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PMC:7786642 / 9272-12721 JSONTXT

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LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T5 1881-1888 Phenotype denotes obesity http://purl.obolibrary.org/obo/HP_0001513
T6 3185-3192 Phenotype denotes Obesity http://purl.obolibrary.org/obo/HP_0001513

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
120 1993-1997 Gene denotes S1.1 Gene:6267
121 1307-1311 Gene denotes S1.1 Gene:6267
122 1085-1093 Disease denotes COVID-19 MESH:C000657245
123 1153-1161 Disease denotes COVID-19 MESH:C000657245
124 1270-1278 Disease denotes infected MESH:D007239
125 1881-1888 Disease denotes obesity MESH:D009765

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T78 0-16 Sentence denotes 2.4 Confounders
T79 17-165 Sentence denotes We considered confounders related with meteorology, socio-demographics, disease spread, healthcare provision and health related variables (Table 1).
T80 166-379 Sentence denotes As meteorological confounders, we considered temperature and relative humidity and calculated the mean for March-June 2018 as this is the latest year with data available at 1x1km grid retrieved from the MetOffice.
T81 380-497 Sentence denotes We weighted temperature and relative humidity using the population weights calculated for the air-pollution exposure.
T82 498-627 Sentence denotes As socio-demographical confounders we considered age, sex, ethnicity, deprivation, urbanicity, population density and occupation.
T83 628-828 Sentence denotes Information on age (2018), sex (2018), ethnicity (2011), urbanicity (2011) and population density (2018) was available at the LSOA level from ONS (the most recent years available at time of analysis).
T84 829-1037 Sentence denotes To adjust for deprivation, we used quintiles of the index of multiple deprivation at LSOA level in 2019 (Ministry of Housing, Communities and Local Government), excluding the dimension related to air quality.
T85 1038-1326 Sentence denotes We used estimates of occupational exposures to COVID-19, as calculated by ONS, to adjust for high risk exposure to COVID-19, defined as those with a score higher than 80/100 (corresponding to at least >1 per week exposed to someone infected, Supplemental Material Text S1.1 and Table S1).
T86 1327-1513 Sentence denotes To account for disease progression, we used the number of days since the 1st reported case and the number of positive cases in each LTLA (as of 30th of June 2020, as retrieved from PHE).
T87 1514-1675 Sentence denotes Adjustment for the latter factors is expected to attenuate geographical differences generated due to regional differences about the timing on the pandemic curve.
T88 1676-1819 Sentence denotes For healthcare provision, we used the number of intensive care unit beds per population, in February 2020 per NHS trust, as retrieved from NHS.
T89 1820-1999 Sentence denotes Last, as health-related variables, we considered smoking and obesity prevalence at the GP practice level during 2018–2019, as retrieved from PHE (Supplemental Material Text S1.1).
T90 2000-2042 Sentence denotes Table 1 Data sources used in the analysis.
T91 2043-2105 Sentence denotes Confounders Source Spatial Resolution Temporal Resolution Type
T92 2106-2189 Sentence denotes Temperature MetOfficehttps://www.metoffice.gov.uk/ 1 km2 March-June 2018 continuous
T93 2190-2279 Sentence denotes Relative humidity MetOfficehttps://www.metoffice.gov.uk/ 1 km2 March-June 2018 continuous
T94 2280-2434 Sentence denotes Index of Multiple Deprivation Ministry of Housing, Communities and Local Governmenthttps://www.gov.uk/ Lower layer super output area 2019 rank (quintiles)
T95 2435-2546 Sentence denotes Urbanicity Office for National Statisticshttps://www.ons.gov.uk/ Lower layer super output area 2011 urban/rural
T96 2547-2651 Sentence denotes Days since 1st reported case Public Health England Lower tier local authority Until 30th June continuous
T97 2652-2759 Sentence denotes Number of positive cases Public Health England Lower tier local authority Until 30th June discrete (counts)
T98 2760-2896 Sentence denotes Population density Office for National Statisticshttps://www.ons.gov.uk/ Lower layer super output area 2018 continuous (log transformed)
T99 2897-3054 Sentence denotes Number of intensive care unit beds National Health Servicehttps://www.england.nhs.uk/ National Health Service trust February 2020 continuous (per population)
T100 3055-3184 Sentence denotes Smoking Public Health Englandhttps://fingertips.phe.org.uk/ General practitioner catchment area 2018–2019 continuous (prevalence)
T101 3185-3314 Sentence denotes Obesity Public Health Englandhttps://fingertips.phe.org.uk/ General practitioner catchment area 2018–2019 continuous (prevalence)
T102 3315-3449 Sentence denotes High Risk Occupation Office for National Statisticshttps://www.ons.gov.uk/ Middle layer super output area 2011 continuous (prevalence)