PMC:8275577 / 7300-8293 JSONTXT

{"project":"Zoonoses","denotations":[{"id":"T130","span":{"begin":342,"end":349},"obj":"Area"},{"id":"T1264","span":{"begin":381,"end":390},"obj":"Area"},{"id":"T1269","span":{"begin":406,"end":414},"obj":"Area"},{"id":"T1278","span":{"begin":435,"end":436},"obj":"Area"},{"id":"T1279","span":{"begin":417,"end":418},"obj":"Area"},{"id":"T1280","span":{"begin":339,"end":340},"obj":"Area"},{"id":"T1281","span":{"begin":352,"end":353},"obj":"Area"},{"id":"T1282","span":{"begin":366,"end":368},"obj":"Area"},{"id":"T1283","span":{"begin":378,"end":379},"obj":"Area"},{"id":"T1284","span":{"begin":393,"end":394},"obj":"Area"},{"id":"T1285","span":{"begin":403,"end":404},"obj":"Area"},{"id":"T1286","span":{"begin":616,"end":624},"obj":"Variation"},{"id":"T1287","span":{"begin":677,"end":686},"obj":"Variation"},{"id":"T1288","span":{"begin":834,"end":843},"obj":"Variation"},{"id":"T1355","span":{"begin":874,"end":878},"obj":"Number"},{"id":"T141","span":{"begin":438,"end":445},"obj":"Area"},{"id":"T295","span":{"begin":355,"end":363},"obj":"Area"},{"id":"T332","span":{"begin":878,"end":879},"obj":"Unit"},{"id":"T386","span":{"begin":396,"end":400},"obj":"Area"},{"id":"T414","span":{"begin":93,"end":130},"obj":"Species"},{"id":"T433","span":{"begin":370,"end":375},"obj":"Area"},{"id":"T452","span":{"begin":420,"end":428},"obj":"Area"},{"id":"T504","span":{"begin":49,"end":53},"obj":"Number"},{"id":"T542","span":{"begin":960,"end":964},"obj":"Species"},{"id":"T599","span":{"begin":28,"end":31},"obj":"Gene"},{"id":"T626","span":{"begin":32,"end":41},"obj":"Unit"},{"id":"T641","span":{"begin":0,"end":9},"obj":"Biological"},{"id":"T674","span":{"begin":469,"end":479},"obj":"Environment"},{"id":"T694","span":{"begin":490,"end":500},"obj":"Biological"},{"id":"T695","span":{"begin":579,"end":589},"obj":"Biological"},{"id":"T696","span":{"begin":724,"end":734},"obj":"Biological"},{"id":"T697","span":{"begin":781,"end":791},"obj":"Biological"},{"id":"T89","span":{"begin":54,"end":65},"obj":"Species"},{"id":"T961","span":{"begin":132,"end":140},"obj":"Species"},{"id":"T962","span":{"begin":984,"end":992},"obj":"Species"},{"id":"T1417","span":{"begin":182,"end":203},"obj":"Method"},{"id":"T1418","span":{"begin":603,"end":615},"obj":"Number"},{"id":"T1419","span":{"begin":687,"end":690},"obj":"Number"},{"id":"T1420","span":{"begin":716,"end":723},"obj":"Without"},{"id":"T1421","span":{"begin":818,"end":833},"obj":"Number"},{"id":"T1422","span":{"begin":845,"end":874},"obj":"Index"},{"id":"T1423","span":{"begin":955,"end":959},"obj":"Number"}],"relations":[{"id":"R581","pred":"associate_with","subj":"T1418","obj":"T1286"},{"id":"R582","pred":"associate_with","subj":"T1419","obj":"T1287"},{"id":"R583","pred":"associate_with","subj":"T1420","obj":"T696"},{"id":"R584","pred":"associate_with","subj":"T1421","obj":"T1288"},{"id":"R585","pred":"associate_with","subj":"T1423","obj":"T542"},{"id":"R586","pred":"associate_with","subj":"T1355","obj":"T1422"},{"id":"R587","pred":"in","subj":"T542","obj":"T962"},{"id":"R390","pred":"abbreviation","subj":"T1280","obj":"T130"},{"id":"R391","pred":"abbreviation","subj":"T1282","obj":"T433"},{"id":"R392","pred":"abbreviation","subj":"T1281","obj":"T295"},{"id":"R393","pred":"abbreviation","subj":"T1283","obj":"T1264"},{"id":"R394","pred":"abbreviation","subj":"T1278","obj":"T141"},{"id":"R395","pred":"abbreviation","subj":"T1279","obj":"T452"},{"id":"R396","pred":"abbreviation","subj":"T1285","obj":"T1269"},{"id":"R397","pred":"abbreviation","subj":"T1284","obj":"T386"},{"id":"R426","pred":"associate_with","subj":"T1355","obj":"T332"},{"id":"R518","pred":"associate_with","subj":"T504