607 512-521 JJ denotes alternate
T2608 522-527 NN denotes mouse
T2609 538-539 . denotes .
T2610 539-711 sentence denotes Only the expected bands were detected on the Southern and no bands were detected on the Northern, confirming that this alternative transcript is specific to murine Mcoln1.
T2611 540-544 RB denotes Only
T2612 558-563 NNS denotes bands
T2613 545-548 DT denotes the
T2614 549-557 VBN denotes expected
T2615 569-577 VBN denotes detected
T2616 564-568 VBD denotes were
T2617 578-580 IN denotes on
T2618 581-584 DT denotes the
T2619 585-593 NNP denotes Southern
T2620 594-597 CC denotes and
T2621 598-600 DT denotes no
T2622 601-606 NNS denotes bands
T2623 612-620 VBN denotes detected
T2624 607-611 VBD denotes were
T2625 621-623 IN denotes on
T2626 624-627 DT denotes the
T2627 628-636 NNP denotes Northern
T2628 636-638 , denotes ,
T2629 638-648 VBG denotes confirming
T2630 649-653 IN denotes that
T2631 682-684 VBZ denotes is
T2632 654-658 DT denotes this
T2633 671-681 NN denotes transcript
T2634 659-670 JJ denotes alternative
T2635 685-693 JJ denotes specific
T2636 694-696 IN denotes to
T2637 697-703 JJ denotes murine
T2638 704-710 NN denotes Mcoln1
T2639 710-711 . denotes .
T2640 711-879 sentence denotes Recent BLASTP analysis of the alternate Mcoln1 transcript yields a match to a putative 145 amino acid anonymous protein (GB No. BAB25862) predicted from a RIKEN clone.
T2641 712-718 JJ denotes Recent
T2642 726-734 NN denotes analysis
T2643 719-725 NN denotes BLASTP
T2644 770-776 VBZ denotes yields
T2645 735-737 IN denotes of
T2646 738-741 DT denotes the
T2647 759-769 NN denotes transcript
T2648 742-751 JJ denotes alternate
T2649 752-758 NN denotes Mcoln1
T2650 777-778 DT denotes a
T2651 779-784 NN denotes match
T2652 785-787 IN denotes to
T2653 788-789 DT denotes a
T2654 824-831 NN denotes protein
T2655 790-798 JJ denotes putative
T2656 799-802 CD denotes 145
T2657 809-813 NN denotes acid
T2658 803-808 NN denotes amino
T2659 814-823 JJ denotes anonymous
T2660 832-833 -LRB- denotes (
T2661 840-848 NN denotes BAB25862
T2662 833-835 NN denotes GB
T2663 836-839 NN denotes No.
T2664 848-849 -RRB- denotes )
T2665 850-859 VBN denotes predicted
T2666 860-864 IN denotes from
T2667 865-866 DT denotes a
T2668 873-878 NN denotes clone
T2669 867-872 NN denotes RIKEN
T2670 878-879 . denotes .
T2671 879-1121 sentence denotes It is obvious from our results, however, that the identification of this sequence as a full-length protein is incorrect since probes unique to the clone, as well as probes containing the Mcoln1 coding sequence, identify the same transcripts.
