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PMC:7780584 / 2077-5803 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
84 612-619 Species denotes patient Tax:9606
85 174-179 Disease denotes fever MESH:D005334
86 251-256 Disease denotes fever MESH:D005334
87 334-339 Disease denotes cough MESH:D003371
88 366-385 Disease denotes shortness of breath MESH:D004417
89 387-391 Disease denotes rash MESH:D005076
90 393-401 Disease denotes vomiting MESH:D014839
91 406-414 Disease denotes diarrhea MESH:D003967
100 1119-1126 Species denotes patient Tax:9606
101 1014-1022 Disease denotes erythema MESH:D004890
102 1043-1064 Disease denotes tonsillar hypertrophy MESH:D006984
103 1134-1148 Disease denotes conjunctivitis MESH:D003231
104 1150-1165 Disease denotes lymphadenopathy MESH:D008206
105 1167-1185 Disease denotes hepatosplenomegaly MESH:C535727
106 1191-1196 Disease denotes edema MESH:D004487
107 1200-1204 Disease denotes rash MESH:D005076
109 1265-1272 Species denotes patient Tax:9606
112 1299-1306 Species denotes Patient Tax:9606
113 1474-1480 Chemical denotes Oxygen MESH:D010100
120 1667-1685 Gene denotes C-reactive protein Gene:1401
121 1687-1690 Gene denotes CRP Gene:1401
122 1886-1893 Species denotes patient Tax:9606
123 1805-1812 Chemical denotes ketones MESH:D007659
124 1934-1945 Chemical denotes ceftriaxone MESH:D002443
125 1757-1775 Disease denotes metabolic acidosis MESH:D000138
127 2023-2030 Species denotes patient Tax:9606
130 2146-2149 Gene denotes MCH Gene:5367
131 2079-2082 Gene denotes Hgb Gene:114757
135 2392-2395 Gene denotes Hgb Gene:114757
136 2461-2464 Gene denotes MCH Gene:5367
137 2316-2323 Species denotes patient Tax:9606
152 2984-3031 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
153 3033-3043 Species denotes SARS-COV-2 Tax:2697049
154 3136-3143 Species denotes patient Tax:9606
155 3394-3401 Species denotes patient Tax:9606
156 3172-3184 Chemical denotes azithromycin MESH:D017963
157 3475-3487 Chemical denotes azithromycin MESH:D017963
158 3506-3529 Chemical denotes amoxicillin clavulanate MESH:D019980
159 2745-2750 Disease denotes fever MESH:D005334
160 2909-2918 Disease denotes pneumonia MESH:D011014
161 3220-3229 Disease denotes pneumonia MESH:D011014
162 3241-3249 Disease denotes COVID-19 MESH:C000657245
163 3290-3295 Disease denotes fever MESH:D005334
164 3349-3358 Disease denotes cheilitis MESH:D002613
165 3553-3562 Disease denotes pneumonia MESH:D011014
167 3699-3708 Disease denotes pneumonia MESH:D011014

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T20 150-168 Phenotype denotes decreased appetite http://purl.obolibrary.org/obo/HP_0004396
T21 174-179 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T22 251-256 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T23 334-339 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T24 341-351 Phenotype denotes runny nose http://purl.obolibrary.org/obo/HP_0031417
T25 366-385 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T26 387-391 Phenotype denotes rash http://purl.obolibrary.org/obo/HP_0000988
T27 393-401 Phenotype denotes vomiting http://purl.obolibrary.org/obo/HP_0002013
T28 406-414 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T29 1014-1022 Phenotype denotes erythema http://purl.obolibrary.org/obo/HP_0010783
T30 1043-1064 Phenotype denotes tonsillar hypertrophy http://purl.obolibrary.org/obo/HP_0030812
T31 1134-1148 Phenotype denotes conjunctivitis http://purl.obolibrary.org/obo/HP_0000509
T32 1150-1165 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T33 1167-1185 Phenotype denotes hepatosplenomegaly http://purl.obolibrary.org/obo/HP_0001433
T34 1191-1196 Phenotype denotes edema http://purl.obolibrary.org/obo/HP_0000969
T35 1200-1204 Phenotype denotes rash http://purl.obolibrary.org/obo/HP_0000988
T36 1757-1775 Phenotype denotes metabolic acidosis http://purl.obolibrary.org/obo/HP_0001942
T37 2745-2750 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T38 2909-2918 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T39 3220-3229 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T40 3290-3295 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T41 3349-3358 Phenotype denotes cheilitis http://purl.obolibrary.org/obo/HP_0100825
T42 3553-3562 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T43 3699-3708 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T17 0-17 Sentence denotes Case presentation
T18 18-194 Sentence denotes A 13-month-old male presented to our pediatric emergency department (ED) in early April 2020 with the chief complaint of fussiness, decreased appetite, and fever for five days.
T19 195-289 Sentence denotes His mother reported that there was no resolution of his fever despite the use of antipyretics.
T20 290-415 Sentence denotes At the presentation time, his mother denied cough, runny nose, ear pulling, shortness of breath, rash, vomiting, or diarrhea.