","obj":"T89"},{"id":"R577","pred":"abbreviation","subj":"T961","obj":"T414"},{"id":"R578","pred":"in","subj":"T89","obj":"T414"},{"id":"R579","pred":"of_a","subj":"T89","obj":"T599"},{"id":"R580","pred":"of_a","subj":"T599","obj":"T641"}],"attributes":[{"id":"A132","pred":"tao:has_database_id","subj":"T141","obj":"MESH:D014744"},{"id":"A383","pred":"tao:has_database_id","subj":"T452","obj":"MESH:D013785"},{"id":"A434","pred":"tao:has_database_id","subj":"T542","obj":"Tax:9397"},{"id":"A550","pred":"tao:has_database_id","subj":"T694","obj":"MESH:D006239"},{"id":"A851","pred":"tao:has_database_id","subj":"T1281","obj":"MESH:D002160"},{"id":"A858","pred":"tao:has_database_id","subj":"T1288","obj":"MESH:D009154"},{"id":"A533","pred":"tao:has_database_id","subj":"T674","obj":"MESH:D005843"},{"id":"A551","pred":"tao:has_database_id","subj":"T695","obj":"MESH:D006239"},{"id":"A316","pred":"tao:has_database_id","subj":"T386","obj":"MESH:D007812"},{"id":"A476","pred":"tao:has_database_id","subj":"T599","obj":"https://www.ncbi.nlm.nih.gov/nuccore/?term=MW712891:MW713034[pacc]"},{"id":"A364","pred":"tao:has_database_id","subj":"T433","obj":"MESH:D002681"},{"id":"A345","pred":"Memo","subj":"T414","obj":"Tax:2697049"},{"id":"A81","pred":"tao:has_database_id","subj":"T89","obj":"Tax:49442"},{"id":"A286","pred":"tao:has_database_id","subj":"T295","obj":"MESH:D002160"},{"id":"A857","pred":"tao:has_database_id","subj":"T1287","obj":"MESH:D009154"},{"id":"A501","pred":"tao:has_database_id","subj":"T641","obj":"MESH:D006239"},{"id":"A842","pred":"tao:has_database_id","subj":"T1264","obj":"MESH:D007214"},{"id":"A625","pred":"Memo","subj":"T962","obj":"Tax:2697049"},{"id":"A848","pred":"tao:has_database_id","subj":"T1278","obj":"MESH:D014744"},{"id":"A624","pred":"Memo","subj":"T961","obj":"Tax:2697049"},{"id":"A855","pred":"tao:has_database_id","subj":"T1285","obj":"MESH:D008296"},{"id":"A853","pred":"tao:has_database_id","subj":"T1283","obj":"MESH:D007214"},{"id":"A121","pred":"tao:has_database_id","subj":"T130","obj":"MESH:D002052"},{"id":"A850","pred":"tao:has_database_id","subj":"T1280","obj":"MESH:D002052"},{"id":"A552","pred":"tao:has_database_id","subj":"T696","obj":"MESH:D006239"},{"id":"A847","pred":"tao:has_database_id","subj":"T1269","obj":"MESH:D008296"},{"id":"A553","pred":"tao:has_database_id","subj":"T697","obj":"MESH:D006239"},{"id":"A849","pred":"tao:has_database_id","subj":"T1279","obj":"MESH:D013785"},{"id":"A852","pred":"tao:has_database_id","subj":"T1282","obj":"MESH:D002681"},{"id":"A856","pred":"tao:has_database_id","subj":"T1286","obj":"MESH:D009154"},{"id":"A854","pred":"tao:has_database_id","subj":"T1284","obj":"MESH:D007812"}],"text":"Haplotype networks based on CO1 sequences of the four Rhinolophus species found positive for viruses closely related to SARS-CoV-2 (SCoV2rCs). The networks were constructed with the median joining method available in PopART 1.513 and modified under Adobe Illustrator CS6 (version 16.0). The codes used for the countries are the following: B (Myanmar), C (Cambodia), Ch (China), I (Indonesia), L (Laos), M (Malaysia), T (Thailand), and V (Vietnam). Colours indicate the geographic origin of haplotypes according to Fig. 2 (see online supplementary Table S1). The circles indicate haplotypes separated by at least one mutation. The black lines on the branches show the number of mutations ≥ 2. Black circles represent missing haplotypes. Circle size is proportional to the number of haplotypes. Haplogroups separated by more than seven mutations (pairwise nucleotide distances \u003e 1%) are highlighted by dotted lines. The red arrows show the positions of the nine bats found positive for SCoV2rCs."}