T2672 880-882 PRP denotes It
T2673 883-885 VBZ denotes is
T2674 886-893 JJ denotes obvious
T2675 894-898 IN denotes from
T2676 899-902 PRP$ denotes our
T2677 903-910 NNS denotes results
T2678 910-912 , denotes ,
T2679 912-919 RB denotes however
T2680 919-921 , denotes ,
T2681 921-925 IN denotes that
T2682 987-989 VBZ denotes is
T2683 926-929 DT denotes the
T2684 930-944 NN denotes identification
T2685 945-947 IN denotes of
T2686 948-952 DT denotes this
T2687 953-961 NN denotes sequence
T2688 962-964 IN denotes as
T2689 965-966 DT denotes a
T2690 979-986 NN denotes protein
T2691 967-971 JJ denotes full
T2692 972-978 NN denotes length
T2693 971-972 HYPH denotes -
T2694 990-999 JJ denotes incorrect
T2695 1000-1005 IN denotes since
T2696 1091-1099 VBP denotes identify
T2697 1006-1012 NNS denotes probes
T2698 1013-1019 JJ denotes unique
T2699 1020-1022 IN denotes to
T2700 1023-1026 DT denotes the
T2701 1027-1032 NN denotes clone
T2702 1032-1034 , denotes ,
T2703 1034-1036 RB denotes as
T2704 1042-1044 IN denotes as
T2705 1037-1041 RB denotes well
T2706 1045-1051 NNS denotes probes
T2707 1052-1062 VBG denotes containing
T2708 1063-1066 DT denotes the
T2709 1081-1089 NN denotes sequence
T2710 1067-1073 NN denotes Mcoln1
T2711 1074-1080 NN denotes coding
T2712 1089-1091 , denotes ,
T2713 1100-1103 DT denotes the
T2714 1109-1120 NNS denotes transcripts
T2715 1104-1108 JJ denotes same
T2716 1120-1121 . denotes .
R1584 T2515 T2516 advmod Next,compared
R1585 T2517 T2516 punct ", ",compared
R1586 T2518 T2516 nsubj we,compared
R1587 T2519 T2516 advmod directly,compared
R1588 T2520 T2521 det the,sequence
R1589 T2521 T2516 dobj sequence,compared
R1590 T2522 T2521 nmod nucleotide,sequence
R1591 T2523 T2522 cc and,nucleotide
R1592 T2524 T2525 compound amino,acid
R1593 T2525 T2522 conj acid,nucleotide
R1594 T2526 T2521 prep of,sequence
R1595 T2527 T2528 det the,transcript
R1596 T2528 T2526 pobj transcript,of
R1597 T2529 T2530 advmod alternatively,spliced
R1598 T2530 T2528 amod spliced,transcript
R1599 T2531 T2528 compound mouse,transcript
R1600 T2532 T2516 prep to,compared
R1601 T2533 T2534 det the,sequence
R1602 T2534 T2532 pobj sequence,to
R1603 T2535 T2534 amod entire,sequence
R1604 T2536 T2537 amod human,MCOLN1
R1605 T2537 T2534 nmod MCOLN1,sequence
R1606 T2538 T2534 amod genomic,sequence
R1607 T2539 T2516 cc and,compared
R1608 T2540 T2516 conj found,compared
R1609 T2541 T2542 det no,similarity
R1610 T2542 T2540 dobj similarity,found
R1611 T2543 T2542 amod significant,similarity
R1612 T2544 T2516 punct .,compared
R1613 T2546 T2547 mark As,mentioned
R1614 T2547 T2548 advcl mentioned,show
R1615 T2549 T2547 advmod previously,mentioned
R1616 T2550 T2548 punct ", ",show
R1617 T2551 T2552 compound Northern,blots
R1618 T2552 T2548 nsubj blots,show
R1619 T2553 T2552 acl performed,blots
R1620 T2554 T2553 prep with,performed
R1621 T2555 T2556 amod human,MCOLN1
R1622 T2556 T2557 compound MCOLN1,probes
R1623 T2557 T2554 pobj probes,with
R1624 T2558 T2559 advmod only,transcript
R1625 T2559 T2548 dobj transcript,show
R1626 T2560 T2559 nummod one,transcript
R1627 T2561 T2562 nummod 2.4,kb
