PMC:7755033 / 99796-100351 JSONTXT

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{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7755033","sourcedb":"PMC","sourceid":"7755033","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7755033","text":"Figure 11.1. MD simulation of SARS–CoV spike glycoprotein (PDB ID: 5WRG) with withanolide B using LARMD online server. (A) Ligand–protein conformation, (B) RMSD of receptor and ligand (C) RMSD histogram of receptor (D) RMSD histogram of ligand (E) Radius of gyration—Rg value (F) Fraction of native contacts analysis of SARS-CoV–2 PL-pro (PDB ID: 6W9C) with withanolide B over a time frame of 4000 ps (4 ns) (G) RMSF value of each residue (H) B–factor value (changing from blue to red with increase in value) and (I) B–factor analysis of defined complex.","divisions":[{"label":"label","span":{"begin":0,"end":12}}],"tracks":[{"project":"LitCovid-PubTator","denotations":[{"id":"1908","span":{"begin":332,"end":338},"obj":"Gene"},{"id":"1909","span":{"begin":40,"end":45},"obj":"Gene"},{"id":"1910","span":{"begin":340,"end":343},"obj":"Gene"},{"id":"1911","span":{"begin":60,"end":63},"obj":"Gene"},{"id":"1912","span":{"begin":31,"end":39},"obj":"Species"},{"id":"1913","span":{"begin":321,"end":331},"obj":"Species"}],"attributes":[{"id":"A1908","pred":"tao:has_database_id","subj":"1908","obj":"Gene:43740578"},{"id":"A1909","pred":"tao:has_database_id","subj":"1909","obj":"Gene:43740568"},{"id":"A1910","pred":"tao:has_database_id","subj":"1910","obj":"Gene:5131"},{"id":"A1911","pred":"tao:has_database_id","subj":"1911","obj":"Gene:5131"},{"id":"A1912","pred":"tao:has_database_id","subj":"1912","obj":"Tax:694009"},{"id":"A1913","pred":"tao:has_database_id","subj":"1913","obj":"Tax:2697049"},{"subj":"1908","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1909","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1910","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1911","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1912","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1913","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T1045","span":{"begin":0,"end":12},"obj":"Sentence"},{"id":"T1046","span":{"begin":14,"end":67},"obj":"Sentence"},{"id":"T1047","span":{"begin":68,"end":347},"obj":"Sentence"},{"id":"T1048","span":{"begin":348,"end":555},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T1045","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1046","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1047","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1048","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PubTator","color":"#93b2ec","default":true},{"id":"LitCovid-sentences","color":"#ccec93"}]}]}}