PMC:7784829 / 8051-8576 JSONTXT

{"project":"LitCovid-sentences","denotations":[{"id":"T65","span":{"begin":0,"end":122},"obj":"Sentence"},{"id":"T66","span":{"begin":123,"end":226},"obj":"Sentence"},{"id":"T67","span":{"begin":227,"end":427},"obj":"Sentence"},{"id":"T68","span":{"begin":428,"end":525},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"The flexible docking was performed using the refined spike protein of SARS-CoV (6CRV) and RBD domain of SARS-CoV-2 (6M0J). The grid maps of the interaction energies of various atom types were pre-calculated using AutoGrid 4.2. In each docking for spike surface glycoprotein and spike RBD, a grid box was created using a grid map of 45 × 45 × 45 points, 60 × 60 × 60 points with grid spacing of 0.375 Å and 0.420 Å respectively. The grid maps were centred on the corresponding ligand binding site within the protein structure."}

{"project":"LitCovid-PubTator","denotations":[{"id":"194","span":{"begin":53,"end":58},"obj":"Gene"},{"id":"195","span":{"begin":247,"end":273},"obj":"Gene"},{"id":"196","span":{"begin":70,"end":78},"obj":"Species"},{"id":"197","span":{"begin":104,"end":114},"obj":"Species"}],"attributes":[{"id":"A194","pred":"tao:has_database_id","subj":"194","obj":"Gene:43740568"},{"id":"A196","pred":"tao:has_database_id","subj":"196","obj":"Tax:694009"},{"id":"A197","pred":"tao:has_database_id","subj":"197","obj":"Tax:2697049"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"The flexible docking was performed using the refined spike protein of SARS-CoV (6CRV) and RBD domain of SARS-CoV-2 (6M0J). The grid maps of the interaction energies of various atom types were pre-calculated using AutoGrid 4.2. In each docking for spike surface glycoprotein and spike RBD, a grid box was created using a grid map of 45 × 45 × 45 points, 60 × 60 × 60 points with grid spacing of 0.375 Å and 0.420 Å respectively. The grid maps were centred on the corresponding ligand binding site within the protein structure."}