R1628 T2562 T2559 compound kb,transcript
R1629 T2563 T2548 punct .,show
R1630 T2565 T2566 prep In,hybridized
R1631 T2567 T2565 pobj addition,In
R1632 T2568 T2566 punct ", ",hybridized
R1633 T2569 T2566 nsubj we,hybridized
R1634 T2570 T2571 det a,Northern
R1635 T2571 T2566 dobj Northern,hybridized
R1636 T2572 T2571 amod human,Northern
R1637 T2573 T2574 amod multiple,tissue
R1638 T2574 T2571 compound tissue,Northern
R1639 T2575 T2571 cc and,Northern
R1640 T2576 T2577 amod human,Southern
R1641 T2577 T2571 conj Southern,Northern
R1642 T2578 T2566 prep with,hybridized
R1643 T2579 T2580 det a,probe
R1644 T2580 T2578 pobj probe,with
R1645 T2581 T2580 prep in,probe
R1646 T2582 T2583 amod human,intron
R1647 T2583 T2581 pobj intron,in
R1648 T2584 T2583 nummod 12,intron
R1649 T2585 T2586 dep that,is
R1650 T2586 T2580 relcl is,probe
R1651 T2587 T2586 acomp adjacent,is
R1652 T2588 T2587 prep to,adjacent
R1653 T2589 T2588 pobj exon,to
R1654 T2590 T2589 nummod 13,exon
R1655 T2591 T2566 punct .,hybridized
R1656 T2593 T2594 det The,probe
R1657 T2594 T2595 nsubjpass probe,located
R1658 T2596 T2595 auxpass was,located
R1659 T2597 T2595 prep in,located
R1660 T2598 T2599 det the,region
R1661 T2599 T2597 pobj region,in
R1662 T2600 T2599 amod syntenic,region
R1663 T2601 T2600 prep to,syntenic
R1664 T2602 T2601 pobj that,to
R1665 T2603 T2604 dep which,encodes
R1666 T2604 T2602 relcl encodes,that
R1667 T2605 T2606 det the,transcript
R1668 T2606 T2604 dobj transcript,encodes
R1669 T2607 T2606 amod alternate,transcript
R1670 T2608 T2606 compound mouse,transcript
R1671 T2609 T2595 punct .,located
R1672 T2611 T2612 advmod Only,bands
R1673 T2612 T2615 nsubjpass bands,detected
R1674 T2613 T2612 det the,bands
R1675 T2614 T2612 amod expected,bands
R1676 T2616 T2615 auxpass were,detected
R1677 T2617 T2615 prep on,detected
R1678 T2618 T2619 det the,Southern
R1679 T2619 T2617 pobj Southern,on
R1680 T2620 T2615 cc and,detected
R1681 T2621 T2622 det no,bands
R1682 T2622 T2623 nsubjpass bands,detected
R1683 T2623 T2615 conj detected,detected
R1684 T2624 T2623 auxpass were,detected
R1685 T2625 T2623 prep on,detected
R1686 T2626 T2627 det the,Northern
R1687 T2627 T2625 pobj Northern,on
R1688 T2628 T2615 punct ", ",detected
R1689 T2629 T2615 advcl confirming,detected
R1690 T2630 T2631 mark that,is
R1691 T2631 T2629 ccomp is,confirming
R1692 T2632 T2633 det this,transcript
R1693 T2633 T2631 nsubj transcript,is
R1694 T2634 T2633 amod alternative,transcript
R1695 T2635 T2631 acomp specific,is
R1696 T2636 T2635 prep to,specific
R1697 T2637 T2638 amod murine,Mcoln1
R1698 T2638 T2636 pobj Mcoln1,to
R1699 T2639 T2615 punct .,detected
R1700 T2641 T2642 amod Recent,analysis
R1701 T2642 T2644 nsubj analysis,yields
R1702 T2643 T2642 compound BLASTP,analysis
R1703 T2645 T2642 prep of,analysis
R1704 T2646 T2647 det the,transcript
R1705 T2647 T2645 pobj transcript,of
R1706 T2648 T2647 amod alternate,transcript
R1707 T2649 T2647 compound Mcoln1,transcript
R1708 T2650 T2651 det a,match
R1709 T2651 T2644 dobj match,yields
R1710 T2652 T2651 prep to,match
R1711 T2653 T2654 det a,protein
R1712 T2654 T2652 pobj protein,to
R1713 T2655 T2654 amod putative,protein
