PMC:7755033 / 102217-102992 JSONTXT

{"project":"LitCovid-PubTator","denotations":[{"id":"1967","span":{"begin":182,"end":185},"obj":"Gene"},{"id":"1968","span":{"begin":187,"end":190},"obj":"Gene"},{"id":"1969","span":{"begin":195,"end":198},"obj":"Gene"},{"id":"1970","span":{"begin":274,"end":277},"obj":"Gene"},{"id":"1971","span":{"begin":282,"end":285},"obj":"Gene"},{"id":"1972","span":{"begin":602,"end":605},"obj":"Gene"},{"id":"1973","span":{"begin":607,"end":610},"obj":"Gene"},{"id":"1974","span":{"begin":615,"end":618},"obj":"Gene"},{"id":"1975","span":{"begin":269,"end":272},"obj":"Gene"},{"id":"1976","span":{"begin":33,"end":36},"obj":"Gene"},{"id":"1977","span":{"begin":7,"end":17},"obj":"Species"}],"attributes":[{"id":"A1967","pred":"tao:has_database_id","subj":"1967","obj":"Gene:7163"},{"id":"A1968","pred":"tao:has_database_id","subj":"1968","obj":"Gene:3854"},{"id":"A1969","pred":"tao:has_database_id","subj":"1969","obj":"Gene:3853"},{"id":"A1970","pred":"tao:has_database_id","subj":"1970","obj":"Gene:3854"},{"id":"A1971","pred":"tao:has_database_id","subj":"1971","obj":"Gene:3853"},{"id":"A1972","pred":"tao:has_database_id","subj":"1972","obj":"Gene:7163"},{"id":"A1973","pred":"tao:has_database_id","subj":"1973","obj":"Gene:3854"},{"id":"A1974","pred":"tao:has_database_id","subj":"1974","obj":"Gene:3853"},{"id":"A1975","pred":"tao:has_database_id","subj":"1975","obj":"Gene:7163"},{"id":"A1976","pred":"tao:has_database_id","subj":"1976","obj":"Gene:5131"},{"id":"A1977","pred":"tao:has_database_id","subj":"1977","obj":"Tax:2697049"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"PCA of SARS-CoV-2 main protease (PDB ID: 6LU7) with withanolide A (A) PCA results for trajectory (B) Simple clustering in PC subspace(C) Table data showing residue-wise loadings for PC1, PC2 and PC3 and residue number at each position (D) Clustering dendogram based on PC1, PC2 and PC3 (E) Dynamical residue cross-correlation map; the correlated residues are in blue, anti-correlated residues are in red; the pairwise residues with higher correlated coefficient (\u003e0.8) and with higher anti-correlated coefficient (≤0.4) are linked with light pink and light blue (Int_mod) (F) Residue-wise loadings for PC1, PC2 and PC3 (G) Table showing pairwise cross-correlation coefficients; higher correlated coefficient value is \u003e0.8 and higher anti-correlated coefficient value is ≤0.4."}

{"project":"LitCovid-sentences","denotations":[{"id":"T1060","span":{"begin":0,"end":40},"obj":"Sentence"},{"id":"T1061","span":{"begin":41,"end":775},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"PCA of SARS-CoV-2 main protease (PDB ID: 6LU7) with withanolide A (A) PCA results for trajectory (B) Simple clustering in PC subspace(C) Table data showing residue-wise loadings for PC1, PC2 and PC3 and residue number at each position (D) Clustering dendogram based on PC1, PC2 and PC3 (E) Dynamical residue cross-correlation map; the correlated residues are in blue, anti-correlated residues are in red; the pairwise residues with higher correlated coefficient (\u003e0.8) and with higher anti-correlated coefficient (≤0.4) are linked with light pink and light blue (Int_mod) (F) Residue-wise loadings for PC1, PC2 and PC3 (G) Table showing pairwise cross-correlation coefficients; higher correlated coefficient value is \u003e0.8 and higher anti-correlated coefficient value is ≤0.4."}