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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
42 106-116 Species denotes SARS-CoV-2 Tax:2697049
43 391-396 Species denotes human Tax:9606
44 74-82 Disease denotes COVID-19 MESH:C000657245
45 297-303 Disease denotes deaths MESH:D003643
54 800-808 Disease denotes COVID-19 MESH:C000657245
55 1107-1115 Disease denotes COVID-19 MESH:C000657245
56 1116-1126 Disease denotes infections MESH:D007239
57 1205-1213 Disease denotes COVID-19 MESH:C000657245
58 1453-1461 Disease denotes COVID-19 MESH:C000657245
59 1627-1635 Disease denotes COVID-19 MESH:C000657245
60 1951-1959 Disease denotes COVID-19 MESH:C000657245
61 2067-2075 Disease denotes COVID-19 MESH:C000657245
65 2639-2647 Disease denotes COVID-19 MESH:C000657245
66 2862-2871 Disease denotes infection MESH:D007239
67 2895-2900 Disease denotes death MESH:D003643
72 3252-3260 Species denotes patients Tax:9606
73 3161-3169 Disease denotes COVID-19 MESH:C000657245
74 3236-3245 Disease denotes mortality MESH:D003643
75 3598-3607 Disease denotes mortality MESH:D003643
77 4542-4550 Disease denotes COVID-19 MESH:C000657245
80 4815-4821 Disease denotes deaths MESH:D003643
81 4852-4862 Disease denotes infections MESH:D007239

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T27 0-12 Sentence denotes Introduction
T28 13-733 Sentence denotes Since the initial outbreak in 2019 in Hubei Province, China, COVID-19, the disease caused by SARS-CoV-2, has gone on to cause a pandemic.1 As of 11 May 2020, the Centre for Systems Science and Engineering at Johns Hopkins University reports over 4 000 000 confirmed cases and 250 000 deaths globally.2 National responses to the outbreak have varied: from severe restrictions on human mobility alongside widespread testing and contact tracing in China3 to the comparatively relaxed response in Sweden, where lockdown measures have not been enacted.4 In the UK, advice to socially distance if displaying symptoms was given on 15 March, while school closures and ‘lockdown’ measures were implemented from 23 March onwards.5
T29 734-1649 Sentence denotes Mathematical modelling has been used to predict the course of the COVID-19 pandemic and to evaluate the effectiveness of proposed and enacted interventions.6–11 Prem et al 6 showed that the premature lifting of control strategies at the national level (within China) could lead to an earlier secondary peak; Flaxman et al7 used a semimechanistic model to predict the total COVID-19 infections in 11 countries; Ferguson et al8 used an individual-based simulation model of COVID-19 transmission to explore the effects of non-pharmaceutical interventions within the USA and Great Britain; Challen et al9 estimated the R number among regions of the UK; Danon et al10 used a spatial model to predict the potential course of COVID-19 in England and Wales in the absence of control measures; while Jarvis et al11 analysed the behavioural monitoring data to quantify the impact of control measures on COVID-19 transmission.
T30 1650-2127 Sentence denotes These models have been predominantly aimed at the national level and have largely been based on epidemiological and biological data sourced from the initial epidemic in Wuhan, China,12 and the first large outbreak in Lombardy, Italy.13 These models have also mainly focused on predicting the scale of COVID-19 transmission under various intervention measures, rather than producing estimates for potential numbers of COVID-19-related admissions to acute or intensive care (IC).
T31 2128-2322 Sentence denotes In the UK, the epidemic escalated most rapidly in London,14 and the majority of national modelling is seemingly driven by the trends in London due to its large case numbers and large population.
T32 2323-2528 Sentence denotes One of the key issues facing National Health Service (NHS) authorities is planning for more localised capacity needs and estimating the timings of surges in demand at a regional or healthcare system level.
T33 2529-3160 Sentence denotes This is especially challenging given the rapidly evolving epidemiological and biological data; the changes in COVID-19 testing availability (eg, previously limited and changing eligibility requirements); the uncertainty in the effectiveness of interventions in different contexts; significant and uncertain time lags between initial infection and hospitalisation or death; and different regions being at different points in the epidemic curve.9 South West England (SW) is the region with the lowest number of total cases in England (as of 11 May 2020), lagging behind the national data driven by the earlier epidemic in London.9 14
T34 3161-3483 Sentence denotes COVID-19 results in a significant requirement for hospitalisation and high mortality among patients requiring admission to critical care (particularly among those requiring ventilation).15 16 In the SW, the population is on average older than in London17 and is older than the UK as a whole (online supplemental table S1).
T35 3484-3742 Sentence denotes Older age puts individuals at elevated risk of requiring hospital care.18–20 Consequently, we might expect higher mortality and greater demand for beds in the SW than estimations output from national models that may lack such granularity or risk sensitivity.
T36 3743-4098 Sentence denotes Supplementary data However, the SW’s first case occurred around 2 weeks later than the first UK case14; perhaps implying that the local SW epidemic may be more effectively controlled due to a lower number of baseline cases (than the national average) at the time national interventions were implemented, as well as reduced transmission due to rurality.
T37 4099-4319 Sentence denotes This subnational analysis can support in mapping the local epidemic, planning local hospital capacity outside of the main urban centres and ensuring effective mobilisation of additional support and resources if required.
T38 4320-4579 Sentence denotes Should demand be lower than expected, reliable forecasts could facilitate more effective use of available resources through reintroducing elective treatments (that had initially been postponed) and responding to other non-COVID-19 sources of emergency demand.
T39 4580-4896 Sentence denotes In this study, taking into account the timeline of UK-wide non-pharmaceutical interventions (social distancing, school closures/lockdown), we illustrate use of our model in projecting estimates for the expected distributions of cases, deaths, asymptomatic and symptomatic infections and demand for acute and IC beds.
T40 4897-4968 Sentence denotes We present the model trajectories for SW using publicly available data.