R1714 T2656 T2657 nummod 145,acid
R1715 T2657 T2654 nmod acid,protein
R1716 T2658 T2657 nmod amino,acid
R1717 T2659 T2654 amod anonymous,protein
R1718 T2660 T2661 punct (,BAB25862
R1719 T2661 T2654 parataxis BAB25862,protein
R1720 T2662 T2661 compound GB,BAB25862
R1721 T2663 T2661 compound No.,BAB25862
R1722 T2664 T2661 punct ),BAB25862
R1723 T2665 T2654 acl predicted,protein
R1724 T2666 T2665 prep from,predicted
R1725 T2667 T2668 det a,clone
R1726 T2668 T2666 pobj clone,from
R1727 T2669 T2668 compound RIKEN,clone
R1728 T2670 T2644 punct .,yields
R1729 T2672 T2673 nsubj It,is
R1730 T2674 T2673 acomp obvious,is
R1731 T2675 T2673 prep from,is
R1732 T2676 T2677 poss our,results
R1733 T2677 T2675 pobj results,from
R1734 T2678 T2673 punct ", ",is
R1735 T2679 T2673 advmod however,is
R1736 T2680 T2673 punct ", ",is
R1737 T2681 T2682 mark that,is
R1738 T2682 T2673 ccomp is,is
R1739 T2683 T2684 det the,identification
R1740 T2684 T2682 nsubj identification,is
R1741 T2685 T2684 prep of,identification
R1742 T2686 T2687 det this,sequence
R1743 T2687 T2685 pobj sequence,of
R1744 T2688 T2684 prep as,identification
R1745 T2689 T2690 det a,protein
R1746 T2690 T2688 pobj protein,as
R1747 T2691 T2692 amod full,length
R1748 T2692 T2690 compound length,protein
R1749 T2693 T2692 punct -,length
R1750 T2694 T2682 acomp incorrect,is
R1751 T2695 T2696 mark since,identify
R1753 T2697 T2696 nsubj probes,identify
R1754 T2698 T2697 amod unique,probes
R1755 T2699 T2698 prep to,unique
R1756 T2700 T2701 det the,clone
R1757 T2701 T2699 pobj clone,to
R1758 T2702 T2697 punct ", ",probes
R1759 T2703 T2704 advmod as,as
R1760 T2704 T2697 cc as,probes
R1761 T2705 T2704 advmod well,as
R1762 T2706 T2697 conj probes,probes
R1763 T2707 T2706 acl containing,probes
R1764 T2708 T2709 det the,sequence
R1772 T2716 T2673 punct .,is
R1752 T2696 T2682 advcl identify,is
R1765 T2709 T2707 dobj sequence,containing
R1766 T2710 T2709 compound Mcoln1,sequence
R1767 T2711 T2709 compound coding,sequence
R1768 T2712 T2696 punct ", ",identify
R1769 T2713 T2714 det the,transcripts
R1770 T2714 T2696 dobj transcripts,identify
R1771 T2715 T2714 amod same,transcripts

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2076 73-94 GO:0000380 denotes alternatively spliced
T2077 73-94 _FRAGMENT denotes alternatively spliced
T2078 101-111 SO:1001187 denotes transcript
T2079 95-100 NCBITaxon:10088 denotes mouse
T2080 126-131 NCBITaxon:9606 denotes human
T2081 132-138 PR:000010252 denotes MCOLN1
T2082 139-146 SO:0001026 denotes genomic
T2083 248-253 NCBITaxon:9606 denotes human
T2084 254-260 PR:000010252 denotes MCOLN1
T2085 289-299 SO:0000673 denotes transcript
T2086 317-327 GO:0097617 denotes hybridized
T2087 330-335 NCBITaxon:9606 denotes human
T2088 345-351 UBERON:0000479 denotes tissue
T2089 365-370 NCBITaxon:9606 denotes human
T2090 396-401 NCBITaxon:9606 denotes human
T2091 402-408 SO:0000188 denotes intron
T2092 432-436 SO:0000147 denotes exon
T2093 477-485 SO:0000860 denotes syntenic
T2094 512-521 _FRAGMENT denotes alternate
T2095 528-538 SO:1001187 denotes transcript
T2096 522-527 NCBITaxon:10088 denotes mouse