T21 416-472 Sentence denotes She reported no recent travel nor sick contacts at home.
T22 473-607 Sentence denotes Social history was remarkable for crowded and close living conditions, with five other family members sharing a two-bedroom apartment.
T23 608-738 Sentence denotes The patient remained isolated at home since the pandemic began, but other family members had been out of the house for groceries. 
T24 739-845 Sentence denotes He was nontoxic on physical exam, appearing but fussy and febrile with a temperature of 102.7°F (Table 1).
T25 846-957 Sentence denotes Physical exam was remarkable for dry, cracked lips with fissuring along the vermilion border and labial mucosa.
T26 958-1065 Sentence denotes His mucous membranes were dry, and there was pharyngeal erythema without exudates or tonsillar hypertrophy.
T27 1066-1114 Sentence denotes The chest was clear to auscultation bilaterally.
T28 1115-1236 Sentence denotes The patient had no conjunctivitis, lymphadenopathy, hepatosplenomegaly, nor edema or rash on the trunk, hands, and feet. 
T29 1237-1285 Sentence denotes Table 1 Vital signs of the patient on admission
T30 1286-1328 Sentence denotes Vital signs Patient Normal range for age
T31 1329-1363 Sentence denotes Temperature 102.7° F 95-100.3° F
T32 1364-1421 Sentence denotes Heart rate 172 beats per minute 80-130 beats per minute
T33 1422-1473 Sentence denotes Respiratory rate 32 breaths/min 40-60 breaths/min
T34 1474-1707 Sentence denotes Oxygen saturation on room air 98% 94-100% Laboratory findings showed a negative respiratory viral panel, a normal complete blood count (CBC) with lymphocytic predominance (Table 2), elevated C-reactive protein (CRP) of 25.81 mg/dL.
T35 1708-1839 Sentence denotes The comprehensive metabolic panel (CMP) revealed metabolic acidosis with a normal anion gap with ketones present in the urinalysis.
T36 1840-1985 Sentence denotes We obtained blood and urine cultures, and the patient was admitted and started empirically on ceftriaxone, antipyretics, and intravenous fluids. 
T37 1986-2030 Sentence denotes Table 2 Complete blood count of the patient
T38 2031-2264 Sentence denotes WBC - white blood cells; RBC - red blood cells; Hgb - hemoglobin; Hct - hematocrit; MCV - mean corpuscular volume; MCH - mean corpuscular hemoglobin; MCHC - mean corpuscular hemoglobin concentration; RDW - red cell distribution width
T39 2265-2334 Sentence denotes Complete blood count Result Reference range (for patient age) Unit
T40 2335-2362 Sentence denotes WBC 7.7 6.0-17.5 x 109/L
T41 2363-2391 Sentence denotes RBC 4.46 3.8-5.4 x 10¹²/L
T42 2392-2417 Sentence denotes Hgb 11.4 13.1-15.5 g/L
T43 2418-2437 Sentence denotes Hct 35 39-47 L/L
T44 2438-2460 Sentence denotes MCV 77 72.0-88.0 fL
T45 2461-2479 Sentence denotes MCH 26 26-34 ρg
T46 2480-2503 Sentence denotes MCHC 329 320-360 g/L
T47 2504-2527 Sentence denotes RDW 12.9 11.5-16.0 %
T48 2528-2559 Sentence denotes Platelet 357 130-400 x 109/L
T49 2560-2593 Sentence denotes Neutrophil 2.5 1.5-8.5 x 109/L
T50 2594-2627 Sentence denotes Lymphocytes 3.9 3-13.0 x 109/L
T51 2628-2660 Sentence denotes Monocytes 1.1 0.1-1.9 x 109/L
T52 2661-2693 Sentence denotes Basophils 0.2 0.0-0.3 x 109/L
T53 2694-2930 Sentence denotes Eosinophils 0 0.0-1.5 x 109/L Due to persistent fever, a chest X-ray (CXR) was ordered, which showed bilateral interstitial infiltrates more prominent on the right peri-hilar area, which could represent atypical pneumonia (Figure 1).
T54 2931-2970 Sentence denotes Urine and blood cultures were negative.
T55 2971-3131 Sentence denotes However, the severe acute respiratory syndrome coronavirus 2 (SARS-COV-2) polymerase chain reaction (PCR) was positive 24 hours after admission to the hospital.
T56 3132-3285 Sentence denotes The patient was subsequently started on azithromycin for clinical suspicion of atypical pneumonia related to COVID-19, correlating with the CXR findings.
T57 3286-3389 Sentence denotes The fever subsided after the first day of antibiotics, and the cheilitis improved during the admission.
T58 3390-3564 Sentence denotes The patient was discharged home with isolation guidelines and completed five days of azithromycin and seven days of amoxicillin clavulanate for suspected clinical pneumonia. 
T59 3565-3708 Sentence denotes Figure 1 Portable CXR: bilateral interstitial infiltrates more prominent on the right perihilar area, which could represent atypical pneumonia
T60 3709-3726 Sentence denotes CXR - chest X-ray