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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
139 295-301 Disease denotes deaths MESH:D003643
140 359-367 Disease denotes COVID-19 MESH:C000657245
141 416-424 Disease denotes COVID-19 MESH:C000657245
142 433-439 Disease denotes deaths MESH:D003643
143 589-598 Disease denotes mortality MESH:D003643
144 651-659 Disease denotes COVID-19 MESH:C000657245
145 668-674 Disease denotes deaths MESH:D003643
146 749-757 Disease denotes COVID-19 MESH:C000657245
147 758-764 Disease denotes deaths MESH:D003643
148 870-879 Disease denotes mortality MESH:D003643
149 923-929 Disease denotes deaths MESH:D003643
151 1110-1114 Disease denotes fits MESH:D012640
154 1265-1275 Disease denotes infections MESH:D007239
155 2711-2719 Disease denotes COVID-19 MESH:C000657245

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T92 0-36 Sentence denotes Parameter estimates and data sources
T93 37-78 Sentence denotes Model parameters are detailed in table 1.
T94 79-148 Sentence denotes We used available published literature to inform parameter estimates.
T95 149-584 Sentence denotes We used the following publicly available metrics for model fitting: regional cumulative cases in SW (tested and confirmed cases in hospital), and deaths (daily/cumulative counts) from the Public Health England COVID-19 dashboard,14 and ONS weekly provisional data on COVID-19-related deaths.25 The case data are finalised prior to the previous 5 days, so we include all data until 14 May 2020, based on data reported until 18 May 2020.
T96 585-799 Sentence denotes The mortality data from ONS do not explicitly state the number of COVID-19-related deaths occurring in hospital, but they do report this value nationally (83.9% of COVID-19 deaths in hospital, as of 17 April 2020).
T97 800-942 Sentence denotes We assume that this percentage applies to the SW data and rescale the mortality to 83.9% to represent an estimate of total deaths in hospital.
T98 943-1008 Sentence denotes Table 1 Parameter estimates used in the model and their sources.
T99 1009-1114 Sentence denotes The distributions of unknown parameters are shown in online supplemental figure S1A for the best 100 fits
T100 1115-1181 Sentence denotes Symbol Description Uniform prior (min and max) or point estimate
T101 1182-1247 Sentence denotes 1 / η Duration of the non-infectious exposure period 5.1 days41
T102 1248-1341 Sentence denotes δ Percentage of infections which become symptomatic 82.1%42; vary between 73.15% and 91.05%
T103 1342-1445 Sentence denotes 1 / μ Duration of symptoms while not hospitalised (independent of outcome) Vary between 2 and 14 days
T104 1446-1535 Sentence denotes 1 / ρ Duration of stay in acute bed (independent of outcome) Vary between 2 and 14 days
T105 1536-1738 Sentence denotes γ g Percentage of symptomatic cases which will require hospitalisation 0–4=0.00%, 5–17=0.0408%, 18–29=1.04%,30–39=2.04%–7.00%, 40–49=2.53%–8.68%,50–59=4.86%–16.7%, 60–69=7.01%–24.0%,70+=9.87%–37.6%16
T106 1739-1810 Sentence denotes 1 / ψ Duration of stay in IC bed (independent of outcome) 3–11 days43
T107 1811-1904 Sentence denotes ϵ Percentage of those requiring hospitalisation who will require IC Vary between 0% and 30%
T108 1905-2054 Sentence denotes ω g Percentage of those requiring IC who will die 0–4=0.00%, 5–17=0.00%, 18–29=18.1%,30–39=18.1%, 40–49=24.7%,50–59=39.3%, 60–69=53.9%,70+=65.3%43
T109 2055-2149 Sentence denotes κ Percentage of those requiring acute beds (but not IC) who will die Vary between 5% and 35%
T110 2150-2234 Sentence denotes school Percentage of 0–18 year-olds attending school after 23 March 2020 Assume 5%
T111 2235-2354 Sentence denotes distancing Percentage reduction in contact rates due to social distancing after 15 March 2020 Vary between 0% and 50%
T112 2355-2458 Sentence denotes lockdown Percentage reduction in contact rates due to lockdown after 23 March 2020 Retail/recreation:
T113 2459-2562 Sentence denotes Bristol 86%, Bath 90%, Plymouth 85%, Gloucs 84%, Somerset 82%, Devon 85%, Dorset 84%44Transit stations:
T114 2563-2673 Sentence denotes Bristol 78%, Bath 71%, Plymouth 65%, Gloucs 69%, Somerset 67%, Devon 66%, Dorset 63%44Vary between 63% and 90%
T115 2674-2732 Sentence denotes R 0 Initial reproductive number of COVID-19 1.63–3.9524
T116 2733-2854 Sentence denotes endphase Time taken to fully adjust (across the population, on average) to new interventions Vary between 1 and 31 days
T117 2855-2874 Sentence denotes IC, intensive care.