T2097 659-681 SO:1001187 denotes alternative transcript
T2098 697-703 NCBITaxon:39107 denotes murine
T2099 704-710 PR:000010252 denotes Mcoln1
T2100 742-751 _FRAGMENT denotes alternate
T2101 759-769 SO:1001187 denotes transcript
T2102 752-758 PR:000010252 denotes Mcoln1
T2103 1067-1073 PR:000010252 denotes Mcoln1
T2104 1109-1120 SO:0000673 denotes transcripts
R1197 T2078 T2077 _lexicallyChainedTo transcript,alternatively spliced
R1198 T2095 T2094 _lexicallyChainedTo transcript,alternate
R1199 T2101 T2100 _lexicallyChainedTo transcript,alternate

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2817 31-41 CHEBI_SO_EXT:nucleotide denotes nucleotide
T2818 46-56 CHEBI_SO_EXT:amino_acid denotes amino acid
T2819 57-65 SO_EXT:biological_sequence denotes sequence
T2820 73-94 GO:0000380 denotes alternatively spliced
T2821 73-94 _FRAGMENT denotes alternatively spliced
T2822 101-111 SO_EXT:1001187 denotes transcript
T2823 95-100 NCBITaxon:10088 denotes mouse
T2824 126-131 NCBITaxon:9606 denotes human
T2825 132-138 PR_EXT:000010252 denotes MCOLN1
T2826 139-146 SO_EXT:0001026 denotes genomic
T2827 147-155 SO_EXT:biological_sequence denotes sequence
T2828 248-253 NCBITaxon:9606 denotes human
T2829 254-260 PR_EXT:000010252 denotes MCOLN1
T2830 261-267 CHEBI_SO_EXT:molecular_probe denotes probes
T2831 287-288 CHEBI_SO_EXT:base denotes b
T2832 289-299 SO_EXT:0000673 denotes transcript
T2833 317-327 GO:0097617 denotes hybridized
T2834 330-335 NCBITaxon:9606 denotes human
T2835 345-351 UBERON:0000479 denotes tissue
T2836 365-370 NCBITaxon:9606 denotes human
T2837 387-392 CHEBI_SO_EXT:molecular_probe denotes probe
T2838 396-401 NCBITaxon:9606 denotes human
T2839 402-408 SO_EXT:0000188 denotes intron
T2840 432-436 SO_EXT:0000147 denotes exon
T2841 445-450 CHEBI_SO_EXT:molecular_probe denotes probe
T2842 477-485 SO:0000860 denotes syntenic
T2843 500-507 SO_EXT:sequence_coding_function denotes encodes
T2844 512-521 _FRAGMENT denotes alternate
T2845 528-538 SO_EXT:1001187 denotes transcript
T2846 522-527 NCBITaxon:10088 denotes mouse
T2847 659-681 SO_EXT:1001187 denotes alternative transcript
T2848 697-703 NCBITaxon:39107 denotes murine
T2849 704-710 PR_EXT:000010252 denotes Mcoln1
T2850 742-751 _FRAGMENT denotes alternate
T2851 759-769 SO_EXT:1001187 denotes transcript
T2852 752-758 PR_EXT:000010252 denotes Mcoln1
T2853 803-813 CHEBI_SO_EXT:amino_acid denotes amino acid
T2854 824-831 CHEBI_PR_EXT:protein denotes protein
T2855 873-878 SO_EXT:sequence_cloned_entity denotes clone
T2856 953-961 SO_EXT:biological_sequence denotes sequence
T2857 979-986 CHEBI_PR_EXT:protein denotes protein
T2858 1006-1012 CHEBI_SO_EXT:molecular_probe denotes probes
T2859 1027-1032 SO_EXT:sequence_cloned_entity denotes clone
T2860 1045-1051 CHEBI_SO_EXT:molecular_probe denotes probes
T2861 1067-1073 PR_EXT:000010252 denotes Mcoln1
T2862 1074-1089 SO_EXT:coding_sequence denotes coding sequence
T2863 1109-1120 SO_EXT:0000673 denotes transcripts
R1773 T2822 T2821 _lexicallyChainedTo transcript,alternatively spliced
R1774 T2845 T2844 _lexicallyChainedTo transcript,alternate
R1775 T2851 T2850 _lexicallyChainedTo transcript,alternate